Result : Q9PM34
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Nucleoid-associated protein Cj1642 |
| NCBI Accession ID | |
| Organism | Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168) |
| Left | |
| Right | |
| Strand | |
| Nucleotide Sequence | |
| Sequence | MDFSKMGELLNQVQEKAKNIELELANREFSAKSGAGLVKVSANGKGEIIDVSIDDSLLEDKESLQILLISAINDVLAMVAQNRSSMANDVLGGFGGMKL |
| Source of smORF | Swiss-Prot |
| Function | Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. {ECO:0000255|HAMAP-Rule:MF_00274}. |
| Pubmed ID | 10688204 |
| Domain | CDD:412410 |
| Functional Category | DNA-binding |
| Uniprot ID | Q9PM34 |
| ORF Length (Amino Acid) | 99 |
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| Conservation Analysis |
No. of Species: 60
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1566947 | 1567246 | + | NC_002163.1 | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
| 2 | 1312365 | 1312661 | - | NZ_CP031611.1 | Campylobacter hepaticus |
| 3 | 257970 | 258212 | + | NZ_CP020478.1 | Campylobacter helveticus |
| 4 | 1216734 | 1217027 | - | NZ_CP020867.1 | Campylobacter cuniculorum DSM 23162 = LMG 24588 |
| 5 | 1403833 | 1404075 | + | NZ_CP053849.1 | Campylobacter upsaliensis RM3940 |
| 6 | 72904 | 73197 | + | NZ_CP053825.1 | Campylobacter armoricus |
| 7 | 97755 | 98048 | + | NC_012039.1 | Campylobacter lari RM2100 |
| 8 | 730938 | 731231 | + | NZ_CP063079.1 | Campylobacter peloridis |
| 9 | 106271 | 106564 | + | NZ_CP053848.1 | Campylobacter ornithocola |
| 10 | 100753 | 101046 | + | NZ_CP007773.1 | Campylobacter subantarcticus LMG 24377 |
| 11 | 220487 | 220774 | - | NZ_CP022347.1 | Campylobacter avium LMG 24591 |
| 12 | 96331 | 96600 | + | NZ_CP012543.1 | Campylobacter rectus |
| 13 | 90357 | 90650 | + | NZ_CP007774.1 | Campylobacter volucris LMG 24379 |
| 14 | 2006774 | 2007055 | - | NZ_CP012544.1 | Campylobacter showae |
| 15 | 1504094 | 1504369 | - | NZ_CP012547.1 | Campylobacter pinnipediorum subsp. pinnipediorum |
| 16 | 1818855 | 1819136 | - | NZ_CP053826.1 | Campylobacter curvus |
| 17 | 1720173 | 1720439 | - | NZ_CP012541.1 | Campylobacter concisus |
| 18 | 91235 | 91528 | + | NZ_CP007770.1 | Campylobacter insulaenigrae NCTC 12927 |
| 19 | 1749242 | 1749526 | - | NZ_CP053831.1 | Campylobacter mucosalis |
| 20 | 1694163 | 1694447 | + | NZ_CP019684.1 | Campylobacter sputorum bv. paraureolyticus LMG 11764 |
| 21 | 49629 | 49928 | + | NZ_CP011308.1 | Sulfurovum lithotrophicum |
| 22 | 118614 | 118898 | + | NZ_CP053828.1 | Campylobacter hyointestinalis subsp. lawsonii |
| 23 | 171196 | 171438 | + | NZ_CP063164.1 | Sulfurovum indicum |
| 24 | 2035575 | 2035823 | - | NC_018002.1 | Sulfurospirillum barnesii SES-3 |
| 25 | 1594400 | 1594648 | - | NC_005090.1 | Wolinella succinogenes DSM 1740 |
| 26 | 126641 | 126946 | + | NC_014935.1 | Nitratifractor salsuginis DSM 16511 |
| 27 | 436435 | 436683 | + | NZ_AP014724.1 | Sulfurospirillum cavolei |
| 28 | 1969501 | 1969749 | - | NC_013512.1 | Sulfurospirillum deleyianum DSM 6946 |
| 29 | 172038 | 172325 | + | NZ_AP022847.1 | Nitrosophilus alvini |
