Result : Q9PBY7
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Putative Fis-like DNA-binding protein |
| NCBI Accession ID | AE003849.1 |
| Organism | Xylella fastidiosa (strain 9a5c) |
| Left | 1911707 |
| Right | 1911979 |
| Strand | + |
| Nucleotide Sequence | TTGAACGTAGTACCCTCCCGTCCCGAAGTCAGCCGTGGCTCCCCAAAGTCCCCCCTACGTGAACATGTAGCTCAAGTGGTGCGTCGTTATTTGCGCGATCTTGATGGCTGCGATGTCAATGATCTCTACAACATGGTCCTGCACGAAATGGAGATTCCTCTCTTGGTAGAAGTGCTGAACCATTGTGAAGGGAATCAGAGCCGTGCTGCTGCACTGCTTGGTATTCATCGCGCCACTCTACGTAAGAAACTCAAAGAGTACGGATTAGTTTGA |
| Sequence | MNVVPSRPEVSRGSPKSPLREHVAQVVRRYLRDLDGCDVNDLYNMVLHEMEIPLLVEVLNHCEGNQSRAAALLGIHRATLRKKLKEYGLV |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl22895. Profile Description: Bacterial regulatory protein, Fis family. |
| Pubmed ID | 10910347 |
| Domain | CDD:419882 |
| Functional Category | DNA-binding |
| Uniprot ID | Q9PBY7 |
| ORF Length (Amino Acid) | 90 |
++ More..
| Conservation Analysis |
No. of Species: 172
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 999260 | 999532 | - | NC_004556.1 | Xylella fastidiosa Temecula1 |
| 2 | 1241091 | 1241363 | - | NZ_CP053627.1 | Xylella taiwanensis |
| 3 | 722755 | 723027 | - | NZ_LT853882.1 | Xanthomonas fragariae |
| 4 | 594694 | 594966 | - | NZ_CP028127.1 | Xanthomonas vasicola pv. vasculorum |
| 5 | 671016 | 671288 | - | NZ_CP072268.1 | Xanthomonas euvesicatoria pv. alfalfae |
| 6 | 3521926 | 3522198 | - | NZ_CP018725.1 | Xanthomonas vesicatoria ATCC 35937 |
| 7 | 604326 | 604598 | - | NZ_CP048044.1 | Xanthomonas citri |
| 8 | 616131 | 616403 | - | NZ_CP058243.1 | Xanthomonas campestris pv. raphani |
| 9 | 4264763 | 4265035 | - | NZ_CP016878.1 | Xanthomonas hortorum |
| 10 | 4256613 | 4256879 | - | NZ_CP016878.1 | Xanthomonas hortorum |
| 11 | 3825162 | 3825434 | + | NZ_CP007810.1 | Xanthomonas oryzae pv. oryzicola |
| 12 | 3844743 | 3845015 | + | NZ_CP033326.1 | Xanthomonas cucurbitae |
| 13 | 3462598 | 3462870 | + | NZ_CP012900.1 | Stenotrophomonas acidaminiphila |
| 14 | 1629212 | 1629484 | + | NZ_CP043476.1 | Xanthomonas hyacinthi |
| 15 | 4006296 | 4006571 | + | NZ_LS483377.1 | Stenotrophomonas maltophilia |
| 16 | 2890122 | 2890394 | + | NC_016147.2 | Pseudoxanthomonas spadix BD-a59 |
| 17 | 4166429 | 4166704 | + | NZ_CP037883.1 | Stenotrophomonas indicatrix |
| 18 | 287075 | 287347 | - | NZ_CP046570.1 | Xanthomonas albilineans |
| 19 | 271708 | 271980 | + | NZ_CP060731.1 | Pseudoxanthomonas mexicana |
| 20 | 1184956 | 1185228 | + | NZ_CP042218.1 | Luteimonas granuli |
| 21 | 3478073 | 3478345 | + | NZ_CP029843.1 | Lysobacter maris |
| 22 | 1422318 | 1422581 | + | NZ_CP060711.1 | Thermomonas brevis |
| 23 | 3627410 | 3627682 | - | NZ_CP071517.1 | Lysobacter arenosi |
| 24 | 4927250 | 4927522 | + | NZ_CP011129.1 | Lysobacter antibioticus |
| 25 | 2538427 | 2538657 | - | NZ_CP029556.1 | Lysobacter oculi |
