Result : A9KJJ2
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 50S ribosomal protein L23 |
| NCBI Accession ID | CP000885.1 |
| Organism | Lachnoclostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) (Clostridium phytofermentans) |
| Left | 4504321 |
| Right | 4504620 |
| Strand | - |
| Nucleotide Sequence | ATGGCTAATTTAAAATATTATGATGTTATACTCAAGCCAATCGTAACTGAGAAGAGTATGAATTCTATGAGCGAAAAGAAGTATTCCTTCTCCGTTCATCCAGAAGCTACTAAGACTCAGGTTAAAGAGGCTGTAGAGAAGATGTTTGCCGGCACTAAGGTAGCAAGCGTAAACACAATGAATTTAGAAGGTAAGAACCGCAGACGTGGAAACACATCTGGTAAAACTTCTAAAACTAAGAAAGCAATTGTTCAGTTAACAGCTGACAGTGCTGAAATCGAAATCTTCACAGGTCTGTAA |
| Sequence | MANLKYYDVILKPIVTEKSMNSMSEKKYSFSVHPEATKTQVKEAVEKMFAGTKVASVNTMNLEGKNRRRGNTSGKTSKTKKAIVQLTADSAEIEIFTGL |
| Source of smORF | Swiss-Prot |
| Function | One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome. {ECO:0000255|HAMAP-Rule:MF_01369}. |
| Pubmed ID | |
| Domain | CDD:412311 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | A9KJJ2 |
| ORF Length (Amino Acid) | 99 |
++ More..
| Conservation Analysis |
No. of Species: 407
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 4504321 | 4504620 | - | NC_010001.1 | Lachnoclostridium phytofermentans ISDg |
| 2 | 1614148 | 1614447 | + | NZ_CP048000.1 | Anaerocolumna sedimenticola |
| 3 | 405309 | 405608 | + | NZ_AP023367.1 | Anaerocolumna cellulosilytica |
| 4 | 333674 | 333973 | + | NZ_LN879430.1 | Herbinix luporum |
| 5 | 365393 | 365692 | + | NZ_CP036345.1 | Anaerostipes caccae L1-92 |
| 6 | 3247085 | 3247384 | - | NZ_CP040058.1 | Anaerostipes rhamnosivorans |
| 7 | 3880098 | 3880397 | - | NZ_LR027880.1 | Roseburia intestinalis L1-82 |
| 8 | 3140687 | 3140986 | - | NZ_LR699011.1 | Roseburia hominis |
| 9 | 1617208 | 1617507 | - | NZ_CP027002.1 | [Ruminococcus] gnavus ATCC 29149 |
| 10 | 336414 | 336713 | + | NC_012778.1 | [Eubacterium] eligens ATCC 27750 |
| 11 | 4063437 | 4063736 | - | NC_014376.1 | [Clostridium] saccharolyticum WM1 |
| 12 | 502306 | 502605 | + | NZ_CP030280.1 | Blautia argi |
| 13 | 2518284 | 2518583 | - | NZ_CP022413.2 | Blautia hansenii DSM 20583 |
| 14 | 1980171 | 1980476 | + | NZ_LT990039.1 | Massilistercora timonensis |
| 15 | 5092747 | 5093046 | - | NZ_CP039126.1 | Blautia producta |
| 16 | 5616534 | 5616833 | - | NZ_CP022464.2 | Enterocloster bolteae |
| 17 | 754411 | 754710 | + | NC_014387.1 | Butyrivibrio proteoclasticus B316 |
| 18 | 762708 | 763007 | + | NZ_CP032364.1 | Lachnoanaerobaculum umeaense |
| 19 | 2568282 | 2568587 | + | NZ_CP070062.1 | Coprococcus comes |
| 20 | 506906 | 507211 | - | NZ_CP036170.1 | [Clostridium] scindens ATCC 35704 |
| 21 | 3426417 | 3426722 | + | NZ_LT635479.1 | Lachnoclostridium phocaeense |
| 22 | 573759 | 574058 | + | NZ_CP014223.1 | Anaerotignum propionicum DSM 1682 |
| 23 | 2734120 | 2734419 | + | NZ_LR130778.1 | Petrocella atlantisensis |
| 24 | 3859542 | 3859841 | - | NC_015275.1 | Cellulosilyticum lentocellum DSM 5427 |
| 25 | 1314904 | 1315194 | - | NZ_CP027228.1 | Mogibacterium diversum |
| 26 | 3953468 | 3953758 | - | NZ_CP019870.1 | Clostridioides difficile |
| 27 | 158118 | 158408 | + | NC_014829.1 | Evansella cellulosilytica DSM 2522 |
| 28 | 2373350 | 2373640 | - | NC_018664.1 | Gottschalkia acidurici 9a |
| 29 | 1469768 | 1470022 | - | NZ_CP029477.1 | Lactobacillus kullabergensis |
| 30 | 1628259 | 1628549 | + | NZ_CP063356.1 | Anaerobacillus isosaccharinicus |
| 31 | 334684 | 334932 | + | NC_008530.1 | Lactobacillus gasseri ATCC 33323 = JCM 1131 |
| 32 | 337631 | 337879 | + | NZ_AP018549.1 | Lactobacillus paragasseri |
| 33 | 1380496 | 1380750 | - | NZ_CP029544.1 | Lactobacillus helsingborgensis |
| 34 | 1952522 | 1952803 | - | NZ_CP017194.1 | Lactococcus carnosus |
| 35 | 860098 | 860379 | - | NZ_CP023392.1 | Lactococcus raffinolactis |
| 36 | 223296 | 223577 | + | NZ_CP017195.1 | Lactococcus paracarnosus |
| 37 | 339389 | 339637 | + | NZ_CP059276.1 | Lactobacillus taiwanensis |
| 38 | 143441 | 143731 | + | NZ_CP007452.1 | Peptoclostridium acidaminophilum DSM 3953 |
| 39 | 82879 | 83169 | + | NZ_CP014150.1 | Paeniclostridium sordellii |
| 40 | 1280690 | 1280938 | - | NZ_CP029476.1 | Lactobacillus apis |
