Result : Q9S0K8
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Phosphocarrier protein NPr (Nitrogen-related HPr) |
| NCBI Accession ID | AB033988.1 |
| Organism | Shewanella violacea (strain JCM 10179 / CIP 106290 / LMG 19151 / DSS12) |
| Left | 4021 |
| Right | 4296 |
| Strand | + |
| Nucleotide Sequence | ATGACTAAATTAGAACGTCAGGTCACCATATGCAATAAACTCGGCCTCCATGCCCGAGCTGCGACTAAACTCGCCATCTTGGCTTCGGAATTTGACGCCGAGATAACCATAGTGCAGGGAGAGAAAAAAGCCTCAGCTGCCAGCGTATTAGGCCTGTTGATGCTAGAGACTGGCATGGGGAAAACCATCACTCTACTCGGTAAGGGTCAGGATGCCGATGCCGCACTCGATGCAATATGTGCCCTGGTCGATGCCAAATTCGATGAAGCGAGTTAA |
| Sequence | MTKLERQVTICNKLGLHARAATKLAILASEFDAEITIVQGEKKASAASVLGLLMLETGMGKTITLLGKGQDADAALDAICALVDAKFDEAS |
| Source of smORF | Swiss-Prot |
| Function | Component of the phosphoenolpyruvate-dependent nitrogen-metabolic phosphotransferase system (nitrogen-metabolic PTS), that seems to be involved in regulating nitrogen metabolism. The phosphoryl group from phosphoenolpyruvate (PEP) is transferred to the phosphoryl carrier protein NPr by enzyme I-Ntr. Phospho-NPr then transfers it to EIIA-Ntr. Could function in the transcriptional regulation of sigma-54 dependent operons in conjunction with the NPr (PtsO) and EIIA-Ntr (PtsN) proteins. {ECO:0000250}. |
| Pubmed ID | 10760597 20458400 |
| Domain | CDD:412221 |
| Functional Category | Others |
| Uniprot ID | Q9S0K8 |
| ORF Length (Amino Acid) | 91 |
++ More..
| Conservation Analysis |
No. of Species: 102
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 479551 | 479826 | - | NC_014012.1 | Shewanella violacea DSS12 |
| 2 | 5856702 | 5856977 | + | NZ_CP014782.1 | Shewanella psychrophila |
| 3 | 5144538 | 5144813 | + | NC_010506.1 | Shewanella woodyi ATCC 51908 |
| 4 | 868538 | 868813 | - | NC_009831.1 | Shewanella sediminis HAW-EB3 |
| 5 | 3976566 | 3976841 | + | NZ_CP022358.1 | Shewanella bicestrii |
| 6 | 861853 | 862128 | - | NC_016901.1 | Shewanella baltica OS678 |
| 7 | 3954682 | 3954957 | + | NC_009092.1 | Shewanella loihica PV-4 |
| 8 | 3707377 | 3707652 | + | NZ_CP022272.1 | Shewanella marisflavi |
| 9 | 679227 | 679502 | - | NC_011566.1 | Shewanella piezotolerans WP3 |
| 10 | 843168 | 843443 | - | NZ_CP046378.1 | Shewanella algae |
| 11 | 4507237 | 4507512 | + | NC_010334.1 | Shewanella halifaxensis HAW-EB4 |
| 12 | 4410427 | 4410702 | + | NC_009901.1 | Shewanella pealeana ATCC 700345 |
| 13 | 558779 | 559054 | - | NC_007954.1 | Shewanella denitrificans OS217 |
| 14 | 5049583 | 5049858 | + | NZ_CP037952.1 | Parashewanella spongiae |
| 15 | 3593707 | 3593982 | + | NZ_CP069213.1 | Shewanella litorisediminis |
| 16 | 3666587 | 3666862 | + | NC_008700.1 | Shewanella amazonensis SB2B |
| 17 | 4026162 | 4026437 | + | NC_008345.1 | Shewanella frigidimarina NCIMB 400 |
| 18 | 340919 | 341194 | + | NZ_CP037951.1 | Parashewanella tropica |
| 19 | 4409938 | 4410213 | + | NZ_CP034015.1 | Shewanella livingstonensis |
| 20 | 3405639 | 3405914 | + | NZ_CP020373.1 | Shewanella khirikhana |
| 21 | 4017715 | 4017990 | + | NZ_CP041036.1 | Shewanella polaris |
| 22 | 4301806 | 4302078 | + | NZ_CP020472.1 | Shewanella japonica |
| 23 | 1599317 | 1599586 | + | NZ_CP036200.1 | Shewanella maritima |
| 24 | 3889903 | 3890172 | + | NC_014541.1 | Ferrimonas balearica DSM 9799 |
| 25 | 1177733 | 1177978 | + | NZ_CP052766.1 | Alteromonas pelagimontana |