| 26 | 930606 | 930878 | - | NZ_CP023465.1 | Lysobacter capsici |
| 27 | 889031 | 889303 | - | NZ_CP011131.1 | Lysobacter gummosus |
| 28 | 3622730 | 3623002 | + | NZ_CP046603.1 | Lysobacter soli |
| 29 | 527123 | 527347 | - | NZ_CP041242.1 | Lysobacter alkalisoli |
| 30 | 5246334 | 5246606 | + | NZ_AP014940.1 | Lysobacter enzymogenes |
| 31 | 24372 | 24641 | + | NZ_CP023406.1 | Luteimonas chenhongjianii |
| 32 | 1091599 | 1091862 | + | NZ_CP060820.1 | Lysobacter solisilvae (ex Woo and Kim 2020) |
| 33 | 1350014 | 1350268 | + | NC_011852.1 | Glaesserella parasuis SH0165 |
| 34 | 2293219 | 2293437 | - | NZ_LR134327.1 | Aggregatibacter aphrophilus ATCC 33389 |
| 35 | 4153548 | 4153766 | + | NZ_CP008849.1 | Alteromonas australica |
| 36 | 4310478 | 4310696 | + | NZ_CP046670.1 | Alteromonas mediterranea |
| 37 | 4464588 | 4464866 | + | NZ_CP014322.1 | Alteromonas addita |
| 38 | 4748776 | 4749054 | + | NC_015554.1 | Alteromonas naphthalenivorans |
| 39 | 816867 | 817163 | - | NZ_CP018804.1 | Histophilus somni |
| 40 | 101270 | 101503 | - | NZ_CP015031.1 | Basfia succiniciproducens |
| 41 | 496047 | 496280 | - | NC_006300.1 | [Mannheimia] succiniciproducens MBEL55E |
| 42 | 3007841 | 3008059 | + | NZ_CP011041.1 | Pseudoalteromonas tetraodonis |
| 43 | 2989381 | 2989599 | + | NZ_CP011030.1 | Pseudoalteromonas issachenkonii |
| 44 | 3303581 | 3303799 | + | NZ_CP011028.1 | Pseudoalteromonas espejiana DSM 9414 |
| 45 | 3453530 | 3453748 | + | NZ_CP011025.1 | Pseudoalteromonas arctica A 37-1-2 |
| 46 | 2517004 | 2517279 | + | NZ_CP031961.1 | Pseudoalteromonas tunicata |
| 47 | 2329735 | 2329953 | - | NZ_CP019628.1 | Pseudoalteromonas aliena |
| 48 | 1347842 | 1348066 | - | NC_014532.2 | Halomonas elongata DSM 2581 |
| 49 | 3163915 | 3164133 | + | NZ_CP033065.1 | Pseudoalteromonas agarivorans |
| 50 | 3214259 | 3214477 | + | NZ_CP027523.1 | Pseudoalteromonas carrageenovora |
| 51 | 647801 | 648019 | - | NZ_CP032090.1 | Pseudoalteromonas donghaensis |
| 52 | 3243002 | 3243220 | + | NZ_CP023464.1 | Pseudoalteromonas atlantica |
| 53 | 1824332 | 1824631 | - | NZ_CP040863.1 | Rodentibacter heylii |
| 54 | 832172 | 832426 | + | NZ_LS483443.1 | Aggregatibacter segnis ATCC 33393 |
| 55 | 884700 | 884918 | + | NZ_LT906463.1 | Haemophilus pittmaniae |
| 56 | 2452212 | 2452505 | + | NC_006512.1 | Idiomarina loihiensis L2TR |
| 57 | 3876919 | 3877140 | + | NZ_CP059082.1 | Halomonas titanicae |
| 58 | 359309 | 359584 | - | NC_007481.1 | Pseudoalteromonas translucida |
| 59 | 389034 | 389309 | - | NZ_CP011036.1 | Pseudoalteromonas nigrifaciens |
| 60 | 1889400 | 1889678 | + | NZ_CP052766.1 | Alteromonas pelagimontana |
| 61 | 3979097 | 3979375 | + | NZ_CP036536.1 | Salinimonas lutimaris |
| 62 | 166132 | 166410 | - | NZ_CP031769.1 | Salinimonas sediminis |
| 63 | 385845 | 386063 | - | NZ_CP028926.1 | Pasteurella multocida |