| 41 | 292285 | 292530 | + | NC_021181.2 | Lactobacillus acidophilus La-14 |
| 42 | 70796 | 71044 | + | NZ_CP065061.1 | Streptococcus equi subsp. zooepidemicus |
| 43 | 1566727 | 1567014 | - | NZ_CP053421.1 | Pediococcus acidilactici |
| 44 | 3720396 | 3720683 | + | NZ_CP017269.1 | Geosporobacter ferrireducens |
| 45 | 395276 | 395524 | + | NZ_CP059829.1 | Lactobacillus ultunensis |
| 46 | 1172413 | 1172661 | - | NZ_LR134341.1 | Streptococcus pseudoporcinus |
| 47 | 148345 | 148629 | + | NZ_CP023704.1 | Caldibacillus thermoamylovorans |
| 48 | 403452 | 403748 | + | NZ_CP018809.1 | Lactobacillus jensenii |
| 49 | 451342 | 451629 | + | NZ_CP017996.1 | Companilactobacillus crustorum |
| 50 | 445514 | 445801 | + | NZ_CP012559.1 | Companilactobacillus heilongjiangensis |
| 51 | 2292914 | 2293159 | - | NC_015958.1 | Thermoanaerobacter wiegelii Rt8.B1 |
| 52 | 1391238 | 1391525 | - | NC_008525.1 | Pediococcus pentosaceus ATCC 25745 |
| 53 | 560947 | 561237 | + | NC_009922.1 | Alkaliphilus oremlandii OhILAs |
| 54 | 416031 | 416276 | + | NC_014964.1 | Thermoanaerobacter brockii subsp. finnii Ako-1 |
| 55 | 2023907 | 2024194 | - | NZ_CP040736.1 | Companilactobacillus futsaii |
| 56 | 2098321 | 2098608 | - | NZ_CP017702.1 | Companilactobacillus farciminis KCTC 3681 = DSM 20184 |
| 57 | 1750075 | 1750326 | + | NZ_CP013237.1 | Streptococcus mutans |
| 58 | 1915469 | 1915720 | - | NZ_AP014612.1 | Streptococcus troglodytae |
| 59 | 56614 | 56862 | + | NZ_LR594050.1 | Streptococcus porcinus |
| 60 | 669559 | 669807 | + | NZ_CP043405.1 | Streptococcus ratti |
| 61 | 1549273 | 1549521 | - | NZ_CP015444.1 | Lactobacillus helveticus |
| 62 | 2395730 | 2396017 | - | NZ_CP059603.1 | Levilactobacillus suantsaii |
| 63 | 1940357 | 1940647 | - | NZ_CP068564.1 | Keratinibaculum paraultunense |
| 64 | 220376 | 220660 | + | NZ_CP045007.1 | Latilactobacillus graminis |
| 65 | 1353251 | 1353535 | - | NZ_CP026116.1 | Latilactobacillus curvatus JCM 1096 = DSM 20019 |
| 66 | 428880 | 429164 | - | NZ_CP018888.1 | Amylolactobacillus amylophilus DSM 20533 = JCM 1125 |
| 67 | 606720 | 607004 | - | NZ_CP046037.1 | Latilactobacillus sakei |
| 68 | 272980 | 273267 | + | NZ_CP033052.1 | Bacillus vallismortis |
| 69 | 136933 | 137220 | + | NZ_CP048852.1 | Bacillus tequilensis |
| 70 | 136693 | 136980 | + | NZ_CP051464.1 | Bacillus mojavensis |
| 71 | 136819 | 137106 | + | NZ_CP034943.1 | Bacillus subtilis subsp. spizizenii ATCC 6633 = JCM 2499 |
| 72 | 106713 | 107000 | + | NZ_CP013984.1 | Bacillus inaquosorum |
| 73 | 1872422 | 1872709 | - | NZ_CP029364.1 | Bacillus halotolerans |
| 74 | 2213927 | 2214214 | + | NZ_CP012033.1 | Levilactobacillus koreensis |
| 75 | 1513139 | 1513384 | - | NZ_CP045240.1 | Limosilactobacillus vaginalis |
| 76 | 3793302 | 3793589 | - | NZ_CP011937.1 | Bacillus velezensis |
| 77 | 137952 | 138239 | + | NZ_CP053376.1 | Bacillus amyloliquefaciens |
| 78 | 136992 | 137279 | + | NC_000964.3 | Bacillus subtilis subsp. subtilis str. 168 |
| 79 | 271418 | 271663 | + | NZ_CP031835.1 | Lactobacillus amylolyticus |
| 80 | 482113 | 482400 | - | NZ_CP016622.1 | Parageobacillus thermoglucosidasius |
| 81 | 1962648 | 1962893 | - | NZ_CP009170.1 | Thermoanaerobacter kivui |
| 82 | 355497 | 355745 | + | NZ_CP061341.1 | Lactobacillus kefiranofaciens |
| 83 | 3935622 | 3935864 | - | NZ_CP013019.1 | Clostridium pasteurianum |
| 84 | 391441 | 391704 | + | NZ_CP044496.1 | Lactobacillus acetotolerans |
| 85 | 425552 | 425839 | + | NZ_CP032626.1 | Apilactobacillus bombintestini |
| 86 | 65988 | 66236 | + | NZ_CP010450.1 | Streptococcus pyogenes |
| 87 | 507173 | 507421 | - | NZ_LR134293.1 | Streptococcus canis |
| 88 | 71490 | 71738 | + | NZ_LR594046.1 | Streptococcus dysgalactiae |
| 89 | 1714499 | 1714786 | - | NZ_CP049366.1 | Companilactobacillus pabuli |
| 90 | 3443591 | 3443881 | - | NZ_CP012502.1 | Bacillus beveridgei |
| 91 | 143568 | 143855 | + | NZ_LT603683.1 | Bacillus glycinifermentans |
| 92 | 92746 | 92994 | + | NZ_CP029491.1 | Streptococcus sobrinus |
| 93 | 170776 | 171063 | - | NZ_CP022437.1 | Virgibacillus necropolis |
