Result : Q9KCC6
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Transcription attenuation protein MtrB (Trp RNA-binding attenuation protein) (TRAP) (Tryptophan RNA-binding attenuator protein) |
| NCBI Accession ID | BA000004.3 |
| Organism | Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) |
| Left | 1723027 |
| Right | 1723257 |
| Strand | + |
| Nucleotide Sequence | ATGAACGTGGGGGATAACTCAAACTTTTTTGTCATAAAAGCAAAGGAAAACGGTGTGAACGTTTTTGGGATGACACGTGGGACGGATACACGCTTTCACCACTCAGAAAAGCTGGATAAAGGTGAAGTCATGATCGCACAATTTACCGAACACACGTCAGCGGTAAAAATTAGAGGAAAGGCGATCATTCAAACAAGCTATGGCACGCTAGATACGGAGAAAGATGAATAA |
| Sequence | MNVGDNSNFFVIKAKENGVNVFGMTRGTDTRFHHSEKLDKGEVMIAQFTEHTSAVKIRGKAIIQTSYGTLDTEKDE |
| Source of smORF | Swiss-Prot |
| Function | Required for transcription attenuation control in the Trp operon. This trans-acting factor seems to recognize a 10 bases nucleotide sequence in the Trp leader transcript causing transcription termination. Binds the leader RNA only in presence of L-tryptophan (By similarity). {ECO:0000250}. |
| Pubmed ID | 11058132 |
| Domain | CDD:421508 |
| Functional Category | RNA-binding |
| Uniprot ID | Q9KCC6 |
| ORF Length (Amino Acid) | 76 |
++ More..
| Conservation Analysis |
No. of Species: 172
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1723027 | 1723257 | + | NC_002570.2 | Alkalihalobacillus halodurans C-125 |
| 2 | 1483294 | 1483512 | + | NC_013791.2 | Alkalihalobacillus pseudofirmus OF4 |
| 3 | 4248678 | 4248917 | + | NZ_CP017705.1 | Brevibacillus laterosporus DSM 25 |
| 4 | 4941738 | 4941956 | - | NZ_CP063356.1 | Anaerobacillus isosaccharinicus |
| 5 | 2156562 | 2156786 | + | NZ_CP020772.1 | Halobacillus mangrovi |
| 6 | 2272830 | 2273057 | - | NC_017668.1 | Halobacillus halophilus DSM 2266 |
| 7 | 2542209 | 2542403 | - | NZ_CP015378.1 | Fictibacillus phosphorivorans |
| 8 | 1867806 | 1868021 | + | NZ_CP017962.1 | Virgibacillus halodenitrificans |
| 9 | 4150643 | 4150834 | - | NZ_CP011388.1 | Paenibacillus swuensis |
| 10 | 1729993 | 1730220 | + | NZ_CP011937.1 | Bacillus velezensis |
| 11 | 2269727 | 2269954 | - | NZ_CP053376.1 | Bacillus amyloliquefaciens |
| 12 | 2384534 | 2384761 | - | NC_000964.3 | Bacillus subtilis subsp. subtilis str. 168 |
| 13 | 2256633 | 2256860 | - | NZ_CP048852.1 | Bacillus tequilensis |
| 14 | 2253830 | 2254057 | - | NZ_CP034943.1 | Bacillus subtilis subsp. spizizenii ATCC 6633 = JCM 2499 |
| 15 | 2193694 | 2193921 | - | NZ_CP013984.1 | Bacillus inaquosorum |
| 16 | 2182473 | 2182700 | - | NZ_CP051464.1 | Bacillus mojavensis |
| 17 | 3871858 | 3872085 | + | NZ_CP029364.1 | Bacillus halotolerans |
| 18 | 1234119 | 1234313 | + | NZ_CP011361.2 | Salimicrobium jeotgali |
| 19 | 3015581 | 3015811 | - | NZ_AP017312.1 | Aneurinibacillus soli |
| 20 | 2305302 | 2305496 | + | NZ_CP022437.1 | Virgibacillus necropolis |
| 21 | 4273688 | 4273903 | - | NZ_CP034235.1 | Paenibacillus psychroresistens |
| 22 | 2341724 | 2341951 | - | NZ_CP033052.1 | Bacillus vallismortis |
| 23 | 3568419 | 3568646 | - | NZ_CP017703.1 | Aeribacillus pallidus |