| 30 | 1837809 | 1838120 | - | NZ_AP022826.1 | Nitrosophilus labii |
| 31 | 240239 | 240556 | - | NZ_CP012196.1 | Campylobacter gracilis |
| 32 | 1573847 | 1574137 | - | NZ_CP053842.1 | Campylobacter corcagiensis |
| 33 | 52488 | 52763 | + | NZ_CP059443.1 | Campylobacter fetus |
| 34 | 2424759 | 2425007 | - | NZ_CP017111.1 | Sulfurospirillum halorespirans DSM 13726 |
| 35 | 2582296 | 2582544 | - | NZ_CP007201.1 | Sulfurospirillum multivorans DSM 12446 |
| 36 | 1769760 | 1770032 | - | NZ_CP053841.1 | Campylobacter blaseri |
| 37 | 762850 | 763137 | - | NZ_LN907858.1 | Helicobacter typhlonius |
| 38 | 275882 | 276133 | + | NC_014506.1 | Sulfurimonas autotrophica DSM 16294 |
| 39 | 947873 | 948181 | - | NZ_CP063087.1 | Helicobacter winghamensis |
| 40 | 493981 | 494226 | - | NC_014810.2 | Helicobacter felis ATCC 49179 |
| 41 | 555371 | 555628 | + | NZ_CP053833.1 | Arcobacter cloacae |
| 42 | 407802 | 408059 | + | NC_017187.1 | Aliarcobacter butzleri ED-1 |
| 43 | 530576 | 530836 | + | NZ_CP031217.1 | Halarcobacter bivalviorum |
| 44 | 534349 | 534657 | + | NZ_CP031219.1 | Malaciobacter mytili LMG 24559 |
| 45 | 8659 | 8970 | - | NZ_CP021886.1 | Helicobacter apodemus |
| 46 | 496332 | 496589 | + | NZ_CP030944.1 | Arcobacter aquimarinus |
| 47 | 563530 | 563787 | + | NZ_CP053835.1 | Arcobacter defluvii |
| 48 | 1512780 | 1513061 | - | NZ_CP015578.1 | Campylobacter lanienae NCTC 13004 |
| 49 | 684852 | 685109 | + | NZ_CP053840.1 | Arcobacter venerupis |
| 50 | 565911 | 566168 | + | NZ_CP032097.1 | Arcobacter ellisii |
| 51 | 1484174 | 1484440 | + | NZ_CP035946.1 | Campylobacter canadensis |
| 52 | 1338585 | 1338875 | - | NZ_AP023212.1 | Hydrogenimonas urashimensis |
| 53 | 334345 | 334611 | + | NC_007575.1 | Sulfurimonas denitrificans DSM 1251 |
| 54 | 328396 | 328662 | + | NC_004917.1 | Helicobacter hepaticus ATCC 51449 |
| 55 | 538968 | 539252 | - | NZ_AP018676.1 | Helicobacter cinaedi |
| 56 | 1115516 | 1115761 | - | NZ_LS483446.1 | Helicobacter mustelae |
| 57 | 212545 | 212817 | + | NZ_CP041406.1 | Sulfurimonas paralvinellae |
| 58 | 1576518 | 1576778 | - | NC_012115.1 | Nautilia profundicola AmH |
| 59 | 631178 | 631435 | + | NZ_CP053836.1 | Halarcobacter ebronensis |
| 60 | 522393 | 522653 | + | NZ_CP031218.1 | Malaciobacter halophilus |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP053826.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF08245.14 | 0.6 | 36 | 397.0 | same-strand | Mur ligase middle domain |
| 2 | PF02875.23 | 0.62 | 37 | 402 | same-strand | Mur ligase family, glutamate ligase domain |
| 3 | PF13180.8 | 0.65 | 39 | -3 | same-strand | PDZ domain |
| 4 | PF00348.19 | 0.93 | 56 | 1073.0 | same-strand | Polyprenyl synthetase |
| 5 | PF00456.23 | 0.62 | 37 | 1926 | same-strand | Transketolase, thiamine diphosphate binding domain |
| 6 | PF02779.26 | 0.62 | 37 | 1926 | same-strand | Transketolase, pyrimidine binding domain |
| 7 | PF02261.18 | 0.73 | 44 | 56.0 | same-strand | Aspartate decarboxylase |
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