| 94 | 1825868 | 1826110 | - | NZ_CP035130.1 | Gudongella oleilytica |
| 95 | 1263527 | 1263793 | - | NC_016605.1 | Pediococcus claussenii ATCC BAA-344 |
| 96 | 110274 | 110561 | + | NZ_CP011150.1 | Bacillus altitudinis |
| 97 | 1408343 | 1408630 | - | NZ_CP043404.1 | Bacillus safensis |
| 98 | 1491277 | 1491564 | - | NZ_CP017786.1 | Bacillus xiamenensis |
| 99 | 1061995 | 1062282 | - | NZ_CP022315.1 | Virgibacillus phasianinus |
| 100 | 149482 | 149769 | - | NZ_CP019323.1 | Companilactobacillus allii |
| 101 | 757741 | 758037 | - | NZ_CP053988.1 | Abiotrophia defectiva |
| 102 | 398995 | 399282 | + | NZ_CP045562.1 | Fructilactobacillus fructivorans |
| 103 | 2438960 | 2439244 | - | NZ_CP017704.1 | Peribacillus simplex NBRC 15720 = DSM 1321 |
| 104 | 35587 | 35877 | - | NZ_CP036523.1 | Peptacetobacter hiranonis |
| 105 | 1401660 | 1401908 | - | NZ_CP044534.1 | Limosilactobacillus frumenti |
| 106 | 129309 | 129596 | + | NC_006510.1 | Geobacillus kaustophilus HTA426 |
| 107 | 2822961 | 2823248 | + | NZ_CP061470.1 | Geobacillus zalihae |
| 108 | 143739 | 144026 | - | NZ_CP018058.1 | Geobacillus thermocatenulatus |
| 109 | 2266765 | 2267052 | - | NZ_CP061472.1 | Geobacillus thermoleovorans |
| 110 | 1566911 | 1567159 | - | NZ_CP045605.1 | Limosilactobacillus reuteri |
| 111 | 148860 | 149147 | + | NZ_CP017962.1 | Virgibacillus halodenitrificans |
| 112 | 2574726 | 2575010 | + | NZ_CP030926.1 | Peribacillus butanolivorans |
| 113 | 1320317 | 1320565 | - | NZ_CP045530.1 | Limosilactobacillus pontis |
| 114 | 2307368 | 2307652 | - | NC_014614.1 | Acetoanaerobium sticklandii |
| 115 | 132232 | 132516 | + | NZ_CP065425.1 | Heyndrickxia vini |
| 116 | 4991297 | 4991587 | - | NZ_CP040336.1 | Bacillus luti |
| 117 | 122586 | 122876 | + | NC_007530.2 | Bacillus anthracis str. 'Ames Ancestor' |
| 118 | 128029 | 128319 | + | NZ_CP064875.1 | Bacillus toyonensis |
| 119 | 128231 | 128521 | + | NC_011725.1 | Bacillus cereus B4264 |
| 120 | 127950 | 128240 | + | NZ_CP032365.1 | Bacillus wiedmannii |
| 121 | 1984857 | 1985120 | + | NZ_CP027114.1 | Gordonia alkanivorans |
| 122 | 135103 | 135390 | + | NC_006270.3 | Bacillus licheniformis DSM 13 = ATCC 14580 |
| 123 | 167583 | 167870 | + | NZ_CP023665.1 | Bacillus paralicheniformis |
| 124 | 10122 | 10385 | - | NZ_CP059694.1 | Gordonia rubripertincta |
| 125 | 128893 | 129183 | + | NZ_CP024109.1 | Bacillus cytotoxicus |
| 126 | 633703 | 633990 | + | NZ_CP009761.1 | Parvimonas micra |
| 127 | 3269677 | 3269919 | - | NC_015687.1 | Clostridium acetobutylicum DSM 1731 |
| 128 | 1194976 | 1195263 | + | NZ_CP017703.1 | Aeribacillus pallidus |
| 129 | 106649 | 106900 | + | NZ_LS483343.1 | Streptococcus ferus |
| 130 | 123061 | 123333 | + | NZ_CP015378.1 | Fictibacillus phosphorivorans |
| 131 | 192357 | 192599 | + | NZ_CP043998.1 | Clostridium diolis |
| 132 | 1842196 | 1842444 | - | NC_017581.1 | Streptococcus thermophilus JIM 8232 |
| 133 | 1860373 | 1860621 | - | NZ_LR134275.1 | Streptococcus vestibularis |
| 134 | 138931 | 139191 | + | NC_014168.1 | Segniliparus rotundus DSM 44985 |
| 135 | 2265447 | 2265740 | - | NZ_LT906477.1 | Clostridium cochlearium |
| 136 | 131673 | 131960 | + | NZ_CP024848.1 | Oceanobacillus zhaokaii |
| 137 | 77736 | 77984 | + | NZ_LR134512.1 | Streptococcus agalactiae |
| 138 | 82641 | 82889 | + | NZ_CP031733.1 | Streptococcus chenjunshii |
| 139 | 352028 | 352270 | + | NZ_AP019750.1 | Lactobacillus delbrueckii subsp. delbrueckii |
| 140 | 252874 | 253161 | + | NZ_CP016786.1 | Clostridium isatidis |
| 141 | 221369 | 221650 | + | NC_010718.1 | Natranaerobius thermophilus JW/NM-WN-LF |
| 142 | 234814 | 235056 | + | NZ_CP017253.2 | Clostridium taeniosporum |
| 143 | 55507 | 55794 | - | NZ_CP020772.1 | Halobacillus mangrovi |
| 144 | 4118562 | 4118867 | - | NZ_CP022208.1 | Rhodococcus pyridinivorans |
| 145 | 269083 | 269379 | + | NZ_CP034726.1 | Acetilactobacillus jinshanensis |
| 146 | 451309 | 451557 | - | NZ_CP032620.1 | Streptococcus koreensis |
| 147 | 1487083 | 1487331 | - | NZ_CP014835.1 | Streptococcus halotolerans |
| 148 | 527604 | 527861 | + | NZ_LN898144.1 | Paucilactobacillus oligofermentans DSM 15707 = LMG 22743 |
