Result : Q9X698
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Protein VdcD (Phenolic acid decarboxylase subunit D) (PAD) |
| NCBI Accession ID | AF134589.1 |
| Organism | Streptomyces sp. (strain D7) |
| Left | 2151 |
| Right | 2390 |
| Strand | + |
| Nucleotide Sequence | GTGAACCACCTGCCCGTTGAATGCCCCCGCTGCGCCTTTGAGGACATCTCCCTGCTTGCCACGTCCCCCGTCCCAGGCGTGTGGGACGTGGTCCAGTGCGGCCGCTGTCTCTACACCTGGCGCACGATCGAACCCGCACGCCGCACCCGGCGTGACGCCTACCCGGACAGCTTCAAGCTGACGGCGGAGGACATCGAGAACGCCATCGAGGTGCCCGCGGTGCCGCCACTGCTCAAGTGA |
| Sequence | MNHLPVECPRCAFEDISLLATSPVPGVWDVVQCGRCLYTWRTIEPARRTRRDAYPDSFKLTAEDIENAIEVPAVPPLLK |
| Source of smORF | Swiss-Prot |
| Function | Involved in the non-oxidative decarboxylation and detoxification of phenolic derivatives under both aerobic and anaerobic conditions, however the precise biochemical function of VdcD in metabolism of phenolic acid is unknown. {ECO:0000269|Pubmed:10517592, ECO:0000269|Pubmed:15979273}. |
| Pubmed ID | 10517592 15979273 |
| Domain | |
| Functional Category | Others |
| Uniprot ID | Q9X698 |
| ORF Length (Amino Acid) | 79 |
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| Conservation Analysis |
No. of Species: 64
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 243296 | 243529 | - | NZ_CP051006.1 | Streptomyces griseofuscus |
| 2 | 7987844 | 7988077 | + | NZ_CP019457.1 | Streptomyces lydicus |
| 3 | 6194759 | 6194998 | - | NZ_CP020809.1 | Mycobacterium dioxanotrophicus |
| 4 | 777627 | 777872 | + | NZ_CP023694.1 | Streptomyces coeruleorubidus |
| 5 | 4084304 | 4084552 | - | NZ_CP011530.1 | Mycobacteroides immunogenum |
| 6 | 7173466 | 7173705 | + | NZ_CP016279.1 | Streptomyces griseochromogenes |
| 7 | 3717958 | 3718206 | - | NZ_AP018165.1 | [Mycobacterium] stephanolepidis |
| 8 | 2781572 | 2781808 | + | NZ_CP042429.1 | Corynebacterium nuruki S6-4 |
| 9 | 4643650 | 4643889 | - | NZ_CP021978.1 | Streptomyces hawaiiensis |
| 10 | 4544835 | 4545062 | + | NZ_CP049115.1 | Pantoea stewartii |
| 11 | 2722897 | 2723124 | - | NC_017554.1 | Pantoea ananatis PA13 |
| 12 | 2235418 | 2235615 | + | NZ_CP026377.1 | Mixta gaviniae |
| 13 | 3693570 | 3693767 | - | NZ_CP019706.1 | Pantoea alhagi |
| 14 | 583113 | 583340 | + | NZ_CP038662.1 | Serratia nematodiphila |
| 15 | 2332386 | 2332607 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 16 | 3921241 | 3921438 | + | NZ_LS483470.1 | Leminorella richardii |
| 17 | 3537271 | 3537468 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 18 | 38340 | 38537 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 19 | 3328749 | 3328946 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 20 | 4672761 | 4672958 | + | NZ_CP017279.1 | Enterobacter ludwigii |
| 21 | 1172265 | 1172504 | - | NZ_AP014635.1 | Vibrio tritonius |
| 22 | 597439 | 597636 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 23 | 3416471 | 3416668 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 24 | 259591 | 259788 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 25 | 2275571 | 2275771 | + | NC_009142.1 | Saccharopolyspora erythraea NRRL 2338 |
| 26 | 3720099 | 3720320 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 27 | 4201988 | 4202185 | - | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 28 | 1047488 | 1047685 | + | NZ_CP054254.1 | Klebsiella variicola |
| 29 | 757792 | 757989 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 30 | 5020841 | 5021068 | + | NZ_CP016948.1 | Serratia surfactantfaciens |