| 26 | 3415478 | 3415744 | + | NZ_CP036536.1 | Salinimonas lutimaris |
| 27 | 714663 | 714935 | - | NZ_CP031769.1 | Salinimonas sediminis |
| 28 | 2661899 | 2662171 | + | NZ_CP029347.1 | Saliniradius amylolyticus |
| 29 | 914474 | 914710 | - | NZ_CP014322.1 | Alteromonas addita |
| 30 | 3300218 | 3300454 | + | NC_015554.1 | Alteromonas naphthalenivorans |
| 31 | 798296 | 798565 | - | NZ_CP072844.1 | Psychrosphaera aestuarii |
| 32 | 3224437 | 3224712 | + | NC_012691.1 | Tolumonas auensis DSM 9187 |
| 33 | 363718 | 363957 | - | NZ_CP039700.1 | Vibrio cyclitrophicus |
| 34 | 412987 | 413262 | - | NC_006512.1 | Idiomarina loihiensis L2TR |
| 35 | 858264 | 858509 | - | NZ_CP008849.1 | Alteromonas australica |
| 36 | 2216469 | 2216747 | - | NZ_CP046793.1 | Vibrio metschnikovii |
| 37 | 465586 | 465816 | + | NZ_CP009888.1 | Pseudoalteromonas piratica |
| 38 | 2994792 | 2995058 | - | NZ_CP034759.1 | Litorilituus sediminis |
| 39 | 2924201 | 2924440 | + | NC_011753.2 | Vibrio atlanticus |
| 40 | 2791446 | 2791724 | + | NZ_CP045350.1 | Vibrio aquimaris |
| 41 | 455586 | 455819 | - | NZ_CP044069.1 | Vibrio vulnificus |
| 42 | 315481 | 315759 | - | NZ_CP009354.1 | Vibrio tubiashii ATCC 19109 |
| 43 | 74440 | 74718 | + | NZ_CP040990.1 | Vibrio furnissii |
| 44 | 4798082 | 4798318 | + | NC_003910.7 | Colwellia psychrerythraea 34H |
| 45 | 2800342 | 2800575 | + | NZ_CP030788.1 | Vibrio campbellii |
| 46 | 1837363 | 1837602 | - | NZ_CP065150.1 | Vibrio kanaloae |
| 47 | 874917 | 875192 | - | NC_013456.1 | Vibrio antiquarius |
| 48 | 338270 | 338545 | - | NZ_CP071325.1 | Photobacterium ganghwense |
| 49 | 449272 | 449526 | - | NZ_CP031781.1 | Vibrio parahaemolyticus |
| 50 | 2004026 | 2004301 | + | NZ_AP018689.1 | Vibrio aphrogenes |
| 51 | 245113 | 245388 | - | NZ_CP018312.1 | Vibrio rotiferianus |
| 52 | 2279921 | 2280154 | - | NZ_CP019959.1 | Vibrio owensii |
| 53 | 3360496 | 3360729 | + | NZ_CP009467.1 | Vibrio harveyi |
| 54 | 674560 | 674832 | - | NZ_CP070624.1 | Photobacterium damselae subsp. damselae |
| 55 | 624382 | 624636 | - | NZ_AP018685.1 | Vibrio rumoiensis |
| 56 | 694721 | 694996 | - | NZ_CP005974.1 | Photobacterium gaetbulicola Gung47 |
| 57 | 2648697 | 2648936 | + | NZ_AP019651.1 | Vibrio taketomensis |
| 58 | 450742 | 451020 | - | NZ_CP046268.1 | Vibrio spartinae |
| 59 | 1583007 | 1583279 | + | NZ_CP072133.1 | Pseudoalteromonas xiamenensis |
| 60 | 3068680 | 3068958 | + | NZ_AP014635.1 | Vibrio tritonius |
| 61 | 1161127 | 1161396 | - | NC_016043.1 | Taylorella asinigenitalis MCE3 |
| 62 | 2510640 | 2510918 | + | NZ_CP033078.1 | Vibrio zhugei |
| 63 | 3972164 | 3972433 | + | NZ_CP013119.1 | Alcaligenes faecalis |
| 64 | 414989 | 415228 | - | NZ_CP032093.1 | Vibrio alfacsensis |
| 65 | 3142602 | 3142880 | - | NZ_CP014035.2 | Vibrio fluvialis |
| 66 | 3808909 | 3809178 | - | NZ_CP016172.1 | Bordetella flabilis |
| 67 | 966521 | 966793 | - | NC_016041.1 | Glaciecola nitratireducens FR1064 |
| 68 | 6056749 | 6056979 | - | NZ_CP043046.1 | Pigmentiphaga aceris |
| 69 | 9835 | 10113 | - | NZ_AP019657.1 | Vibrio ponticus |
| 70 | 2701694 | 2701948 | - | NZ_CP025792.1 | Vibrio jasicida 090810c |
| 71 | 1575548 | 1575826 | + | NZ_CP020465.1 | Cognaticolwellia beringensis |
| 72 | 417230 | 417502 | - | NZ_CP011041.1 | Pseudoalteromonas tetraodonis |
