* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP030926.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF01019.23
|
1.0
|
3
|
71
|
same-strand
|
Gamma-glutamyltranspeptidase
|
2
|
PF09587.12
|
1.0
|
3
|
1727
|
same-strand
|
Bacterial capsule synthesis protein PGA cap
|
3
|
PF14102.8
|
1.0
|
3
|
3021
|
same-strand
|
Capsule biosynthesis CapC
|
4
|
PF08245.14
|
1.0
|
3
|
3486
|
same-strand
|
Mur ligase middle domain
|
5
|
PF05908.13
|
0.67
|
2
|
83.0
|
same-strand
|
Poly-gamma-glutamate hydrolase
|
6
|
PF00877.21
|
0.67
|
2
|
759.5
|
opposite-strand
|
NlpC/P60 family
|
7
|
PF01476.22
|
0.67
|
2
|
759.5
|
opposite-strand
|
LysM domain
|
++ More..