| 64 | 1303533 | 1303787 | - | NZ_LT906448.1 | Pasteurella dagmatis |
| 65 | 19557 | 19790 | - | NZ_CP009610.1 | Haemophilus influenzae |
| 66 | 3197885 | 3198103 | + | NZ_CP013187.1 | Pseudoalteromonas phenolica |
| 67 | 222215 | 222502 | + | NZ_CP017689.1 | Thalassotalea crassostreae |
| 68 | 703559 | 703792 | - | NZ_LS483458.1 | Haemophilus haemolyticus |
| 69 | 2987475 | 2987735 | - | NZ_CP018139.1 | Halomonas aestuarii |
| 70 | 1964890 | 1965165 | - | NZ_CP072425.1 | Pseudoalteromonas viridis |
| 71 | 2346867 | 2347091 | + | NZ_CP021435.1 | Halomonas beimenensis |
| 72 | 2206377 | 2206613 | - | NC_008789.1 | Halorhodospira halophila SL1 |
| 73 | 1094972 | 1095253 | - | NC_018691.1 | Alcanivorax dieselolei B5 |
| 74 | 19207 | 19440 | - | NZ_LS483429.1 | Haemophilus aegyptius |
| 75 | 2730294 | 2730512 | + | NZ_CP013106.1 | Halomonas huangheensis |
| 76 | 521763 | 522038 | - | NZ_CP011039.1 | Pseudoalteromonas spongiae UST010723-006 |
| 77 | 1252069 | 1252344 | - | NZ_CP009888.1 | Pseudoalteromonas piratica |
| 78 | 3955079 | 3955348 | - | NZ_CP028897.1 | Dongshaea marina |
| 79 | 2763701 | 2763919 | + | NC_012691.1 | Tolumonas auensis DSM 9187 |
| 80 | 3257268 | 3257486 | + | NZ_CP042382.1 | Pistricoccus aurantiacus |
| 81 | 2643792 | 2644043 | + | NZ_LS483250.1 | Moritella yayanosii |
| 82 | 3567234 | 3567485 | + | NZ_CP044399.1 | Moritella marina ATCC 15381 |
| 83 | 515366 | 515644 | - | NZ_CP015249.1 | Dokdonella koreensis DS-123 |
| 84 | 144269 | 144550 | + | NZ_AP018560.1 | Aerosticca soli |
| 85 | 805612 | 805878 | - | NZ_CP040449.1 | Aeromonas simiae |
| 86 | 827051 | 827317 | - | NZ_LR134376.1 | Aeromonas encheleia |
| 87 | 3978040 | 3978306 | - | NZ_CP044060.1 | Aeromonas veronii |
| 88 | 4379185 | 4379451 | - | NZ_CP051883.1 | Aeromonas salmonicida |
| 89 | 4233149 | 4233415 | - | NZ_CP065745.1 | Aeromonas allosaccharophila |
| 90 | 793690 | 793956 | - | NZ_AP022188.1 | Aeromonas media |
| 91 | 3984254 | 3984520 | + | NZ_CP050851.1 | Aeromonas hydrophila |
| 92 | 1671697 | 1671951 | - | NZ_CP016604.1 | Otariodibacter oris |
| 93 | 1938635 | 1938889 | + | NZ_CP016180.1 | Pasteurella skyensis |
| 94 | 2075575 | 2075808 | - | NZ_CP026364.1 | Proteus hauseri |
| 95 | 485387 | 485620 | - | NZ_CP047349.1 | Proteus terrae subsp. cibarius |
| 96 | 1995100 | 1995318 | - | NZ_CP015029.1 | Frederiksenia canicola |
| 97 | 3673607 | 3673855 | - | NZ_CP031416.1 | Gallaecimonas mangrovi |
| 98 | 2876652 | 2876906 | + | NZ_AP018725.1 | Sulfuriflexus mobilis |
| 99 | 1835465 | 1835731 | + | NC_017856.1 | Methylophaga frappieri |
| 100 | 2103887 | 2104105 | + | NZ_CP007445.1 | Gilliamella apicola |
| 101 | 2958374 | 2958655 | - | NZ_CP021323.1 | Kushneria konosiri |
| 102 | 278522 | 278803 | + | NZ_CP021358.1 | Kushneria marisflavi |
| 103 | 3045140 | 3045418 | + | NZ_CP029347.1 | Saliniradius amylolyticus |
