ProsmORF-pred
Result : Q9KFX8
Protein Information
Information Type Description
Protein name CRISPR-associated endonuclease Cas2 (EC 3.1.-.-)
NCBI Accession ID BA000004.3
Organism Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
Left 365633
Right 365923
Strand +
Nucleotide Sequence ATGCTTGTTTTAATTACGTATGATGTCCAAACCTCAAGCATGGGAGGCACGAAAAGGCTTCGAAAAGTGGCCAAAGCGTGCCAAAATTATGGACAACGAGTGCAAAACTCTGTCTTTGAGTGCATTGTGGATTCAACTCAATTAACGTCGTTGAAATTAGAACTCACTAGTTTAATTGATGAAGAAAAAGACAGTTTGCGCATCTACCGATTAGGAAACAACTATAAAACCAAAGTAGAGCATATTGGAGCCAAGCCATCTATCGATTTAGAGGACCCTCTTATCTTTTAA
Sequence MLVLITYDVQTSSMGGTKRLRKVAKACQNYGQRVQNSVFECIVDSTQLTSLKLELTSLIDEEKDSLRIYRLGNNYKTKVEHIGAKPSIDLEDPLIF
Source of smORF Swiss-Prot
Function CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Involved in the integration of spacer DNA into the CRISPR cassette (By similarity). Functions as a dsDNA-specific endonuclease, acting on circular and linear DNA; has no activity on ssRNA or ssDNA. {ECO:0000250, ECO:0000269|Pubmed:22942283}.
Pubmed ID 11058132 22942283
Domain CDD:416272
Functional Category Metal-binding
Uniprot ID Q9KFX8
ORF Length (Amino Acid) 96
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Conservation Analysis
Conservation Analysis
No. of Species: 193
Sr.No. Left Position Right Position Strand NCBI Accession id Species Name
1 365633 365923 + NC_002570.2 Alkalihalobacillus halodurans C-125
2 3249953 3250243 - NZ_CP014167.1 Paenibacillus yonginensis
3 264959 265249 + NZ_CP017703.1 Aeribacillus pallidus
4 5104706 5104996 - NZ_CP026363.1 Brevibacillus agri
5 2223865 2224155 + NZ_CP026363.1 Brevibacillus agri
6 1674793 1675083 - NZ_CP011361.2 Salimicrobium jeotgali
7 1542073 1542363 - NZ_CP009709.1 Weizmannia coagulans DSM 1 = ATCC 7050
8 3531721 3532011 - NZ_CP065425.1 Heyndrickxia vini
9 2605637 2605927 + NZ_CP034248.1 Paenibacillus lentus
10 1386790 1387080 + NZ_CP009286.1 Paenibacillus stellifer
11 2062375 2062665 + NZ_CP019659.1 Paenibacillus larvae subsp. larvae
12 1516609 1516899 + NZ_CP009285.1 Paenibacillus borealis
13 3235097 3235387 + NZ_CP011058.1 Paenibacillus beijingensis
14 693774 694064 - NZ_CP025286.1 Ethanoligenens harbinense YUAN-3
15 696526 696807 + NZ_CP013652.1 Paenibacillus naphthalenovorans
16 489578 489868 + NZ_CP035492.1 Paenibacillus protaetiae
17 1613467 1613757 + NZ_LN831776.1 Paenibacillus riograndensis SBR5
18 1497548 1497838 + NZ_CP009288.1 Paenibacillus durus
19 172724 173014 + NC_010556.1 Exiguobacterium sibiricum 255-15
20 1926163 1926396 + NC_016584.1 Desulfosporosinus orientis DSM 765
21 2361388 2361672 + NC_011830.1 Desulfitobacterium hafniense DCB-2
22 3836631 3836915 - NC_013216.1 Desulfofarcimen acetoxidans DSM 771
23 1800182 1800472 + NC_011898.1 Ruminiclostridium cellulolyticum H10
24 1537593 1537877 + NC_018068.1 Desulfosporosinus acidiphilus SJ4
25 3996918 3997208 + NC_016641.1 Paenibacillus terrae HPL-003