| 149 | 1755135 | 1755419 | - | NZ_CP041305.1 | Cytobacillus ciccensis |
| 150 | 808558 | 808800 | - | NZ_LT635475.1 | Ezakiella massiliensis |
| 151 | 2445890 | 2446135 | - | NZ_AP012544.1 | Lacticaseibacillus casei DSM 20011 = JCM 1134 = ATCC 393 |
| 152 | 2445829 | 2446074 | - | NZ_LS991421.1 | Lacticaseibacillus zeae |
| 153 | 3780466 | 3780771 | - | NZ_LT906450.1 | Rhodococcus rhodochrous |
| 154 | 142995 | 143282 | + | NC_004193.1 | Oceanobacillus iheyensis HTE831 |
| 155 | 624999 | 625283 | + | NZ_CP044499.1 | Lapidilactobacillus dextrinicus |
| 156 | 1942417 | 1942662 | - | NC_014209.1 | Thermoanaerobacter mathranii subsp. mathranii str. A3 |
| 157 | 2013261 | 2013506 | - | NC_013921.1 | Thermoanaerobacter italicus Ab9 |
| 158 | 711332 | 711622 | + | NZ_CP048649.1 | Aminipila butyrica |
| 159 | 138844 | 139128 | + | NZ_CP042593.1 | Bacillus dafuensis |
| 160 | 1283016 | 1283303 | - | NZ_CP037940.1 | Weissella cryptocerci |
| 161 | 220426 | 220668 | + | NC_022571.1 | Clostridium saccharobutylicum DSM 13864 |
| 162 | 142703 | 142987 | + | NC_022524.1 | Bacillus infantis NRRL B-14911 |
| 163 | 2426452 | 2426745 | - | NZ_LR590481.1 | Hathewaya histolytica |
| 164 | 4046534 | 4046821 | - | NZ_CP016020.1 | Bacillus weihaiensis |
| 165 | 790063 | 790350 | + | NZ_CP014872.1 | Fructilactobacillus lindneri |
| 166 | 1782333 | 1782581 | - | NZ_CP012805.1 | Streptococcus anginosus |
| 167 | 1762919 | 1763167 | - | NZ_LS483436.1 | Streptococcus intermedius |
| 168 | 348791 | 349078 | - | NZ_CP070511.1 | Parageobacillus toebii |
| 169 | 121222 | 121509 | + | NZ_CP012152.1 | Anoxybacillus gonensis |
| 170 | 562456 | 562743 | + | NZ_AP014680.1 | Paucilactobacillus hokkaidonensis JCM 18461 |
| 171 | 3099158 | 3099445 | - | NZ_CP014342.1 | Geobacillus subterraneus |
| 172 | 198106 | 198393 | - | NZ_CP029971.1 | Lentilactobacillus kefiri |
| 173 | 2404754 | 2404999 | - | NC_014334.2 | Lacticaseibacillus paracasei |
| 174 | 72789 | 73037 | + | NZ_CP039457.1 | Streptococcus pasteurianus |
| 175 | 871382 | 871630 | + | NZ_CP054015.1 | Streptococcus gallolyticus |
| 176 | 195318 | 195560 | + | NC_020291.1 | Clostridium saccharoperbutylacetonicum N1-4(HMT) |
| 177 | 1425170 | 1425454 | - | NZ_CP011403.1 | Ligilactobacillus salivarius str. Ren |
| 178 | 1717823 | 1718071 | - | NZ_CP034543.1 | Streptococcus periodonticum |
| 179 | 3350324 | 3350566 | - | NZ_CP040924.1 | Clostridium thermarum |
| 180 | 1944901 | 1945185 | - | NZ_CP022983.1 | Cytobacillus kochii |
| 181 | 3495656 | 3495919 | + | NZ_CP016793.1 | Lentzea guizhouensis |
| 182 | 63703 | 63951 | + | NZ_LS483403.1 | Streptococcus lutetiensis |
| 183 | 251563 | 251847 | + | NZ_CP053989.1 | Niallia circulans |
| 184 | 2174185 | 2174427 | - | NC_003869.1 | Caldanaerobacter subterraneus subsp. tengcongensis MB4 |
| 185 | 139997 | 140281 | + | NZ_CP012024.1 | Bacillus smithii |
| 186 | 2541988 | 2542275 | - | NZ_CP013862.1 | Lentibacillus amyloliquefaciens |
| 187 | 1101164 | 1101451 | - | NZ_CP045563.1 | Fructilactobacillus sanfranciscensis |
| 188 | 913622 | 913876 | + | NZ_CP040586.1 | Furfurilactobacillus rossiae |
| 189 | 493284 | 493535 | - | NZ_CP016953.1 | Streptococcus himalayensis |
| 190 | 2265842 | 2266129 | - | NZ_CP047121.1 | Lentilactobacillus hilgardii |
| 191 | 399195 | 399485 | - | NZ_CP049886.1 | Vagococcus coleopterorum |
| 192 | 1789175 | 1789462 | + | NZ_CP018796.1 | Lentilactobacillus parabuchneri |
| 193 | 490501 | 490752 | + | NZ_CP022680.1 | Streptococcus respiraculi |
| 194 | 844380 | 844631 | + | NZ_CP015196.1 | Streptococcus marmotae |
| 195 | 354690 | 354935 | + | NC_015555.1 | Thermoanaerobacterium xylanolyticum LX-11 |
| 196 | 2256120 | 2256365 | - | NZ_CP047602.1 | Thermoanaerobacterium aotearoense |
| 197 | 293904 | 294155 | + | NZ_CP026923.1 | Pontimonas salivibrio |
| 198 | 430875 | 431120 | + | NC_014410.1 | Thermoanaerobacterium thermosaccharolyticum DSM 571 |
| 199 | 163413 | 163697 | + | NZ_CP016543.2 | Planococcus donghaensis |
| 200 | 143279 | 143563 | + | NZ_CP016537.2 | Planococcus halocryophilus |
| 201 | 147934 | 148218 | + | NZ_CP016534.2 | Planococcus antarcticus DSM 14505 |
