Result : Q98QN1
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 50S ribosomal protein L21 |
| NCBI Accession ID | |
| Organism | Mycoplasma pulmonis (strain UAB CTIP) |
| Left | |
| Right | |
| Strand | |
| Nucleotide Sequence | |
| Sequence | MYAIIEVGGKQLLVKEQEVIFTEKIEGNAGEKVEFDKVLLFGDKVGRPYLEKVKVIGEIQKQSKHKKIIVYRHNAKSTHKRKLGHRQPYTRVKILEIKG |
| Source of smORF | Swiss-Prot |
| Function | This protein binds to 23S rRNA in the presence of protein L20. {ECO:0000255|HAMAP-Rule:MF_01363}. |
| Pubmed ID | 11353084 |
| Domain | CDD:412347 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | Q98QN1 |
| ORF Length (Amino Acid) | 99 |
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| Conservation Analysis |
No. of Species: 91
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 387031 | 387330 | - | NC_002771.1 | Mycoplasmopsis pulmonis UAB CTIP |
| 2 | 639398 | 639697 | - | NC_009497.1 | Mycoplasmopsis agalactiae PG2 |
| 3 | 286784 | 287083 | + | NZ_LR215037.1 | Mycoplasmopsis maculosa |
| 4 | 562645 | 562944 | - | NZ_LR215041.1 | Mycoplasmopsis columbina |
| 5 | 787003 | 787302 | + | NZ_CP040825.1 | Mycoplasma nasistruthionis |
| 6 | 705728 | 706027 | - | NZ_CP005933.1 | Mycoplasmopsis bovis CQ-W70 |
| 7 | 697061 | 697360 | - | NC_014014.1 | Mycoplasma crocodyli MP145 |
| 8 | 374176 | 374475 | + | NC_006908.1 | Mycoplasma mobile 163K |
| 9 | 59935 | 60237 | - | NZ_CP033058.2 | Mycoplasma phocicerebrale |
| 10 | 292675 | 292980 | + | NZ_LR215047.1 | Mycoplasma arthritidis |
| 11 | 339736 | 340038 | - | NZ_CP055143.1 | Mycoplasma hominis |
| 12 | 667656 | 667955 | - | NZ_LR214970.1 | Mycoplasmopsis bovigenitalium |
| 13 | 173202 | 173504 | - | NZ_AP014657.1 | Mycoplasmopsis arginini |
| 14 | 801499 | 801798 | + | NZ_CP034841.1 | Mycoplasmopsis phocirhinis |
| 15 | 635429 | 635728 | - | NZ_AP018940.1 | Mycoplasmopsis californica |
| 16 | 864272 | 864571 | + | NZ_CP030141.1 | Mycoplasmopsis anatis |
| 17 | 468316 | 468615 | - | NZ_CP041664.1 | Mycoplasma anserisalpingitidis |
| 18 | 149000 | 149305 | - | NZ_LR214938.2 | Mycoplasma salivarium |
| 19 | 321150 | 321449 | - | NZ_LR214950.1 | Mycoplasmopsis gallinacea |
| 20 | 574576 | 574878 | + | NZ_AP014631.1 | Mycoplasma canadense |
| 21 | 155849 | 156151 | + | NZ_LS991949.1 | Mycoplasma alkalescens |
| 22 | 783241 | 783543 | + | NZ_LS991949.1 | Mycoplasma alkalescens |
| 23 | 174754 | 175053 | + | NZ_LR215024.1 | Mycoplasmopsis glycophila |
| 24 | 568996 | 569298 | - | NZ_CP029295.1 | Mycoplasma phocidae |
| 25 | 357992 | 358291 | + | NZ_LR215043.1 | Mycoplasmopsis columbinasalis |
| 26 | 772102 | 772401 | + | NC_014921.1 | Mycoplasmopsis fermentans M64 |
| 27 | 23553 | 23855 | + | NZ_CP030140.1 | Mycoplasma anseris |
| 28 | 474909 | 475208 | - | NZ_LR215031.1 | Mycoplasmopsis gallopavonis |
| 29 | 197977 | 198276 | + | NZ_AP022325.1 | Mycoplasmopsis felis |
| 30 | 129000 | 129299 | - | NZ_CP007154.1 | Mycoplasma bovoculi M165/69 |
| 31 | 847352 | 847651 | + | NZ_LR215039.1 | Mycoplasmopsis columboralis |
| 32 | 519962 | 520264 | + | NZ_CP030103.1 | Mycoplasma cloacale |
| 33 | 455574 | 455873 | - | NZ_LR215036.1 | Mycoplasmopsis citelli |
| 34 | 618217 | 618522 | - | NZ_CP034044.1 | Mycoplasma struthionis |
| 35 | 126014 | 126325 | - | NZ_LR214972.1 | Mycoplasmopsis bovirhinis |
| 36 | 554803 | 555105 | - | NZ_LR215042.1 | Mycoplasmopsis meleagridis |
| 37 | 679435 | 679740 | + | NZ_CP008748.1 | Mycoplasma hyosynoviae |
| 38 | 407414 | 407713 | - | NZ_LR214951.1 | Mycoplasma neurolyticum |
| 39 | 62455 | 62766 | - | NZ_CP011368.1 | Mycoplasmopsis canis |
| 40 | 512595 | 512906 | - | NZ_LS991951.1 | Mycoplasmopsis edwardii |
| 41 | 653386 | 653688 | - | NZ_CP029258.1 | Mycoplasmopsis synoviae |
| 42 | 438671 | 438982 | - | NZ_LR214986.1 | Mycoplasmopsis cynos |
| 43 | 230553 | 230852 | + | NZ_CP024161.1 | Mycoplasma dispar |