26 1435103 1435387 + NC_015589.1 Desulfotomaculum ruminis DSM 2154
27 1519008 1519298 - NC_014414.1 Parvularcula bermudensis HTCC2503
28 1965899 1966189 + NZ_CP036170.1 [Clostridium] scindens ATCC 35704
29 1384251 1384541 - NC_014960.1 Anaerolinea thermophila UNI-1
30 601110 601400 + NZ_CP022464.2 Enterocloster bolteae
31 3026903 3027193 + NZ_CP017786.1 Bacillus xiamenensis
32 3338075 3338365 - NZ_CP020028.1 Paenibacillus kribbensis
33 2314960 2315250 + NZ_AP023367.1 Anaerocolumna cellulosilytica
34 4960204 4960494 + NZ_CP054614.1 Paenibacillus barcinonensis
35 2189126 2189416 - NC_015437.1 Selenomonas sputigena ATCC 35185
36 169986 170276 + NC_017311.1 Desulfovibrio vulgaris RCH1
37 1943726 1944016 - NZ_CP046908.1 Stappia indica
38 1400721 1401011 + NZ_CP021023.1 Sedimentisphaera salicampi
39 1589316 1589606 + NC_012796.1 Desulfovibrio magneticus RS-1
40 2459850 2460140 + NZ_CP012946.1 Blastochloris viridis
41 2133835 2134125 - NC_015732.1 Treponema caldarium DSM 7334
42 5677804 5678094 - NZ_CP039126.1 Blautia producta
43 3375978 3376268 + NZ_CP046570.1 Xanthomonas albilineans
44 6141467 6141733 - NZ_CP048209.1 Paenibacillus lycopersici
45 615276 615566 - NC_023035.1 Salinispira pacifica
46 2065827 2066117 - NZ_CP022196.1 Celeribacter ethanolicus
47 2486859 2487149 - NZ_CP044331.1 Methylocystis parvus
48 2672258 2672548 + NZ_AP018437.1 Pelolinea submarina
49 1701077 1701367 + NC_014972.1 Desulfobulbus propionicus DSM 2032
50 3947009 3947299 + NZ_CP033326.1 Xanthomonas cucurbitae
51 3888753 3889043 - NZ_CP036259.1 Sporomusa termitida
52 3334331 3334621 + NZ_CP027002.1 [Ruminococcus] gnavus ATCC 29149
53 1762246 1762536 + NC_009633.1 Alkaliphilus metalliredigens QYMF
54 2193277 2193567 + NZ_CP054140.1 Desulfobulbus oligotrophicus
55 2764995 2765285 - NZ_LR699011.1 Roseburia hominis
56 2312544 2312834 - NC_013204.1 Eggerthella lenta DSM 2243
57 405939 406229 - NZ_CP041217.1 Saccharibacillus brassicae
58 3519969 3520259 + NC_016633.1 Sphaerochaeta pleomorpha str. Grapes
59 4527935 4528225 + NZ_CP045298.1 Paenibacillus brasilensis
60 4332990 4333280 + NZ_CP028127.1 Xanthomonas vasicola pv. vasculorum
61 1478955 1479245 + NZ_CP043476.1 Xanthomonas hyacinthi
62 988887 989177 + NC_017584.1 Rhodospirillum rubrum F11
63 894365 894670 + NC_015172.1 Syntrophobotulus glycolicus DSM 8271
64 2479169 2479459 + NZ_CP014327.1 Halocynthiibacter arcticus
65 2519129 2519419 + NZ_CP020470.1 Rhodobacter blasticus
66 4369308 4369598 - NZ_CP007810.1 Xanthomonas oryzae pv. oryzicola
67 1449810 1450100 - NC_022997.1 Hyphomicrobium nitrativorans NL23
68 1312755 1313045 + NC_014833.1 Ruminococcus albus 7 = DSM 20455
69 2996636 2996926 - NZ_CP059082.1 Halomonas titanicae
70 31527 31817 + NZ_CP011971.1 Steroidobacter denitrificans
71 316456 316746 + NZ_CP041335.1 Chitinolyticbacter meiyuanensis