| 202 | 129617 | 129901 | + | NZ_LS483476.1 | Lederbergia lentus |
| 203 | 2341160 | 2341414 | + | NZ_CP009709.1 | Weizmannia coagulans DSM 1 = ATCC 7050 |
| 204 | 11106390 | 11106689 | - | NZ_CP012752.1 | Kibdelosporangium phytohabitans |
| 205 | 108156 | 108404 | + | NZ_CP025536.1 | Streptococcus pluranimalium |
| 206 | 200953 | 201237 | + | NZ_CP010820.1 | Lysinibacillus fusiformis |
| 207 | 4040896 | 4041201 | + | NZ_LS483468.1 | Rhodococcus coprophilus |
| 208 | 2011391 | 2011633 | + | NZ_CP023671.1 | Clostridium septicum |
| 209 | 254315 | 254560 | + | NC_020995.1 | Enterococcus casseliflavus EC20 |
| 210 | 515965 | 516279 | + | NC_015564.1 | Hoyosella subflava DQS3-9A1 |
| 211 | 7589301 | 7589564 | - | NZ_CP023445.1 | Actinosynnema pretiosum |
| 212 | 7745645 | 7745908 | - | NC_013093.1 | Actinosynnema mirum DSM 43827 |
| 213 | 182026 | 182316 | + | NZ_CP029797.1 | Paraliobacillus zengyii |
| 214 | 1007892 | 1008179 | - | NZ_CP012034.1 | Companilactobacillus ginsenosidimutans |
| 215 | 1619169 | 1619453 | - | NZ_CP013661.2 | Planococcus kocurii |
| 216 | 143424 | 143708 | + | NZ_CP019401.1 | Planococcus faecalis |
| 217 | 1373243 | 1373530 | - | NZ_CP018622.1 | Virgibacillus dokdonensis |
| 218 | 122773 | 123060 | + | NZ_CP031513.1 | Bombilactobacillus bombi |
| 219 | 70497 | 70784 | + | NZ_CP039712.1 | Vagococcus zengguangii |
| 220 | 154965 | 155222 | + | NC_014098.1 | Kyrpidia tusciae DSM 2912 |
| 221 | 3573325 | 3573630 | - | NZ_CP029146.1 | Rhodococcus ruber |
| 222 | 2062357 | 2062602 | - | NZ_CP021874.1 | Enterococcus wangshanyuanii |
| 223 | 75014 | 75313 | + | NZ_AP018400.1 | Streptococcus ruminantium |
| 224 | 285280 | 285567 | - | NZ_CP012294.1 | Pediococcus damnosus |
| 225 | 140282 | 140566 | + | NZ_CP016539.2 | Planococcus plakortidis |
| 226 | 8754183 | 8754482 | - | NC_019673.1 | Saccharothrix espanaensis DSM 44229 |
| 227 | 4059948 | 4060208 | - | NZ_CP019066.1 | Tsukamurella tyrosinosolvens |
| 228 | 4499678 | 4499962 | - | NZ_CP006837.1 | Lysinibacillus varians |
| 229 | 1754660 | 1754956 | - | NZ_LR134336.1 | Streptococcus oralis ATCC 35037 |
| 230 | 1968022 | 1968318 | + | NZ_CP032621.1 | Streptococcus gwangjuense |
| 231 | 2036976 | 2037272 | - | NZ_LR594049.1 | Streptococcus gordonii |
| 232 | 292482 | 292778 | + | NC_015875.1 | Streptococcus pseudopneumoniae IS7493 |
| 233 | 2697628 | 2697912 | - | NZ_CP068053.1 | Peribacillus psychrosaccharolyticus |
| 234 | 5618045 | 5618350 | - | NZ_CP022088.2 | Nocardia brasiliensis |
| 235 | 140910 | 141194 | + | NZ_CP016538.2 | Planococcus maritimus |
| 236 | 140751 | 141035 | + | NZ_CP059540.1 | Planococcus maritimus |
| 237 | 3329069 | 3329353 | + | NZ_CP013659.2 | Planococcus rifietoensis |
| 238 | 86982 | 87281 | + | NZ_LS483383.1 | Streptococcus cristatus ATCC 51100 |
| 239 | 1403403 | 1403693 | + | NZ_CP059066.1 | Koleobacter methoxysyntrophicus |
| 240 | 244767 | 245051 | + | NZ_CP019980.1 | Lysinibacillus sphaericus |
| 241 | 1835702 | 1835950 | - | NZ_LT906439.1 | Streptococcus merionis |
| 242 | 2167442 | 2167738 | + | NZ_CP014699.1 | Streptococcus pantholopis |
| 243 | 10404795 | 10405094 | - | NZ_CP034550.1 | Saccharothrix syringae |
| 244 | 1568027 | 1568314 | - | NZ_CP047141.1 | Ligilactobacillus animalis |
| 245 | 147933 | 148217 | + | NZ_CP009416.1 | Jeotgalibacillus malaysiensis |
| 246 | 819716 | 820021 | + | NZ_CP018082.1 | Nocardia mangyaensis |
| 247 | 1176108 | 1176353 | - | NZ_CP034413.2 | Dysosmobacter welbionis |
| 248 | 1365769 | 1366056 | + | NZ_CP018906.1 | Lentilactobacillus curieae |
| 249 | 5784514 | 5784774 | - | NC_015312.1 | Pseudonocardia dioxanivorans CB1190 |
| 250 | 145411 | 145698 | + | NC_017668.1 | Halobacillus halophilus DSM 2266 |
| 251 | 237226 | 237516 | + | NC_008593.1 | Clostridium novyi NT |
| 252 | 2599406 | 2599690 | - | NC_013891.1 | Listeria seeligeri serovar 1/2b str. SLCC3954 |
| 253 | 2704149 | 2704433 | - | NC_003210.1 | Listeria monocytogenes EGD-e |
| 254 | 4500450 | 4500743 | - | NC_014393.1 | Clostridium cellulovorans 743B |
| 255 | 148375 | 148632 | + | NZ_CP024955.1 | Kyrpidia spormannii |
