* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP028926.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF17432.4
|
1.0
|
2
|
5346.0
|
opposite-strand
|
Domain of unknown function (DUF3458 C) ARM repeats
|
2
|
PF01433.22
|
1.0
|
2
|
5346.0
|
opposite-strand
|
Peptidase family M1 domain
|
3
|
PF11940.10
|
1.0
|
2
|
5346.0
|
opposite-strand
|
Domain of unknown function (DUF3458) Ig-like fold
|
4
|
PF17900.3
|
1.0
|
2
|
5346.0
|
opposite-strand
|
Peptidase M1 N-terminal domain
|
5
|
PF01180.23
|
1.0
|
2
|
4163.5
|
opposite-strand
|
Dihydroorotate dehydrogenase
|
6
|
PF01131.22
|
1.0
|
2
|
66.5
|
opposite-strand
|
DNA topoisomerase
|
7
|
PF01751.24
|
1.0
|
2
|
66.5
|
opposite-strand
|
Toprim domain
|
8
|
PF08272.13
|
1.0
|
2
|
66.5
|
opposite-strand
|
Topoisomerase I zinc-ribbon-like
|
9
|
PF01396.21
|
1.0
|
2
|
66.5
|
opposite-strand
|
Topoisomerase DNA binding C4 zinc finger
|
10
|
PF07332.13
|
1.0
|
2
|
5.0
|
same-strand
|
Putative Actinobacterial Holin-X, holin superfamily III
|
11
|
PF19029.2
|
1.0
|
2
|
465.0
|
same-strand
|
DUF883 C-terminal glycine zipper region
|
12
|
PF05957.15
|
1.0
|
2
|
465.0
|
same-strand
|
DUF883 N-terminal domain
|
13
|
PF08411.12
|
1.0
|
2
|
1995.5
|
same-strand
|
Exonuclease C-terminal
|
14
|
PF00929.26
|
1.0
|
2
|
1995.5
|
same-strand
|
Exonuclease
|
++ More..