72 564264 564554 + NC_008346.1 Syntrophomonas wolfei subsp. wolfei str. Goettingen G311
73 558166 558456 + NZ_LN879430.1 Herbinix luporum
74 863901 864191 - NC_011894.1 Methylobacterium nodulans ORS 2060
75 89037 89327 + NZ_CP009302.1 Berryella intestinalis
76 1628968 1629258 + NZ_CP026538.1 Desulfovibrio carbinolicus
77 1079444 1079734 + NC_009253.1 Desulfotomaculum reducens MI-1
78 838893 839183 + NC_008942.1 Methanocorpusculum labreanum Z
79 1368617 1368907 + NZ_CP010311.1 Geoalkalibacter subterraneus
80 2705251 2705541 - NZ_CP065748.1 Delftia lacustris
81 2746128 2746418 - NZ_CP017420.1 Delftia tsuruhatensis
82 1440963 1441253 + NZ_LR134506.1 Porphyromonas cangingivalis
83 1851893 1852183 + NZ_CP012908.1 Ketogulonicigenium vulgare
84 1062368 1062658 + NZ_CP045423.1 Microvirga thermotolerans
85 1786042 1786332 - NZ_AP021874.1 Desulfosarcina alkanivorans
86 2901985 2902275 - NZ_LN832559.1 Paracoccus aminovorans
87 4242047 4242337 - NC_021184.1 Desulfoscipio gibsoniae DSM 7213
88 3933011 3933301 - NC_020304.1 Desulfocapsa sulfexigens DSM 10523
89 1955105 1955395 - NZ_CP051774.1 Luteolibacter luteus
90 1761586 1761876 + NC_011060.1 Pelodictyon phaeoclathratiforme BU-1
91 1298876 1299166 - NZ_CP009498.1 Endomicrobium proavitum
92 2614592 2614882 + NZ_CP029829.1 Azospirillum ramasamyi
93 2753165 2753455 - NC_007759.1 Syntrophus aciditrophicus SB
94 2512554 2512844 + NZ_CP048436.1 Flavonifractor plautii
95 881739 882029 + NC_013740.1 Acidaminococcus fermentans DSM 20731
96 1292860 1293150 + NC_005085.1 Chromobacterium violaceum ATCC 12472
97 2210749 2211039 + NZ_CP019791.1 Anaerohalosphaera lusitana
98 1844314 1844604 + NC_014365.1 Desulfarculus baarsii DSM 2075
99 3118836 3119126 + NC_016147.2 Pseudoxanthomonas spadix BD-a59
100 2846004 2846294 - NZ_CP015249.1 Dokdonella koreensis DS-123
101 3698912 3699202 + NC_015677.1 Ramlibacter tataouinensis TTB310
102 1633227 1633517 - NC_008639.1 Chlorobium phaeobacteroides DSM 266
103 108845 109135 - NZ_CP012661.1 Defluviimonas alba
104 254100 254390 + NZ_CP034413.2 Dysosmobacter welbionis
105 3977372 3977662 + NZ_CP036278.1 Aeoliella mucimassa
106 2123744 2124034 - NC_007406.1 Nitrobacter winogradskyi Nb-255
107 2584668 2584958 - NZ_CP021850.1 Pseudoclostridium thermosuccinogenes
108 1153735 1154025 + NZ_LS991421.1 Lacticaseibacillus zeae
109 2936781 2937071 + NZ_LR884459.1 Psychrobacter arenosus
110 772973 773263 - NC_017080.1 Phycisphaera mikurensis NBRC 102666
111 1911282 1911572 - NZ_CP020612.1 Paracoccus contaminans
112 465367 465657 + NZ_CP016757.1 Cloacibacillus porcorum
113 1337536 1337826 + NZ_CP016757.1 Cloacibacillus porcorum
114 4426262 4426552 + NC_015138.1 Acidovorax avenae subsp. avenae ATCC 19860
115 567522 567812 + NZ_AP021876.1 Desulfosarcina ovata subsp. sediminis
116 2648722 2649012 - NC_019943.1 Methanoregula formicica SMSP
