Result : Q9CGW5
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Glutaredoxin-like protein NrdH |
| NCBI Accession ID | |
| Organism | Lactococcus lactis subsp. lactis (strain IL1403) (Streptococcus lactis) |
| Left | |
| Right | |
| Strand | |
| Nucleotide Sequence | |
| Sequence | MVTVYSKNNCMQCKMVKKWLSEHEIAFDEINIDEQPEFVEKVIEMGFRAAPVITKDDFAFSGFRPSELAKLA |
| Source of smORF | Swiss-Prot |
| Function | Electron transport system for the ribonucleotide reductase system NrdEF. |
| Pubmed ID | 11337471 |
| Domain | CDD:412351 |
| Functional Category | Others |
| Uniprot ID | Q9CGW5 |
| ORF Length (Amino Acid) | 72 |
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| Conservation Analysis |
No. of Species: 81
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1003862 | 1004080 | - | NC_022369.1 | Lactococcus lactis subsp. cremoris KW2 |
| 2 | 979777 | 979995 | + | NZ_CP032627.1 | Lactococcus allomyrinae |
| 3 | 213096 | 213323 | + | NZ_CP032627.1 | Lactococcus allomyrinae |
| 4 | 1037368 | 1037586 | - | NZ_CP070872.1 | Lactococcus taiwanensis |
| 5 | 1622719 | 1622937 | + | NZ_CP065637.1 | Lactococcus garvieae |
| 6 | 1031409 | 1031627 | - | NZ_CP017194.1 | Lactococcus carnosus |
| 7 | 2088682 | 2088900 | + | NZ_CP023392.1 | Lactococcus raffinolactis |
| 8 | 1083101 | 1083319 | - | NZ_CP017195.1 | Lactococcus paracarnosus |
| 9 | 685191 | 685409 | - | NZ_AP018400.1 | Streptococcus ruminantium |
| 10 | 841922 | 842140 | - | NZ_LR134336.1 | Streptococcus oralis ATCC 35037 |
| 11 | 938093 | 938311 | + | NZ_CP032621.1 | Streptococcus gwangjuense |
| 12 | 1414796 | 1415014 | + | NZ_LR594046.1 | Streptococcus dysgalactiae |
| 13 | 1255527 | 1255745 | - | NZ_CP016953.1 | Streptococcus himalayensis |
| 14 | 1463698 | 1463922 | - | NZ_CP015196.1 | Streptococcus marmotae |
| 15 | 1888379 | 1888597 | + | NZ_CP032620.1 | Streptococcus koreensis |
| 16 | 1088826 | 1089044 | + | NC_015875.1 | Streptococcus pseudopneumoniae IS7493 |
| 17 | 890328 | 890552 | - | NZ_CP022680.1 | Streptococcus respiraculi |
| 18 | 1601612 | 1601794 | - | NZ_CP018906.1 | Lentilactobacillus curieae |
| 19 | 684019 | 684237 | - | NZ_LS483436.1 | Streptococcus intermedius |
| 20 | 1224441 | 1224659 | + | NZ_CP065061.1 | Streptococcus equi subsp. zooepidemicus |
| 21 | 1305328 | 1305546 | - | NZ_LR134293.1 | Streptococcus canis |
| 22 | 1593023 | 1593241 | + | NZ_LR594049.1 | Streptococcus gordonii |
| 23 | 1077221 | 1077439 | + | NZ_CP010450.1 | Streptococcus pyogenes |
| 24 | 1152830 | 1153048 | + | NC_012924.1 | Streptococcus suis SC84 |
| 25 | 987012 | 987188 | + | NZ_CP013237.1 | Streptococcus mutans |
| 26 | 1470235 | 1470411 | + | NZ_AP014612.1 | Streptococcus troglodytae |
| 27 | 1989674 | 1989856 | + | NZ_CP047121.1 | Lentilactobacillus hilgardii |
| 28 | 1301413 | 1301631 | + | NZ_CP034543.1 | Streptococcus periodonticum |
| 29 | 1316234 | 1316452 | + | NZ_CP012805.1 | Streptococcus anginosus |
| 30 | 2260582 | 2260761 | + | NC_020207.1 | Enterococcus faecium ATCC 8459 = NRRL B-2354 |
| 31 | 1026549 | 1026728 | + | NZ_CP032626.1 | Apilactobacillus bombintestini |
| 32 | 390313 | 390534 | - | NZ_CP044534.1 | Limosilactobacillus frumenti |
| 33 | 807515 | 807691 | - | NZ_CP031733.1 | Streptococcus chenjunshii |
| 34 | 826243 | 826419 | - | NZ_LR134512.1 | Streptococcus agalactiae |
| 35 | 2313939 | 2314118 | + | NZ_CP065211.1 | Enterococcus lactis |
| 36 | 591448 | 591666 | - | NZ_LR594050.1 | Streptococcus porcinus |
| 37 | 1355169 | 1355387 | + | NZ_LS483383.1 | Streptococcus cristatus ATCC 51100 |
| 38 | 101329 | 101505 | + | NZ_CP043405.1 | Streptococcus ratti |
| 39 | 1371129 | 1371305 | + | NZ_CP014699.1 | Streptococcus pantholopis |
| 40 | 2060578 | 2060760 | - | NZ_CP018796.1 | Lentilactobacillus parabuchneri |