| 104 | 2576865 | 2577164 | + | NC_007963.1 | Chromohalobacter salexigens DSM 3043 |
| 105 | 2129776 | 2129994 | - | NZ_CP041660.1 | Catenovulum sediminis |
| 106 | 3662174 | 3662446 | - | NZ_CP014841.1 | Dyella thiooxydans |
| 107 | 4231838 | 4232056 | + | NZ_CP013124.1 | Pseudomonas mendocina S5.2 |
| 108 | 1611544 | 1611795 | - | NZ_CP006954.1 | Bibersteinia trehalosi USDA-ARS-USMARC-188 |
| 109 | 3078464 | 3078745 | + | NC_011312.1 | Aliivibrio salmonicida LFI1238 |
| 110 | 3622187 | 3622405 | - | NZ_CP022684.1 | Ketobacter alkanivorans |
| 111 | 115353 | 115619 | + | NZ_CP005974.1 | Photobacterium gaetbulicola Gung47 |
| 112 | 263238 | 263471 | - | NZ_CP011367.1 | Thioalkalivibrio versutus |
| 113 | 632238 | 632492 | - | NZ_CP006944.1 | Mannheimia varigena USDA-ARS-USMARC-1312 |
| 114 | 3176182 | 3176403 | + | NC_017033.1 | Frateuria aurantia DSM 6220 |
| 115 | 3779589 | 3779858 | + | NZ_CP047491.1 | Microbulbifer hydrolyticus |
| 116 | 2076434 | 2076688 | + | NZ_CP046531.1 | Mannheimia ovis |
| 117 | 2105504 | 2105758 | + | NZ_CP055305.1 | Mannheimia pernigra |
| 118 | 49105 | 49362 | + | NZ_CP023559.1 | Salinicola tamaricis |
| 119 | 4179414 | 4179632 | + | NZ_CP035704.1 | Pseudolysobacter antarcticus |
| 120 | 3043796 | 3044062 | + | NZ_LT960611.1 | Vibrio tapetis subsp. tapetis |
| 121 | 4207134 | 4207394 | + | NZ_LR215729.2 | Pseudomonas marincola |
| 122 | 2007157 | 2007411 | + | NC_021883.1 | Mannheimia haemolytica USMARC_2286 |
| 123 | 1096482 | 1096736 | + | NZ_CP015425.1 | [Haemophilus] ducreyi |
| 124 | 1013015 | 1013269 | - | NZ_CP061280.1 | Mannheimia bovis |
| 125 | 213003 | 213233 | + | NZ_CP030753.1 | Actinobacillus pleuropneumoniae |
| 126 | 1340468 | 1340698 | - | NZ_CP007715.1 | Actinobacillus equuli subsp. equuli |
| 127 | 1351375 | 1351605 | - | NZ_CP009159.1 | Actinobacillus suis ATCC 33415 |
| 128 | 2639077 | 2639316 | - | NZ_CP038254.1 | Legionella israelensis |
| 129 | 1080611 | 1080841 | + | NZ_CP029206.1 | Actinobacillus porcitonsillarum |
| 130 | 6148112 | 6148330 | + | NC_007645.1 | Hahella chejuensis KCTC 2396 |
| 131 | 516032 | 516253 | + | NZ_LR884459.1 | Psychrobacter arenosus |
| 132 | 3095256 | 3095501 | - | NZ_CP011412.1 | Sedimenticola thiotaurini |
| 133 | 702660 | 702920 | - | NZ_CP023272.1 | Pseudomonas lurida |
| 134 | 912835 | 913095 | - | NZ_CP054205.1 | Pseudomonas rhodesiae |
| 135 | 492325 | 492579 | - | NZ_AP018724.1 | Sulfurivermis fontis |
| 136 | 674489 | 674749 | - | NZ_CP010896.1 | Pseudomonas simiae |
| 137 | 689872 | 690132 | - | NZ_CP027756.1 | Pseudomonas synxantha |
| 138 | 712392 | 712652 | - | NZ_CP018420.1 | Pseudomonas veronii |
| 139 | 746206 | 746466 | - | NZ_CP062253.1 | Pseudomonas gozinkensis |
| 140 | 693245 | 693505 | - | NZ_CP027723.1 | Pseudomonas orientalis |
| 141 | 3909580 | 3909840 | + | NZ_CP014205.2 | Pseudomonas glycinae |