117 1472725 1473015 + NC_007512.1 Pelodictyon luteolum DSM 273
118 1605807 1606097 - NC_014220.1 Syntrophothermus lipocalidus DSM 12680
119 2891048 2891338 + NZ_CP013341.1 Nitrosomonas ureae
120 4406927 4407214 + NC_008576.1 Magnetococcus marinus MC-1
121 5088027 5088317 - NC_015174.1 Rubinisphaera brasiliensis DSM 5305
122 4772697 4772987 - NC_015174.1 Rubinisphaera brasiliensis DSM 5305
123 3240409 3240699 + NZ_CP028339.1 Thauera aromatica K172
124 1548165 1548455 - NZ_CP018839.1 Thauera chlorobenzoica
125 1374155 1374445 - NZ_CP029462.1 Megasphaera stantonii
126 2920276 2920566 - NZ_CP007031.1 Marichromatium purpuratum 984
127 1351772 1352062 + NC_014664.1 Rhodomicrobium vannielii ATCC 17100
128 3546003 3546293 - NZ_CP039543.1 Desulfovibrio marinus
129 1841112 1841405 - NZ_CP033078.1 Vibrio zhugei
130 253277 253567 + NZ_HF545617.1 Ruminococcus bicirculans
131 2437452 2437742 - NC_016112.1 Methylotuvimicrobium alcaliphilum 20Z
132 1515994 1516284 + NC_016112.1 Methylotuvimicrobium alcaliphilum 20Z
133 2414976 2415266 - NZ_CP035467.1 Methylotuvimicrobium buryatense
134 6514137 6514427 - NZ_CP042912.1 Mariniblastus fucicola
135 7862438 7862725 - NZ_CP061800.1 Desulfonema magnum
136 1055243 1055533 - NC_002932.3 Chlorobaculum tepidum TLS
137 1151362 1151652 + NC_015501.1 Porphyromonas asaccharolytica DSM 20707
138 2509877 2510167 + NZ_AP019781.1 Methanoculleus chikugoensis
139 6171364 6171654 - NZ_CP019082.1 Paludisphaera borealis
140 40962 41255 + NC_016630.1 Filifactor alocis ATCC 35896
141 1228398 1228691 + NZ_CP045350.1 Vibrio aquimaris
142 6474781 6475071 + NZ_CP043930.1 Gimesia benthica
143 3369709 3369999 + NC_015572.1 Methylomonas methanica MC09
144 2577243 2577530 - NC_015500.1 Treponema brennaborense DSM 12168
145 2130498 2130788 + NZ_CP036291.1 Pirellulimonas nuda
146 4839861 4840154 - NZ_CP065640.1 Serratia rubidaea
147 911256 911546 + NC_018025.1 Desulfomonile tiedjei DSM 6799
148 1678221 1678514 - NZ_CP031560.1 Dickeya dianthicola
149 420679 420969 + NZ_CP044117.1 Roseomonas mucosa
150 2917032 2917325 + NC_007645.1 Hahella chejuensis KCTC 2396
151 2657597 2657887 + NZ_CP038033.1 Nitrosococcus wardiae
152 1533219 1533509 - NZ_LR134523.1 Peptoniphilus ivorii
153 96649 96942 + NZ_AP018722.1 Thiomicrorhabdus aquaedulcis
154 684633 684923 - NC_002977.6 Methylococcus capsulatus str. Bath
155 404933 405226 + NZ_CP034543.1 Streptococcus periodonticum
156 2009885 2010175 + NC_013960.1 Nitrosococcus halophilus Nc 4
157 1730620 1730913 - NC_014500.1 Dickeya dadantii 3937
158 582538 582831 - NZ_CP015031.1 Basfia succiniciproducens
159 957194 957487 - NC_006300.1 [Mannheimia] succiniciproducens MBEL55E
160 2802455 2802748 - NC_010995.1 Cellvibrio japonicus Ueda107
161 781895 782188 - NZ_LR134341.1 Streptococcus pseudoporcinus
162 406045 406335 - NZ_CP017237.1 Moorella thermoacetica
163 1172939 1173232 + NZ_LR134293.1 Streptococcus canis
