* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_013642.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF07690.18
|
1.0
|
4
|
4110.0
|
same-strand
|
Major Facilitator Superfamily
|
2
|
PF12832.9
|
1.0
|
4
|
4110.0
|
same-strand
|
MFS 1 like family
|
3
|
PF19864.1
|
1.0
|
4
|
389.0
|
same-strand
|
Radical SAM proteins, N-terminal
|
4
|
PF04055.23
|
1.0
|
4
|
389
|
same-strand
|
Radical SAM superfamily
|
5
|
PF01381.24
|
0.75
|
3
|
2273
|
same-strand
|
Helix-turn-helix
|
6
|
PF13744.8
|
0.75
|
3
|
2273
|
same-strand
|
Helix-turn-helix domain
|
7
|
PF13560.8
|
0.75
|
3
|
2273
|
same-strand
|
Helix-turn-helix domain
|
8
|
PF00005.29
|
0.75
|
3
|
3134
|
same-strand
|
ABC transporter
|
9
|
PF00664.25
|
0.75
|
3
|
3134
|
same-strand
|
ABC transporter transmembrane region
|
++ More..