| 24 | 1247127 | 1247321 | + | NZ_CP034118.1 | Staphylospora marina |
| 25 | 2748877 | 2749098 | - | NZ_CP018866.1 | Sutcliffiella cohnii |
| 26 | 1760763 | 1760990 | + | NZ_CP048103.1 | Kroppenstedtia eburnea |
| 27 | 3069590 | 3069817 | + | NZ_CP022315.1 | Virgibacillus phasianinus |
| 28 | 1004195 | 1004419 | + | NZ_CP014342.1 | Geobacillus subterraneus |
| 29 | 3620907 | 3621131 | + | NZ_CP018622.1 | Virgibacillus dokdonensis |
| 30 | 1828569 | 1828793 | - | NZ_CP064060.1 | Anoxybacillus caldiproteolyticus |
| 31 | 1827579 | 1827803 | - | NC_004193.1 | Oceanobacillus iheyensis HTE831 |
| 32 | 2254796 | 2255020 | - | NC_006510.1 | Geobacillus kaustophilus HTA426 |
| 33 | 1465713 | 1465937 | - | NZ_CP061470.1 | Geobacillus zalihae |
| 34 | 1697443 | 1697667 | + | NZ_CP018058.1 | Geobacillus thermocatenulatus |
| 35 | 32009 | 32233 | + | NZ_CP061472.1 | Geobacillus thermoleovorans |
| 36 | 3709775 | 3709999 | + | NZ_CP061472.1 | Geobacillus thermoleovorans |
| 37 | 1672224 | 1672448 | + | NZ_CP070511.1 | Parageobacillus toebii |
| 38 | 2579133 | 2579369 | - | NZ_LT603683.1 | Bacillus glycinifermentans |
| 39 | 2531589 | 2531810 | + | NZ_CP026520.1 | Paenibacillus chitinolyticus |
| 40 | 2326982 | 2327203 | - | NZ_CP015438.1 | Anoxybacillus amylolyticus |
| 41 | 3205957 | 3206157 | + | NZ_CP043404.1 | Bacillus safensis |
| 42 | 3297044 | 3297244 | + | NZ_CP017786.1 | Bacillus xiamenensis |
| 43 | 2082679 | 2082879 | - | NZ_CP011150.1 | Bacillus altitudinis |
| 44 | 3169154 | 3169411 | + | NZ_CP034248.1 | Paenibacillus lentus |
| 45 | 3498741 | 3498962 | + | NC_017672.3 | Paenibacillus mucilaginosus K02 |
| 46 | 1582581 | 1582781 | + | NZ_CP016020.1 | Bacillus weihaiensis |
| 47 | 3623905 | 3624135 | - | NZ_LR134338.1 | Brevibacillus brevis |
| 48 | 1537195 | 1537413 | + | NZ_CP012502.1 | Bacillus beveridgei |
| 49 | 3438094 | 3438318 | - | NZ_CP026363.1 | Brevibacillus agri |
| 50 | 2457471 | 2457707 | - | NZ_CP023665.1 | Bacillus paralicheniformis |
| 51 | 1851232 | 1851462 | - | NZ_CP009416.1 | Jeotgalibacillus malaysiensis |
| 52 | 1459931 | 1460149 | + | NZ_CP019659.1 | Paenibacillus larvae subsp. larvae |
| 53 | 5105578 | 5105772 | - | NC_016641.1 | Paenibacillus terrae HPL-003 |
| 54 | 3120146 | 3120349 | - | NC_022524.1 | Bacillus infantis NRRL B-14911 |
| 55 | 2355312 | 2355548 | - | NC_006270.3 | Bacillus licheniformis DSM 13 = ATCC 14580 |
| 56 | 2044013 | 2044234 | + | NC_014829.1 | Evansella cellulosilytica DSM 2522 |
| 57 | 1656840 | 1657037 | - | NZ_CP039710.1 | Thermoactinomyces vulgaris |
| 58 | 2835222 | 2835443 | + | NZ_CP019699.1 | Novibacillus thermophilus |
| 59 | 3629133 | 3629369 | + | NZ_CP041305.1 | Cytobacillus ciccensis |
| 60 | 3705254 | 3705487 | + | NZ_CP022983.1 | Cytobacillus kochii |
| 61 | 2247244 | 2247435 | - | NZ_CP013652.1 | Paenibacillus naphthalenovorans |
| 62 | 5544193 | 5544411 | - | NZ_CP045298.1 | Paenibacillus brasilensis |
| 63 | 943928 | 944134 | - | NZ_CP013862.1 | Lentibacillus amyloliquefaciens |
| 64 | 309626 | 309844 | + | NZ_CP031092.1 | Salicibibacter kimchii |