| 44 | 518310 | 518609 | + | NZ_CP007585.1 | Mycoplasma flocculare ATCC 27399 |
| 45 | 191191 | 191490 | - | NC_021283.1 | Mycoplasma hyopneumoniae 168-L |
| 46 | 1514993 | 1515301 | - | NZ_CP035485.1 | Salicibibacter halophilus |
| 47 | 3808770 | 3809078 | + | NZ_CP068053.1 | Peribacillus psychrosaccharolyticus |
| 48 | 864362 | 864661 | + | NC_018631.1 | Leuconostoc gelidum JB7 |
| 49 | 867385 | 867696 | + | NZ_AP024085.1 | Faecalibacillus intestinalis |
| 50 | 2636952 | 2637260 | - | NZ_CP023704.1 | Caldibacillus thermoamylovorans |
| 51 | 1266516 | 1266815 | - | NZ_CP015247.1 | Leuconostoc suionicum |
| 52 | 427958 | 428257 | + | NZ_CP028251.1 | Leuconostoc mesenteroides |
| 53 | 1122105 | 1122413 | - | NZ_CP014872.1 | Fructilactobacillus lindneri |
| 54 | 1369977 | 1370285 | - | NZ_CP031092.1 | Salicibibacter kimchii |
| 55 | 1852400 | 1852699 | + | NC_014136.1 | Leuconostoc kimchii IMSNU 11154 |
| 56 | 299206 | 299505 | - | NZ_CP042374.1 | Leuconostoc carnosum |
| 57 | 713801 | 714145 | + | NZ_CP068170.1 | Erysipelatoclostridium ramosum |
| 58 | 661173 | 661481 | + | NZ_CP014342.1 | Geobacillus subterraneus |
| 59 | 582180 | 582479 | + | NZ_CP042410.1 | Leuconostoc citreum |
| 60 | 5358969 | 5359280 | - | NZ_CP026520.1 | Paenibacillus chitinolyticus |
| 61 | 2141822 | 2142130 | - | NZ_CP041666.1 | Radiobacillus deserti |
| 62 | 1075016 | 1075324 | + | NC_018704.1 | Amphibacillus xylanus NBRC 15112 |
| 63 | 3128847 | 3129155 | - | NC_002570.2 | Alkalihalobacillus halodurans C-125 |
| 64 | 2624030 | 2624338 | - | NC_006510.1 | Geobacillus kaustophilus HTA426 |
| 65 | 1827412 | 1827720 | - | NZ_CP061470.1 | Geobacillus zalihae |
| 66 | 1297501 | 1297809 | + | NZ_CP018058.1 | Geobacillus thermocatenulatus |
| 67 | 3309580 | 3309888 | + | NZ_CP061472.1 | Geobacillus thermoleovorans |
| 68 | 3645831 | 3646139 | - | NZ_CP053989.1 | Niallia circulans |
| 69 | 913491 | 913799 | - | NZ_CP030926.1 | Peribacillus butanolivorans |
| 70 | 4255680 | 4255988 | + | NZ_CP017704.1 | Peribacillus simplex NBRC 15720 = DSM 1321 |
| 71 | 1499997 | 1500308 | - | NC_011899.1 | Halothermothrix orenii H 168 |
| 72 | 1323290 | 1323598 | + | NZ_CP070511.1 | Parageobacillus toebii |
| 73 | 4415395 | 4415703 | - | NZ_CP024035.1 | Priestia aryabhattai |
| 74 | 2720913 | 2721224 | - | NZ_CP059066.1 | Koleobacter methoxysyntrophicus |
| 75 | 834077 | 834388 | + | NC_015437.1 | Selenomonas sputigena ATCC 35185 |
| 76 | 3517456 | 3517764 | - | NZ_CP042593.1 | Bacillus dafuensis |
| 77 | 430159 | 430467 | - | NZ_CP015108.1 | Sporosarcina ureae |
| 78 | 2812773 | 2813081 | - | NC_013791.2 | Alkalihalobacillus pseudofirmus OF4 |
| 79 | 3257177 | 3257485 | + | NZ_CP041305.1 | Cytobacillus ciccensis |
| 80 | 2252106 | 2252414 | - | NZ_CP064060.1 | Anoxybacillus caldiproteolyticus |
| 81 | 554263 | 554574 | + | NZ_AP019711.1 | Amedibacterium intestinale |
| 82 | 637529 | 637837 | + | NZ_CP045563.1 | Fructilactobacillus sanfranciscensis |
| 83 | 590057 | 590365 | + | NZ_CP045562.1 | Fructilactobacillus fructivorans |
| 84 | 786979 | 787290 | + | NZ_CP068564.1 | Keratinibaculum paraultunense |
| 85 | 647588 | 647896 | + | NZ_LR134523.1 | Peptoniphilus ivorii |
| 86 | 322714 | 323025 | + | NZ_CP048436.1 | Flavonifractor plautii |
| 87 | 1395977 | 1396288 | + | NC_016627.1 | Acetivibrio clariflavus DSM 19732 |
| 88 | 604628 | 604930 | - | NZ_CP007520.1 | Mycoplasma yeatsii GM274B |
| 89 | 788283 | 788597 | - | NZ_LT635475.1 | Ezakiella massiliensis |
| 90 | 467773 | 468084 | + | NZ_CP009761.1 | Parvimonas micra |
| 91 | 986219 | 986530 | + | NZ_CP034118.1 | Staphylospora marina |
| 92 | 1852750 | 1853064 | - | NZ_CP039710.1 | Thermoactinomyces vulgaris |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_002771.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01016.21 | 1.0 | 91 | 28.0 | same-strand | Ribosomal L27 protein |
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