| 256 | 51070 | 51357 | - | NZ_CP039710.1 | Thermoactinomyces vulgaris |
| 257 | 2096916 | 2097203 | + | NZ_CP014912.1 | Secundilactobacillus paracollinoides |
| 258 | 3983787 | 3984062 | - | NZ_CP027793.1 | Rhodococcus hoagii |
| 259 | 2609723 | 2610007 | - | NZ_LT906444.1 | Listeria welshimeri |
| 260 | 2725290 | 2725574 | - | NZ_CP009577.1 | Listeria ivanovii subsp. ivanovii |
| 261 | 246730 | 246972 | + | NZ_CP027286.1 | Clostridium chauvoei |
| 262 | 1456203 | 1456460 | - | NZ_CP041146.1 | Nocardioides humi |
| 263 | 59478 | 59765 | - | NZ_CP015438.1 | Anoxybacillus amylolyticus |
| 264 | 342749 | 343036 | - | NZ_CP042371.1 | Secundilactobacillus malefermentans |
| 265 | 756764 | 757051 | - | NZ_CP034465.1 | Jeotgalibaca ciconiae |
| 266 | 1441311 | 1441598 | - | NZ_LR134524.1 | Peptoniphilus harei |
| 267 | 3536640 | 3536882 | - | NZ_CP030775.1 | Clostridium butyricum |
| 268 | 4133800 | 4134084 | - | NZ_CP031223.1 | Psychrobacillus glaciei |
| 269 | 1477111 | 1477398 | - | NZ_CP019728.1 | Jeotgalibaca dankookensis |
| 270 | 3265732 | 3266019 | + | NZ_CP064060.1 | Anoxybacillus caldiproteolyticus |
| 271 | 619446 | 619703 | - | NZ_CP019607.1 | Tessaracoccus flavescens |
| 272 | 241328 | 241579 | + | NZ_CP048103.1 | Kroppenstedtia eburnea |
| 273 | 681914 | 682177 | + | NC_021252.1 | Amycolatopsis keratiniphila |
| 274 | 7759731 | 7759994 | - | NZ_CP008953.1 | Amycolatopsis japonica |
| 275 | 8671703 | 8671966 | - | NZ_CP016174.1 | Amycolatopsis orientalis |
| 276 | 503574 | 503858 | + | NZ_CP016843.1 | Carnobacterium divergens |
| 277 | 380170 | 380454 | + | NZ_CP011102.1 | Listeria weihenstephanensis |
| 278 | 4437514 | 4437807 | - | NZ_CP011803.1 | Clostridium carboxidivorans P7 |
| 279 | 1888855 | 1889100 | - | NZ_CP032627.1 | Lactococcus allomyrinae |
| 280 | 2600734 | 2601018 | - | NZ_LR134483.1 | Listeria grayi |
| 281 | 267934 | 268227 | + | NZ_CP032416.1 | Clostridium fermenticellae |
| 282 | 647411 | 647686 | + | NZ_CP016076.1 | Actinoalloteichus fjordicus |
| 283 | 3077390 | 3077641 | - | NZ_CP048104.1 | Kroppenstedtia pulmonis |
| 284 | 2550054 | 2550353 | - | NZ_CP031421.1 | Microbacterium oleivorans |
| 285 | 261427 | 261702 | - | NZ_CP015235.1 | Rhodococcus fascians D188 |
| 286 | 400162 | 400425 | + | NC_013159.1 | Saccharomonospora viridis DSM 43017 |
| 287 | 5287891 | 5288184 | - | NZ_CP020953.1 | Clostridium drakei |
| 288 | 4636017 | 4636310 | + | NZ_CP009933.1 | Clostridium scatologenes |
| 289 | 131252 | 131536 | + | NZ_CP016540.2 | Planococcus versutus |
| 290 | 129284 | 129574 | + | NC_014377.1 | Thermosediminibacter oceani DSM 16646 |
| 291 | 4576247 | 4576537 | - | NC_009633.1 | Alkaliphilus metalliredigens QYMF |
| 292 | 641523 | 641786 | + | NZ_CP016353.1 | Prauserella marina |
| 293 | 201687 | 201932 | + | NZ_CP060720.1 | Vagococcus carniphilus |
| 294 | 172246 | 172530 | + | NZ_CP038015.1 | Paenisporosarcina antarctica |
| 295 | 576997 | 577284 | - | NZ_CP049740.1 | Jeotgalibaca arthritidis |
| 296 | 1892661 | 1892918 | - | NZ_CP019606.1 | Tessaracoccus aquimaris |
| 297 | 129688 | 129975 | + | NZ_CP024035.1 | Priestia aryabhattai |
| 298 | 2124065 | 2124352 | - | NZ_CP017267.1 | Vagococcus teuberi |
| 299 | 2155415 | 2155672 | - | NZ_CP012047.1 | Tetragenococcus halophilus |
| 300 | 899503 | 899808 | + | NZ_AP023396.1 | Nocardia wallacei |
| 301 | 40427 | 40672 | - | NZ_CP070872.1 | Lactococcus taiwanensis |
| 302 | 754720 | 755031 | + | NC_022116.1 | Amycolatopsis mediterranei RB |
| 303 | 692512 | 692754 | + | NZ_LT635772.1 | Anaerococcus mediterraneensis |
| 304 | 6027253 | 6027516 | - | NZ_CP041695.1 | Nocardia otitidiscaviarum |
| 305 | 625248 | 625523 | + | NZ_CP022521.1 | Actinoalloteichus hoggarensis |
| 306 | 4737088 | 4737375 | + | NZ_CP018866.1 | Sutcliffiella cohnii |
| 307 | 482010 | 482309 | + | NZ_CP031423.1 | Microbacterium lemovicicum |
| 308 | 3576740 | 3577003 | - | NZ_CP027433.1 | Gordonia iterans |
| 309 | 2225113 | 2225358 | - | NC_022369.1 | Lactococcus lactis subsp. cremoris KW2 |
| 310 | 3679500 | 3679763 | - | NC_011831.1 | Chloroflexus aggregans DSM 9485 |
| 311 | 796096 | 796401 | + | NC_006361.1 | Nocardia farcinica IFM 10152 |