| 65 | 214410 | 214607 | + | NZ_CP035485.1 | Salicibibacter halophilus |
| 66 | 2318311 | 2318529 | + | NZ_CP020028.1 | Paenibacillus kribbensis |
| 67 | 4110093 | 4110323 | - | NZ_CP024035.1 | Priestia aryabhattai |
| 68 | 1545129 | 1545320 | + | NZ_CP048104.1 | Kroppenstedtia pulmonis |
| 69 | 2053728 | 2053916 | - | NZ_CP012024.1 | Bacillus smithii |
| 70 | 1949571 | 1949810 | + | NZ_LS483476.1 | Lederbergia lentus |
| 71 | 3195713 | 3195937 | - | NZ_CP016622.1 | Parageobacillus thermoglucosidasius |
| 72 | 1677775 | 1677999 | + | NZ_CP031223.1 | Psychrobacillus glaciei |
| 73 | 1548617 | 1548841 | - | NZ_CP035492.1 | Paenibacillus protaetiae |
| 74 | 2802600 | 2802821 | - | NZ_CP014616.1 | Sporosarcina psychrophila |
| 75 | 1713399 | 1713623 | - | NZ_CP012152.1 | Anoxybacillus gonensis |
| 76 | 3153303 | 3153539 | - | NZ_CP042593.1 | Bacillus dafuensis |
| 77 | 3280130 | 3280360 | - | NZ_CP022121.1 | Dehalobacterium formicoaceticum |
| 78 | 4610033 | 4610227 | - | NZ_CP009428.1 | Paenibacillus odorifer |
| 79 | 1916804 | 1917037 | - | NZ_CP017237.1 | Moorella thermoacetica |
| 80 | 2450475 | 2450723 | + | NZ_CP034346.1 | Paenibacillus lutimineralis |
| 81 | 1147999 | 1148193 | - | NZ_CP045295.1 | Paenibacillus cellulositrophicus |
| 82 | 1891497 | 1891718 | - | NZ_CP038015.1 | Paenisporosarcina antarctica |
| 83 | 6593869 | 6594117 | - | NZ_CP048429.1 | Paenibacillus jilunlii |
| 84 | 4646996 | 4647244 | - | NZ_CP009287.1 | Paenibacillus graminis |
| 85 | 4365598 | 4365816 | - | NZ_CP021780.1 | Paenibacillus donghaensis |
| 86 | 5289206 | 5289433 | - | NZ_CP009285.1 | Paenibacillus borealis |
| 87 | 1008346 | 1008567 | - | NZ_CP048286.1 | Paenibacillus rhizovicinus |
| 88 | 826676 | 826903 | + | NC_013216.1 | Desulfofarcimen acetoxidans DSM 771 |
| 89 | 1953673 | 1953867 | - | NZ_CP033433.1 | Cohnella candidum |
| 90 | 3941137 | 3941328 | - | NZ_CP009288.1 | Paenibacillus durus |
| 91 | 6717305 | 6717553 | - | NZ_CP068595.1 | Paenibacillus sonchi |
| 92 | 5203417 | 5203665 | - | NZ_LN831776.1 | Paenibacillus riograndensis SBR5 |
| 93 | 3222340 | 3222561 | + | NZ_CP015108.1 | Sporosarcina ureae |
| 94 | 3331661 | 3331879 | - | NZ_CP010820.1 | Lysinibacillus fusiformis |
| 95 | 2999525 | 2999746 | + | NZ_AP019400.1 | Cohnella abietis |
| 96 | 1952751 | 1952948 | - | NC_019897.1 | Thermobacillus composti KWC4 |
| 97 | 1571759 | 1571977 | + | NZ_CP006837.1 | Lysinibacillus varians |
| 98 | 3109015 | 3109233 | - | NZ_CP019980.1 | Lysinibacillus sphaericus |
| 99 | 195748 | 195942 | - | NZ_CP041217.1 | Saccharibacillus brassicae |
| 100 | 5481759 | 5481971 | - | NZ_CP011058.1 | Paenibacillus beijingensis |
| 101 | 4302666 | 4302854 | - | NZ_CP021434.1 | Tumebacillus avium |
| 102 | 4296145 | 4296390 | + | NZ_CP068053.1 | Peribacillus psychrosaccharolyticus |
| 103 | 1967388 | 1967609 | - | NZ_CP016540.2 | Planococcus versutus |
| 104 | 3145501 | 3145722 | + | NZ_CP013661.2 | Planococcus kocurii |
| 105 | 2066447 | 2066668 | - | NZ_CP019401.1 | Planococcus faecalis |
| 106 | 1506537 | 1506752 | + | NZ_CP024955.1 | Kyrpidia spormannii |
