* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_003103.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00085.22
|
0.75
|
3
|
4944
|
opposite-strand
|
Thioredoxin
|
2
|
PF13098.8
|
0.75
|
3
|
4944
|
opposite-strand
|
Thioredoxin-like domain
|
3
|
PF13899.8
|
0.75
|
3
|
4944
|
opposite-strand
|
Thioredoxin-like
|
4
|
PF00005.29
|
0.75
|
3
|
4183
|
opposite-strand
|
ABC transporter
|
5
|
PF01061.26
|
0.75
|
3
|
3406
|
opposite-strand
|
ABC-2 type transporter
|
6
|
PF00132.26
|
0.75
|
3
|
778.5
|
same-strand
|
Bacterial transferase hexapeptide (six repeats)
|
7
|
PF13720.8
|
0.75
|
3
|
31
|
same-strand
|
Udp N-acetylglucosamine O-acyltransferase; Domain 2
|
8
|
PF07977.15
|
0.75
|
3
|
833
|
same-strand
|
FabA-like domain
|
9
|
PF04613.16
|
0.75
|
3
|
1466
|
same-strand
|
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD
|
10
|
PF14602.8
|
0.75
|
3
|
1466
|
same-strand
|
Hexapeptide repeat of succinyl-transferase
|
++ More..