| 312 | 321049 | 321306 | + | NZ_CP010822.1 | Thermus aquaticus Y51MC23 |
| 313 | 739366 | 739650 | + | NZ_CP017713.1 | Loigolactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM 20001 |
| 314 | 270308 | 270562 | - | NZ_LT996886.1 | Tessaracoccus timonensis |
| 315 | 256819 | 257079 | + | NC_022198.1 | Corynebacterium argentoratense DSM 44202 |
| 316 | 2432922 | 2433164 | - | NZ_AP022822.1 | Enterococcus saigonensis |
| 317 | 236814 | 237101 | + | NZ_LS483306.1 | Enterococcus cecorum |
| 318 | 2577258 | 2577545 | - | NZ_CP011361.2 | Salimicrobium jeotgali |
| 319 | 1618075 | 1618380 | + | NZ_LR134352.1 | Nocardia asteroides |
| 320 | 1385599 | 1385898 | - | NZ_CP049253.1 | Microbacterium amylolyticum |
| 321 | 181189 | 181476 | + | NZ_CP034118.1 | Staphylospora marina |
| 322 | 2237096 | 2237356 | - | NC_015673.1 | Corynebacterium resistens DSM 45100 |
| 323 | 700830 | 701135 | - | NZ_CP026746.1 | Nocardia cyriacigeorgica |
| 324 | 410676 | 410936 | + | NZ_CP060789.1 | Tessaracoccus defluvii |
| 325 | 1155176 | 1155433 | + | NZ_CP027783.1 | Tetragenococcus osmophilus |
| 326 | 469425 | 469685 | + | NZ_CP006841.1 | Corynebacterium lactis RW2-5 |
| 327 | 482850 | 483125 | - | NZ_CP015079.1 | Nocardioides dokdonensis FR1436 |
| 328 | 394504 | 394779 | + | NZ_CP049257.1 | Nocardioides anomalus |
| 329 | 981525 | 981788 | - | NZ_CP049255.1 | Microbacterium endophyticum |
| 330 | 2123599 | 2123859 | + | NZ_CP068168.1 | Corynebacterium amycolatum |
| 331 | 631792 | 632064 | - | NZ_CP009312.1 | Lawsonella clevelandensis |
| 332 | 1729369 | 1729662 | - | NZ_CP014209.1 | Isoptericola dokdonensis DS-3 |
| 333 | 158207 | 158455 | - | NZ_CP065637.1 | Lactococcus garvieae |
| 334 | 400335 | 400625 | + | NZ_CP064760.1 | Microbacterium schleiferi |
| 335 | 1890682 | 1890939 | - | NZ_CP046883.1 | Corynebacterium anserum |
| 336 | 1961951 | 1962256 | - | NZ_CP033897.1 | Corynebacterium gerontici |
| 337 | 2041411 | 2041716 | - | NZ_CP033898.1 | Corynebacterium pseudopelargi |
| 338 | 2058111 | 2058416 | - | NZ_CP035299.1 | Corynebacterium pelargi |
| 339 | 63612 | 63854 | + | NC_020207.1 | Enterococcus faecium ATCC 8459 = NRRL B-2354 |
| 340 | 70719 | 70961 | + | NZ_CP065211.1 | Enterococcus lactis |
| 341 | 588902 | 589144 | - | NZ_CP023011.2 | Enterococcus hirae |
| 342 | 3158974 | 3159216 | + | NZ_CP018061.1 | Enterococcus mundtii |
| 343 | 2859991 | 2860245 | + | NZ_CP036402.1 | Egibacter rhizosphaerae |
| 344 | 3273631 | 3273915 | - | NC_006177.1 | Symbiobacterium thermophilum IAM 14863 |
| 345 | 1134231 | 1134476 | + | NZ_CP049887.1 | Vagococcus hydrophili |
| 346 | 1331498 | 1331752 | + | NZ_CP022295.1 | Nocardioides aromaticivorans |
| 347 | 3654563 | 3654820 | + | NZ_CP044344.1 | Nocardioides cynanchi |
| 348 | 1986698 | 1987003 | + | NZ_AP023172.1 | Rhodococcus qingshengii |
| 349 | 688035 | 688337 | - | NZ_CP061344.1 | Microbacterium hominis |
| 350 | 1810892 | 1811185 | - | NZ_CP041217.1 | Saccharibacillus brassicae |
| 351 | 544510 | 544761 | + | NZ_CP014324.1 | Oenococcus oeni |
| 352 | 219474 | 219725 | + | NZ_CP058670.1 | Chryseoglobus indicus |
| 353 | 1775786 | 1776073 | - | NZ_LS483405.1 | Levilactobacillus brevis |
| 354 | 92871 | 93155 | + | NZ_CP041364.1 | Schleiferilactobacillus harbinensis |
| 355 | 397005 | 397310 | + | NZ_CP009245.1 | Corynebacterium aquilae DSM 44791 |
| 356 | 3874523 | 3874783 | + | NC_016111.1 | Streptomyces cattleya NRRL 8057 = DSM 46488 |
| 357 | 2079049 | 2079306 | - | NZ_CP035485.1 | Salicibibacter halophilus |
| 358 | 728698 | 729000 | - | NC_015707.1 | Pseudothermotoga thermarum DSM 5069 |
| 359 | 3147382 | 3147633 | + | NZ_CP035810.1 | Brevibacterium luteolum |
| 360 | 68110 | 68352 | + | NZ_CP023074.1 | Enterococcus thailandicus |
| 361 | 2397212 | 2397508 | - | NZ_CP038256.1 | Microbacterium sediminis |
| 362 | 2925534 | 2925845 | - | NZ_CP018762.1 | Microbacterium aurum |
| 363 | 548167 | 548466 | + | NZ_CP044232.1 | Microbacterium lushaniae |
| 364 | 2487479 | 2487733 | + | NZ_LN849456.1 | Devriesea agamarum |
| 365 | 4113272 | 4113535 | - | NC_016906.1 | Gordonia polyisoprenivorans VH2 |