| 107 | 1775922 | 1776137 | - | NC_014098.1 | Kyrpidia tusciae DSM 2912 |
| 108 | 1157554 | 1157775 | - | NZ_CP054614.1 | Paenibacillus barcinonensis |
| 109 | 1971484 | 1971705 | - | NZ_CP016543.2 | Planococcus donghaensis |
| 110 | 2026018 | 2026239 | - | NZ_CP016537.2 | Planococcus halocryophilus |
| 111 | 2238572 | 2238793 | - | NZ_CP016534.2 | Planococcus antarcticus DSM 14505 |
| 112 | 2964712 | 2964942 | - | NZ_CP045293.1 | Paenibacillus guangzhouensis |
| 113 | 2548614 | 2548826 | - | NZ_AP019308.1 | Paenibacillus baekrokdamisoli |
| 114 | 4231717 | 4231941 | - | NZ_CP043611.1 | Paenibacillus antarcticus |
| 115 | 1014804 | 1014992 | + | NC_007503.1 | Carboxydothermus hydrogenoformans Z-2901 |
| 116 | 3175025 | 3175246 | + | NZ_CP034437.1 | Paenibacillus albus |
| 117 | 2127497 | 2127721 | + | NZ_CP022657.1 | Tumebacillus algifaecis |
| 118 | 3637814 | 3638062 | - | NZ_CP009286.1 | Paenibacillus stellifer |
| 119 | 1749428 | 1749628 | - | NZ_AP021853.1 | Sporolactobacillus terrae |
| 120 | 3925262 | 3925498 | - | NZ_CP013023.1 | Paenibacillus bovis |
| 121 | 3464568 | 3464762 | - | NZ_CP004078.1 | Paenibacillus sabinae T27 |
| 122 | 1534159 | 1534380 | - | NZ_CP038012.1 | Sporosarcina pasteurii |
| 123 | 2659250 | 2659474 | + | NZ_CP048209.1 | Paenibacillus lycopersici |
| 124 | 2291528 | 2291749 | - | NZ_CP017560.1 | Sporosarcina ureilytica |
| 125 | 907999 | 908223 | - | NZ_CP016809.1 | Paenibacillus ihbetae |
| 126 | 1826633 | 1826854 | - | NZ_CP016539.2 | Planococcus plakortidis |
| 127 | 1849070 | 1849273 | - | NZ_CP016538.2 | Planococcus maritimus |
| 128 | 1854838 | 1855041 | - | NZ_CP059540.1 | Planococcus maritimus |
| 129 | 1602859 | 1603059 | - | NZ_CP013659.2 | Planococcus rifietoensis |
| 130 | 1370574 | 1370771 | + | NC_015589.1 | Desulfotomaculum ruminis DSM 2154 |
| 131 | 2477197 | 2477430 | - | NC_021184.1 | Desulfoscipio gibsoniae DSM 7213 |
| 132 | 494477 | 494695 | - | NZ_CP030926.1 | Peribacillus butanolivorans |
| 133 | 4659300 | 4659491 | + | NZ_CP017704.1 | Peribacillus simplex NBRC 15720 = DSM 1321 |
| 134 | 447343 | 447537 | + | NC_013385.1 | Ammonifex degensii KC4 |
| 135 | 1773753 | 1773950 | - | NC_014220.1 | Syntrophothermus lipocalidus DSM 12680 |
| 136 | 70945 | 71178 | - | NC_010337.2 | Heliomicrobium modesticaldum Ice1 |
| 137 | 977242 | 977439 | + | NC_018870.1 | Thermacetogenium phaeum DSM 12270 |
| 138 | 492756 | 492989 | - | NZ_CP045875.1 | Heliorestis convoluta |
| 139 | 1523737 | 1523952 | + | NZ_AP014924.1 | Limnochorda pilosa |
| 140 | 2316061 | 2316246 | - | NZ_CP023704.1 | Caldibacillus thermoamylovorans |
| 141 | 2460032 | 2460226 | - | NZ_CP019698.1 | Desulfotomaculum ferrireducens |
| 142 | 2560410 | 2560643 | - | NC_016627.1 | Acetivibrio clariflavus DSM 19732 |
| 143 | 1280177 | 1280389 | + | NC_018704.1 | Amphibacillus xylanus NBRC 15112 |
| 144 | 1775967 | 1776200 | + | NC_011898.1 | Ruminiclostridium cellulolyticum H10 |
| 145 | 789713 | 789910 | + | NC_016148.1 | Thermovirga lienii DSM 17291 |
| 146 | 1166781 | 1166975 | + | NZ_CP016502.1 | Acetivibrio thermocellus DSM 2360 |