164 1639070 1639363 + NZ_CP031325.1 Neisseria polysaccharea
165 3491180 3491473 + NC_016803.1 Pseudodesulfovibrio mercurii
166 35541 35831 - NZ_CP069440.1 Phocaeicola coprophilus
167 2351468 2351761 - NC_020888.1 Thalassolituus oleivorans MIL-1
168 1474989 1475282 - NZ_CP065061.1 Streptococcus equi subsp. zooepidemicus
169 394321 394614 + NZ_CP031253.1 Neisseria lactamica
170 1355102 1355395 - NZ_LT906439.1 Streptococcus merionis
171 545980 546273 - NZ_CP046400.1 Pseudodesulfovibrio cashew
172 418604 418894 - NC_017958.1 Tistrella mobilis KA081020-065
173 1014062 1014355 - NZ_CP014835.1 Streptococcus halotolerans
174 1680364 1680654 + NZ_CP021255.1 Desulfobulbus oralis
175 506470 506763 + NZ_CP012047.1 Tetragenococcus halophilus
176 1639789 1640082 + NZ_CP046027.1 Neisseria brasiliensis
177 834285 834575 + NZ_CP011381.2 Moraxella bovoculi
178 903483 903773 + NZ_CP011158.1 Moraxella ovis
179 1723832 1724125 + NZ_CP055305.1 Mannheimia pernigra
180 1591945 1592238 - NZ_LR134524.1 Peptoniphilus harei
181 571777 572067 - NZ_LR699004.1 Phocaeicola dorei
182 709146 709439 - NZ_LR134365.1 Cardiobacterium hominis
183 1098091 1098381 - NZ_CP025612.1 Niveispirillum cyanobacteriorum
184 632123 632416 + NC_007947.1 Methylobacillus flagellatus KT
185 1786551 1786841 - NZ_CP030265.1 Skermanella pratensis
186 1158940 1159233 + NZ_CP029206.1 Actinobacillus porcitonsillarum
187 1390835 1391068 + NZ_CP018058.1 Geobacillus thermocatenulatus
188 3266532 3266819 - NC_012560.1 Azotobacter vinelandii DJ
189 581320 581613 + NZ_CP039887.1 Neisseria subflava
190 1096743 1097036 - NZ_CP072524.1 Neisseria sicca
191 1936631 1936924 - NZ_CP022278.1 Neisseria chenwenguii
192 233725 234018 + NZ_CP031252.1 Neisseria elongata
193 667675 667968 - NZ_LR134327.1 Aggregatibacter aphrophilus ATCC 33389
194 1474197 1474490 - NZ_CP059567.1 Neisseria shayeganii
195 188995 189288 - NZ_LT906434.1 Neisseria zoodegmatis
196 1889746 1890039 - NZ_LR134516.1 Neisseria animaloris
197 526457 526750 + NZ_CP039886.1 Neisseria flavescens
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Neighborhood Conservation Analysis
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Conservation Analysis
Neighborhood Representative Chosen(Species): NC_002570.2
Sr.No. Domain Co-occurrence Frequency No. of species in which domain occurs with smORF Median distance b/w smORF and domain bearing ORFs Orientation relative to smORF PFAM Information
1 PF09704.12 0.76 147 4438.5 same-strand CRISPR-associated protein (Cas Cas5)
2 PF09709.12 0.9 174 2607.0 same-strand CRISPR-associated protein (Cas Csd1)
3 PF05107.14 0.96 185 1709.0 same-strand CRISPR-associated protein Cas7
4 PF01930.19 0.95 183 1040.5 same-strand Domain of unknown function DUF83
5 PF01867.18 0.98 189 11.0 same-strand CRISPR associated protein Cas1
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