| 31 | 3240274 | 3240471 | + | NC_013716.1 | Citrobacter rodentium ICC168 |
| 32 | 1581925 | 1582122 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 33 | 8853376 | 8853627 | - | NZ_CP047020.1 | Streptomyces broussonetiae |
| 34 | 3667207 | 3667428 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 35 | 3719331 | 3719552 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 36 | 3556768 | 3556989 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 37 | 4026514 | 4026735 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 38 | 1001161 | 1001358 | + | NZ_CP014007.2 | Kosakonia oryzae |
| 39 | 4186550 | 4186747 | - | NZ_CP015113.1 | Kosakonia radicincitans |
| 40 | 1029714 | 1029911 | + | NZ_LR134475.1 | Klebsiella aerogenes |
| 41 | 3805128 | 3805349 | - | NZ_CP009756.1 | Enterobacter cloacae |
| 42 | 3809581 | 3809778 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 43 | 3065259 | 3065456 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 44 | 1663580 | 1663777 | - | NZ_CP033744.1 | Citrobacter freundii |
| 45 | 1045844 | 1046041 | + | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 46 | 108159 | 108356 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
| 47 | 880766 | 880963 | + | NZ_CP053416.1 | Salmonella bongori |
| 48 | 3711831 | 3712052 | - | NC_015968.1 | Enterobacter soli |
| 49 | 4680613 | 4680834 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 50 | 1181961 | 1182185 | + | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 51 | 3431248 | 3431445 | + | NZ_CP044098.1 | Citrobacter portucalensis |
| 52 | 5169699 | 5169896 | - | NZ_CP020388.1 | Pluralibacter gergoviae |
| 53 | 1144941 | 1145141 | + | NZ_CP060111.1 | Klebsiella michiganensis |
| 54 | 3584268 | 3584465 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 55 | 1011895 | 1012092 | + | NZ_CP045845.1 | Kluyvera intermedia |
| 56 | 3874607 | 3874804 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 57 | 1616393 | 1616590 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 58 | 455529 | 455756 | + | NZ_CP015749.1 | Pectobacterium parmentieri |
| 59 | 2803015 | 2803212 | - | NZ_AP014857.1 | Escherichia albertii |
| 60 | 4410055 | 4410252 | + | NZ_CP038469.1 | Citrobacter tructae |
| 61 | 1250980 | 1251180 | + | NZ_CP036175.1 | Klebsiella huaxiensis |
| 62 | 890405 | 890602 | + | NZ_CP061527.1 | Shigella dysenteriae |
| 63 | 989564 | 989764 | + | NZ_CP041247.1 | Raoultella electrica |
| 64 | 4482557 | 4482784 | - | NZ_CP071320.1 | Serratia ureilytica |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP012266.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01977.18 | 0.97 | 62 | 49.0 | same-strand | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase |
| 2 | PF01047.24 | 0.8 | 51 | 2240 | opposite-strand | MarR family |
| 3 | PF12802.9 | 0.8 | 51 | 2240 | opposite-strand | MarR family |
| 4 | PF13463.8 | 0.8 | 51 | 2240 | opposite-strand | Winged helix DNA-binding domain |
| 5 | PF00488.23 | 0.61 | 39 | 165 | opposite-strand | MutS domain V |
| 6 | PF01624.22 | 0.61 | 39 | 165 | opposite-strand | MutS domain I |
| 7 | PF05192.20 | 0.61 | 39 | 165 | opposite-strand | MutS domain III |
| 8 | PF05188.19 | 0.61 | 39 | 165 | opposite-strand | MutS domain II |
| 9 | PF05190.20 | 0.61 | 39 | 165 | opposite-strand | MutS family domain IV |
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