| 147 | 1412495 | 1412743 | - | NC_014392.1 | Caldicellulosiruptor obsidiansis OB47 |
| 148 | 1465912 | 1466103 | - | NZ_CP034791.1 | Caldicellulosiruptor changbaiensis |
| 149 | 1973521 | 1973712 | + | NC_009437.1 | Caldicellulosiruptor saccharolyticus DSM 8903 |
| 150 | 398172 | 398393 | + | NC_019978.1 | Halobacteroides halobius DSM 5150 |
| 151 | 2534440 | 2534649 | - | NC_009253.1 | Desulfotomaculum reducens MI-1 |
| 152 | 1142101 | 1142349 | + | NC_014657.1 | Caldicellulosiruptor owensensis OL |
| 153 | 1493101 | 1493349 | - | NC_014652.1 | Caldicellulosiruptor hydrothermalis 108 |
| 154 | 1609235 | 1609438 | - | NC_014720.1 | Caldicellulosiruptor kronotskyensis 2002 |
| 155 | 1355306 | 1355509 | + | NC_012034.1 | Caldicellulosiruptor bescii DSM 6725 |
| 156 | 712748 | 712996 | + | NC_015949.1 | Caldicellulosiruptor lactoaceticus 6A |
| 157 | 1300718 | 1300966 | + | NC_014721.1 | Caldicellulosiruptor kristjanssonii I77R1B |
| 158 | 3244129 | 3244362 | - | NZ_CP061336.1 | Ruminiclostridium herbifermentans |
| 159 | 2763971 | 2764204 | - | NZ_CP059066.1 | Koleobacter methoxysyntrophicus |
| 160 | 2340265 | 2340480 | - | NC_008346.1 | Syntrophomonas wolfei subsp. wolfei str. Goettingen G311 |
| 161 | 1990392 | 1990598 | - | NC_015520.1 | Mahella australiensis 50-1 BON |
| 162 | 326853 | 327071 | + | NC_011899.1 | Halothermothrix orenii H 168 |
| 163 | 2381118 | 2381312 | - | NZ_CP025197.1 | Acetivibrio saccincola |
| 164 | 3190931 | 3191122 | + | NZ_CP045798.1 | Thermoanaerosceptrum fracticalcis |
| 165 | 3408990 | 3409214 | + | NZ_CP016379.1 | Anoxybacter fermentans |
| 166 | 1970158 | 1970394 | - | NC_014378.1 | Acetohalobium arabaticum DSM 5501 |
| 167 | 1746763 | 1746960 | - | NC_017455.1 | Halanaerobium praevalens DSM 2228 |
| 168 | 2022033 | 2022263 | - | NC_014654.1 | Halanaerobium hydrogeniformans |
| 169 | 865649 | 865858 | + | NC_013522.1 | Thermanaerovibrio acidaminovorans DSM 6589 |
| 170 | 2483190 | 2483393 | - | NZ_CP014223.1 | Anaerotignum propionicum DSM 1682 |
| 171 | 606197 | 606427 | - | NZ_CP009709.1 | Weizmannia coagulans DSM 1 = ATCC 7050 |
| 172 | 1390919 | 1391113 | - | NC_015499.1 | Thermodesulfobium narugense DSM 14796 |
| 173 | 1301108 | 1301302 | - | NZ_CP020921.1 | Thermodesulfobium acidiphilum |
| 174 | 1459603 | 1459797 | + | NZ_CP016757.1 | Cloacibacillus porcorum |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP063356.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF09547.12 | 0.6 | 104 | 1433 | same-strand | Stage IV sporulation protein A (spore IV A) |
| 2 | PF01209.20 | 0.73 | 126 | 1017 | same-strand | ubiE/COQ5 methyltransferase family |
| 3 | PF13649.8 | 0.73 | 126 | 1032.5 | same-strand | Methyltransferase domain |
| 4 | PF08241.14 | 0.73 | 126 | 1018 | same-strand | Methyltransferase domain |
| 5 | PF13489.8 | 0.72 | 124 | 1018 | same-strand | Methyltransferase domain |
| 6 | PF08242.14 | 0.74 | 127 | 1410 | same-strand | Methyltransferase domain |
| 7 | PF00216.23 | 0.68 | 117 | 770 | same-strand | Bacterial DNA-binding protein |
++ More..