Protein Information |
Information Type | Description |
---|---|
Protein name | Uncharacterized protein RP725 |
NCBI Accession ID | AJ235273.1 |
Organism | Rickettsia prowazekii (strain Madrid E) |
Left | 39039 |
Right | 39341 |
Strand | - |
Nucleotide Sequence | ATGTCTTGGATAGATAAGTTTTTTATTACTTTTTTTTATACAAAAGTAGGTGAAGATGAATTTTTGAATCAATATTATGAAAGTCGTAATAATATTGATTATTTAGGACGTTCACGGAGGTGTGTTATTTATAAAAATATAAATGAGTCGACAAAAATTCCGCCAAGTTGGTATTCTTGGTTACATCATTTAGTAAATGAGATACCAAAAAATGTTCAACTTTTTCCATGGCAACAAAATAATAAAATAACTAAGAAGCTGCCTAAAACATCAAATCTTAAATATAATAGATGGCAACCATAA |
Sequence | MSWIDKFFITFFYTKVGEDEFLNQYYESRNNIDYLGRSRRCVIYKNINESTKIPPSWYSWLHHLVNEIPKNVQLFPWQQNNKITKKLPKTSNLKYNRWQP |
Source of smORF | Swiss-Prot |
Function | The ORF matches to the profile of cl01534. Profile Description: NADH ubiquinone oxidoreductase subunit NDUFA12. NADH:ubiquinone oxidoreductase 18 kDa subunit; Provisional |
Pubmed ID | 9823893 |
Domain | CDD:412949 |
Functional Category | Others |
Uniprot ID | Q9ZCK4 |
ORF Length (Amino Acid) | 100 |
Conservation Analysis |
Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
---|---|---|---|---|---|
1 | 911304 | 911606 | - | NC_017049.1 | Rickettsia prowazekii str. Chernikova |
2 | 909752 | 910054 | - | NC_017066.1 | Rickettsia typhi str. TH1527 |
3 | 1045572 | 1045871 | - | NZ_AP019864.1 | Rickettsia heilongjiangensis |
4 | 1036418 | 1036717 | - | NC_010263.3 | Rickettsia rickettsii str. Iowa |
5 | 1038829 | 1039128 | - | NC_016639.1 | Rickettsia slovaca 13-B |
6 | 363098 | 363397 | - | NC_017058.1 | Rickettsia australis str. Cutlack |
7 | 1047088 | 1047387 | + | NC_009881.1 | Rickettsia akari str. Hartford |
8 | 1029396 | 1029695 | - | NC_003103.1 | Rickettsia conorii str. Malish 7 |
9 | 537612 | 537911 | - | NZ_LN794217.1 | Rickettsia monacensis |
10 | 412676 | 412975 | + | NC_007940.1 | Rickettsia bellii RML369-C |
Neighborhood Conservation Analysis |
Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
---|---|---|---|---|---|---|
1 | PF02470.22 | 1.0 | 10 | 25.0 | same-strand | MlaD protein |
2 | PF00075.26 | 1.0 | 10 | -12.0 | same-strand | RNase H |
3 | PF06230.13 | 1.0 | 10 | 1709.5 | opposite-strand | LpxI C-terminal domain |
4 | PF17930.3 | 1.0 | 10 | 1709.5 | opposite-strand | LpxI N-terminal domain |
5 | PF01121.22 | 0.9 | 9 | 2514 | opposite-strand | Dephospho-CoA kinase |
6 | PF13238.8 | 0.6 | 6 | 2518.0 | opposite-strand | AAA domain |
7 | PF00929.26 | 0.9 | 9 | 3080 | opposite-strand | Exonuclease |