| 366 | 645809 | 646108 | - | NZ_CP035494.1 | Microbacterium protaetiae |
| 367 | 3074039 | 3074290 | - | NZ_CP031422.1 | Microbacterium oxydans |
| 368 | 2968883 | 2969200 | - | NZ_CP034279.1 | Streptomyces ficellus |
| 369 | 2776655 | 2776906 | - | NZ_CP031425.1 | Microbacterium foliorum |
| 370 | 2007052 | 2007300 | + | NZ_LT996885.1 | Dialister massiliensis |
| 371 | 303859 | 304113 | + | NZ_CP007032.1 | Desulfitobacterium metallireducens DSM 15288 |
| 372 | 2590688 | 2590981 | - | NZ_AP019309.1 | Intestinibaculum porci |
| 373 | 4310437 | 4310694 | - | NZ_CP009896.1 | Pimelobacter simplex |
| 374 | 930629 | 930931 | - | NZ_CP022316.1 | Brachybacterium avium |
| 375 | 1547182 | 1547496 | - | NZ_CP070228.1 | Arcanobacterium phocisimile |
| 376 | 2080422 | 2080682 | + | NZ_LT906481.1 | Corynebacterium urealyticum |
| 377 | 879257 | 879508 | - | NZ_CP032630.1 | Protaetiibacter intestinalis |
| 378 | 1100071 | 1100322 | + | NZ_CP029684.2 | Oenococcus sicerae |
| 379 | 1661897 | 1662157 | + | NZ_CP041694.1 | Cellulosimicrobium cellulans |
| 380 | 4723912 | 4724214 | - | NC_013757.1 | Geodermatophilus obscurus DSM 43160 |
| 381 | 548363 | 548608 | + | NZ_CP030105.1 | Lactiplantibacillus plantarum |
| 382 | 1062873 | 1063118 | + | NZ_CP032757.1 | Lactiplantibacillus pentosus |
| 383 | 3503070 | 3503363 | + | NZ_CP035495.1 | Xylanimonas allomyrinae |
| 384 | 641221 | 641523 | + | NZ_LS483423.1 | Jonesia denitrificans |
| 385 | 1542933 | 1543235 | + | NZ_CP023563.1 | Brachybacterium vulturis |
| 386 | 197011 | 197310 | + | NZ_CP040508.1 | Rhodoluna limnophila |
| 387 | 2050522 | 2050824 | - | NZ_CP031356.1 | Brachybacterium saurashtrense |
| 388 | 48694 | 48975 | + | NZ_CP040676.1 | Exiguobacterium mexicanum |
| 389 | 513885 | 514172 | + | NZ_CP019981.1 | Pediococcus inopinatus |
| 390 | 2650583 | 2650885 | - | NC_013172.1 | Brachybacterium faecium DSM 4810 |
| 391 | 463179 | 463466 | + | NC_019903.1 | Desulfitobacterium dichloroeliminans LMG P-21439 |
| 392 | 695586 | 695900 | + | NZ_LS483427.1 | Arcanobacterium haemolyticum |
| 393 | 233484 | 233738 | + | NC_009253.1 | Desulfotomaculum reducens MI-1 |
| 394 | 2582964 | 2583263 | + | NZ_CP034438.1 | Flaviflexus salsibiostraticola |
| 395 | 359432 | 359731 | - | NZ_LS974202.1 | Mesotoga infera |
| 396 | 572642 | 572941 | + | NZ_CP038266.1 | Microbacterium wangchenii |
| 397 | 731505 | 731804 | + | NC_017934.1 | Mesotoga prima MesG1.Ag.4.2 |
| 398 | 392960 | 393241 | + | NC_013943.1 | Denitrovibrio acetiphilus DSM 12809 |
| 399 | 193441 | 193722 | - | NZ_CP046314.1 | Gemella morbillorum |
| 400 | 1114497 | 1114754 | + | NC_013595.1 | Streptosporangium roseum DSM 43021 |
| 401 | 491262 | 491552 | + | NZ_CP044231.1 | Microbacterium caowuchunii |
| 402 | 1693289 | 1693543 | + | NC_022795.1 | Pseudothermotoga hypogea DSM 11164 = NBRC 106472 |
| 403 | 1081887 | 1082165 | + | NZ_CP035108.1 | Geovibrio thiophilus |
| 404 | 944439 | 944741 | + | NZ_CP045572.1 | Nonomuraea nitratireducens |
| 405 | 2771876 | 2772181 | - | NZ_CP039292.1 | Actinomyces procaprae |
| 406 | 3436645 | 3436896 | - | NZ_AP014924.1 | Limnochorda pilosa |
| 407 | 292503 | 292787 | - | NZ_CP059563.1 | Conchiformibius steedae |
| 408 | 567777 | 568067 | + | NZ_CP059564.1 | Alysiella filiformis |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_010001.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00252.20 | 1.0 | 406 | 2261 | same-strand | Ribosomal protein L16p/L10e |
| 2 | PF00189.22 | 1.0 | 406 | 1577 | same-strand | Ribosomal protein S3, C-terminal domain |
| 3 | PF07650.19 | 1.0 | 406 | 1577 | same-strand | KH domain |
| 4 | PF00237.21 | 1.0 | 406 | 1216 | same-strand | Ribosomal protein L22p/L17e |
| 5 | PF00203.23 | 1.0 | 407 | 915.0 | same-strand | Ribosomal protein S19 |
| 6 | PF03947.20 | 1.0 | 406 | 29 | same-strand | Ribosomal Proteins L2, C-terminal domain |
| 7 | PF00181.25 | 1.0 | 406 | 29 | same-strand | Ribosomal Proteins L2, RNA binding domain |
| 8 | PF00573.24 | 1.0 | 405 | 0.0 | same-strand | Ribosomal protein L4/L1 family |
| 9 | PF00338.24 | 1.0 | 405 | 1351.0 | same-strand | Ribosomal protein S10p/S20e |
++ More..