| 73 | 460458 | 460730 | - | NZ_CP011030.1 | Pseudoalteromonas issachenkonii |
| 74 | 3034710 | 3034961 | + | NZ_CP051180.1 | Ferrimonas lipolytica |
| 75 | 2418566 | 2418844 | + | NZ_CP022741.1 | Vibrio qinghaiensis |
| 76 | 2869144 | 2869416 | + | NZ_CP011039.1 | Pseudoalteromonas spongiae UST010723-006 |
| 77 | 709448 | 709720 | - | NZ_CP046670.1 | Alteromonas mediterranea |
| 78 | 108911 | 109186 | - | NZ_CP009977.1 | Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 |
| 79 | 388038 | 388313 | - | NZ_CP047475.1 | Vibrio astriarenae |
| 80 | 1259814 | 1260083 | - | NC_018518.1 | Bordetella pertussis 18323 |
| 81 | 1958749 | 1959018 | + | NZ_LR134326.1 | Bordetella bronchiseptica |
| 82 | 929471 | 929755 | - | NZ_CP043043.1 | Gluconobacter thailandicus |
| 83 | 328648 | 328923 | - | NZ_CP013187.1 | Pseudoalteromonas phenolica |
| 84 | 1414099 | 1414368 | + | NZ_AP019378.1 | Bordetella parapertussis |
| 85 | 4243253 | 4243522 | - | NZ_CP038034.1 | Achromobacter insolitus |
| 86 | 518629 | 518901 | - | NZ_CP032090.1 | Pseudoalteromonas donghaensis |
| 87 | 1284628 | 1284900 | + | NZ_CP019628.1 | Pseudoalteromonas aliena |
| 88 | 2652691 | 2652969 | + | NZ_CP016414.1 | Vibrio scophthalmi |
| 89 | 538577 | 538846 | + | NZ_CP053986.1 | Achromobacter denitrificans |
| 90 | 1789382 | 1789633 | - | NZ_CP072425.1 | Pseudoalteromonas viridis |
| 91 | 2799622 | 2799891 | - | NZ_CP016440.1 | Bordetella pseudohinzii |
| 92 | 2115180 | 2115410 | - | NZ_CP043146.1 | Bordetella holmesii |
| 93 | 2931303 | 2931575 | + | NZ_CP031961.1 | Pseudoalteromonas tunicata |
| 94 | 2204453 | 2204728 | - | NZ_CP021377.1 | Oceanisphaera profunda |
| 95 | 2973847 | 2974116 | - | NC_010170.1 | Bordetella petrii |
| 96 | 535843 | 536079 | - | NZ_AP014690.1 | Asaia bogorensis NBRC 16594 |
| 97 | 974149 | 974439 | - | NZ_CP068419.1 | Gluconobacter sphaericus |
| 98 | 678209 | 678439 | - | NZ_CP011025.1 | Pseudoalteromonas arctica A 37-1-2 |
| 99 | 596823 | 597095 | - | NZ_CP027523.1 | Pseudoalteromonas carrageenovora |
| 100 | 2630676 | 2630951 | - | NZ_CP021376.1 | Oceanisphaera avium |
| 101 | 3520176 | 3520454 | + | NZ_CP031416.1 | Gallaecimonas mangrovi |
| 102 | 2770514 | 2770783 | - | NZ_LT907988.1 | Orrella dioscoreae |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_014012.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF03448.19 | 0.76 | 78 | 149.5 | same-strand | MgtE intracellular N domain |
| 2 | PF01769.18 | 0.77 | 79 | 150 | same-strand | Divalent cation transporter |
| 3 | PF00571.30 | 0.69 | 70 | 149.5 | same-strand | CBS domain |
| 4 | PF03668.17 | 0.86 | 88 | 7.0 | same-strand | P-loop ATPase protein family |
| 5 | PF00359.24 | 0.8 | 82 | 881.0 | same-strand | Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 |
| 6 | PF02482.21 | 0.83 | 85 | 1332 | same-strand | Sigma 54 modulation protein / S30EA ribosomal protein |
| 7 | PF04552.15 | 0.84 | 86 | 1648.5 | same-strand | Sigma-54, DNA binding domain |
| 8 | PF04963.15 | 0.83 | 85 | 1649 | same-strand | Sigma-54 factor, core binding domain |
| 9 | PF00309.22 | 0.83 | 85 | 1652 | same-strand | Sigma-54 factor, Activator interacting domain (AID) |
| 10 | PF00005.29 | 0.83 | 85 | 3222.5 | same-strand | ABC transporter |
| 11 | PF12399.10 | 0.82 | 84 | 3206.5 | same-strand | Branched-chain amino acid ATP-binding cassette transporter |
++ More..