| 41 | 738552 | 738731 | - | NC_020995.1 | Enterococcus casseliflavus EC20 |
| 42 | 569884 | 570060 | - | NZ_CP025536.1 | Streptococcus pluranimalium |
| 43 | 665221 | 665439 | + | NZ_LR134341.1 | Streptococcus pseudoporcinus |
| 44 | 175418 | 175594 | - | NZ_CP014835.1 | Streptococcus halotolerans |
| 45 | 371341 | 371562 | - | NZ_CP045605.1 | Limosilactobacillus reuteri |
| 46 | 770188 | 770406 | + | NZ_LT906439.1 | Streptococcus merionis |
| 47 | 367740 | 367970 | - | NZ_CP045240.1 | Limosilactobacillus vaginalis |
| 48 | 370698 | 370880 | + | NZ_CP012033.1 | Levilactobacillus koreensis |
| 49 | 496844 | 497026 | - | NC_016605.1 | Pediococcus claussenii ATCC BAA-344 |
| 50 | 193638 | 193817 | + | NZ_CP023011.2 | Enterococcus hirae |
| 51 | 390797 | 391018 | - | NZ_CP045530.1 | Limosilactobacillus pontis |
| 52 | 2352636 | 2352818 | + | NZ_CP029971.1 | Lentilactobacillus kefiri |
| 53 | 1242096 | 1242272 | + | NC_017581.1 | Streptococcus thermophilus JIM 8232 |
| 54 | 2563446 | 2563622 | + | NZ_CP018061.1 | Enterococcus mundtii |
| 55 | 2180853 | 2181035 | - | NZ_CP014912.1 | Secundilactobacillus paracollinoides |
| 56 | 1455692 | 1455874 | + | NZ_LN898144.1 | Paucilactobacillus oligofermentans DSM 15707 = LMG 22743 |
| 57 | 1181183 | 1181359 | + | NZ_LR134275.1 | Streptococcus vestibularis |
| 58 | 692927 | 693109 | - | NZ_LS483405.1 | Levilactobacillus brevis |
| 59 | 621651 | 621827 | - | NZ_CP039457.1 | Streptococcus pasteurianus |
| 60 | 3476963 | 3477142 | - | NZ_CP021874.1 | Enterococcus wangshanyuanii |
| 61 | 654806 | 654982 | - | NZ_CP029491.1 | Streptococcus sobrinus |
| 62 | 160522 | 160701 | - | NZ_CP027783.1 | Tetragenococcus osmophilus |
| 63 | 774531 | 774710 | + | NZ_CP012047.1 | Tetragenococcus halophilus |
| 64 | 1331566 | 1331748 | - | NZ_CP059603.1 | Levilactobacillus suantsaii |
| 65 | 566449 | 566625 | - | NZ_LS483343.1 | Streptococcus ferus |
| 66 | 2300224 | 2300403 | + | NZ_CP023074.1 | Enterococcus thailandicus |
| 67 | 1518001 | 1518177 | - | NZ_CP054015.1 | Streptococcus gallolyticus |
| 68 | 731609 | 731791 | - | NZ_CP032757.1 | Lactiplantibacillus pentosus |
| 69 | 1706231 | 1706413 | + | NZ_AP014680.1 | Paucilactobacillus hokkaidonensis JCM 18461 |
| 70 | 223056 | 223238 | - | NZ_CP030105.1 | Lactiplantibacillus plantarum |
| 71 | 1629075 | 1629257 | + | NZ_CP053421.1 | Pediococcus acidilactici |
| 72 | 568346 | 568522 | - | NZ_LS483403.1 | Streptococcus lutetiensis |
| 73 | 756482 | 756679 | + | NZ_CP029684.2 | Oenococcus sicerae |
| 74 | 695829 | 696005 | - | NZ_LS483306.1 | Enterococcus cecorum |
| 75 | 1022144 | 1022323 | + | NZ_CP037940.1 | Weissella cryptocerci |
| 76 | 119629 | 119826 | + | NZ_CP014324.1 | Oenococcus oeni |
| 77 | 1093982 | 1094203 | - | NZ_CP014164.1 | Aerococcus viridans |
| 78 | 2131927 | 2132106 | + | NZ_CP040586.1 | Furfurilactobacillus rossiae |
| 79 | 448373 | 448564 | - | NZ_CP045563.1 | Fructilactobacillus sanfranciscensis |
| 80 | 1116052 | 1116273 | + | NZ_CP013988.1 | Aerococcus urinaeequi |
| 81 | 201263 | 201445 | + | NZ_CP015247.1 | Leuconostoc suionicum |
| 82 | 1487815 | 1487997 | - | NZ_CP028251.1 | Leuconostoc mesenteroides |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_022369.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00268.23 | 0.96 | 78 | 2413.0 | same-strand | Ribonucleotide reductase, small chain |
| 2 | PF02867.17 | 0.98 | 79 | 100 | same-strand | Ribonucleotide reductase, barrel domain |
| 3 | PF08343.12 | 0.98 | 79 | 100 | same-strand | Ribonucleotide reductase N-terminal |
| 4 | PF00317.23 | 0.98 | 79 | 100 | same-strand | Ribonucleotide reductase, all-alpha domain |
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