Protein Information |
Information Type | Description |
---|---|
Protein name | Antitoxin RelB1 |
NCBI Accession ID | AE005673.1 |
Organism | Caulobacter vibrioides (strain ATCC 19089 / CB15) (Caulobacter crescentus) |
Left | 890968 |
Right | 891231 |
Strand | - |
Nucleotide Sequence | ATGGCCGATGGCTTCGACATTCATATCGATCAAGAGCAGGCCGCCCGGCTGAAGGTCGTTGCCGACCGCCTGGGTATGTCCGTGTCCGAGTACGCCGTTGCGCTGATCGACGCAGGGCTGACAGGCGCGGCGCCTAAAGCGATCGATCCGGACCCCGCCATCGACGAGGCCATCGCCGACGCCATCGAGCGGGGCGACGAGCCGGCGATTTCACGCGATGAGTTCCGCGCTCATATACGTCGCGTGACTGCGGGCCTGGGTTGA |
Sequence | MADGFDIHIDQEQAARLKVVADRLGMSVSEYAVALIDAGLTGAAPKAIDPDPAIDEAIADAIERGDEPAISRDEFRAHIRRVTAGLG |
Source of smORF | Swiss-Prot |
Function | Antitoxin component of a type II toxin-antitoxin (TA) system. Neutralizes the effect of cognate toxin RelE1, but no other RelE or ParE toxin. {ECO:0000269|Pubmed:20487277}. |
Pubmed ID | 11259647 15718296 20487277 |
Domain | |
Functional Category | Antitoxin_type_2 |
Uniprot ID | Q9AA08 |
ORF Length (Amino Acid) | 87 |
Conservation Analysis |
Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
---|---|---|---|---|---|
1 | 916999 | 917262 | - | NC_011916.1 | Caulobacter vibrioides NA1000 |
2 | 2336541 | 2336798 | - | NZ_CP026100.1 | Caulobacter flavus |
Neighborhood Conservation Analysis |
Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
---|---|---|---|---|---|---|
1 | PF00171.24 | 1.0 | 2 | 43.0 | same-strand | Aldehyde dehydrogenase family |
2 | PF01619.20 | 1.0 | 2 | 43.0 | same-strand | Proline dehydrogenase |
3 | PF14850.8 | 1.0 | 2 | 43.0 | same-strand | DNA-binding domain of Proline dehydrogenase |
4 | PF01037.23 | 1.0 | 2 | 3578.0 | opposite-strand | Lrp/AsnC ligand binding domain |
5 | PF13412.8 | 1.0 | 2 | 3578.0 | opposite-strand | Winged helix-turn-helix DNA-binding |
6 | PF13404.8 | 1.0 | 2 | 3578.0 | opposite-strand | AsnC-type helix-turn-helix domain |