| 142 | 781166 | 781426 | - | NZ_LS999205.1 | Pseudomonas protegens CHA0 |
| 143 | 1965649 | 1965930 | - | NZ_LR134374.1 | Legionella spiritensis |
| 144 | 580410 | 580628 | - | NZ_CP051183.1 | Bermanella marisrubri |
| 145 | 724820 | 725080 | - | NZ_CP061079.1 | Pseudomonas chlororaphis |
| 146 | 1761710 | 1761973 | - | NC_022664.1 | Spiribacter curvatus |
| 147 | 585057 | 585284 | + | NZ_CP013742.1 | Legionella pneumophila |
| 148 | 876136 | 876363 | + | NZ_LT906442.1 | Legionella waltersii |
| 149 | 5861549 | 5861809 | + | NZ_CP012400.2 | Pseudomonas yamanorum |
| 150 | 736310 | 736570 | - | NZ_CP062252.1 | Pseudomonas allokribbensis |
| 151 | 3408500 | 3408760 | + | NZ_CP048810.1 | Pseudomonas bijieensis |
| 152 | 777126 | 777386 | - | NZ_CP034725.1 | Pseudomonas brassicacearum |
| 153 | 717249 | 717509 | - | NZ_CP035088.1 | Pseudomonas viciae |
| 154 | 756236 | 756496 | - | NZ_CP029608.1 | Pseudomonas kribbensis |
| 155 | 5336373 | 5336633 | + | NZ_CP070503.1 | Pseudomonas atacamensis |
| 156 | 379049 | 379318 | - | NC_020541.1 | Rhodanobacter denitrificans |
| 157 | 417299 | 417565 | - | NZ_CP064030.1 | Dyella caseinilytica |
| 158 | 349180 | 349446 | + | NZ_CP027860.1 | Ahniella affigens |
| 159 | 83225 | 83485 | + | NZ_CP049044.1 | Pseudomonas psychrophila |
| 160 | 411956 | 412183 | + | NZ_CP016397.1 | Legionella clemsonensis |
| 161 | 2685080 | 2685307 | + | NZ_CP011971.1 | Steroidobacter denitrificans |
| 162 | 2626133 | 2626378 | - | NZ_LT906451.1 | Legionella lansingensis |
| 163 | 3092044 | 3092283 | + | NZ_AP014545.1 | Amphritea japonica ATCC BAA-1530 |
| 164 | 3062530 | 3062775 | - | NZ_LN681225.1 | Legionella hackeliae |
| 165 | 587193 | 587453 | - | NZ_CP014870.1 | Pseudomonas silesiensis |
| 166 | 3193996 | 3194256 | + | NZ_CP005960.1 | Pseudomonas mandelii JR-1 |
| 167 | 2045842 | 2046111 | + | NZ_CP031222.1 | Aquirhabdus parva |
| 168 | 610212 | 610445 | - | NZ_CP041046.1 | Luteibacter pinisoli |
| 169 | 2033372 | 2033632 | + | NC_007969.1 | Psychrobacter cryohalolentis K5 |
| 170 | 1599734 | 1600000 | - | NC_021291.1 | Spiribacter salinus M19-40 |
| 171 | 985296 | 985529 | + | NZ_CP017480.1 | Luteibacter rhizovicinus DSM 16549 |
| 172 | 2157953 | 2158174 | - | NZ_CP058952.1 | Chitinibacter fontanus |
| 173 | 3278645 | 3278878 | + | NZ_CP040709.1 | Inhella inkyongensis |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP008849.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01808.20 | 0.62 | 106 | 84.0 | same-strand | AICARFT/IMPCHase bienzyme |
| 2 | PF02142.24 | 0.62 | 107 | 84 | same-strand | MGS-like domain |
| 3 | PF06325.15 | 0.78 | 135 | 1295 | same-strand | Ribosomal protein L11 methyltransferase (PrmA) |
| 4 | PF02655.16 | 0.62 | 107 | 2783 | same-strand | ATP-grasp domain |
| 5 | PF01207.19 | 0.68 | 117 | 57 | same-strand | Dihydrouridine synthase (Dus) |
++ More..