* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_003103.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF07724.16
|
0.67
|
2
|
553.0
|
opposite-strand
|
AAA domain (Cdc48 subfamily)
|
2
|
PF17871.3
|
1.0
|
3
|
508
|
opposite-strand
|
AAA lid domain
|
3
|
PF10431.11
|
1.0
|
3
|
604
|
opposite-strand
|
C-terminal, D2-small domain, of ClpB protein
|
4
|
PF00004.31
|
1.0
|
3
|
508
|
opposite-strand
|
ATPase family associated with various cellular activities (AAA)
|
5
|
PF02861.22
|
1.0
|
3
|
508
|
opposite-strand
|
Clp amino terminal domain, pathogenicity island component
|
6
|
PF07728.16
|
0.67
|
2
|
553.0
|
opposite-strand
|
AAA domain (dynein-related subfamily)
|
7
|
PF17462.4
|
1.0
|
3
|
3324
|
same-strand
|
Family of unknown function (DUF5424)
|
8
|
PF00814.27
|
1.0
|
3
|
3942
|
same-strand
|
tRNA N6-adenosine threonylcarbamoyltransferase
|
9
|
PF00487.26
|
0.67
|
2
|
5167.0
|
same-strand
|
Fatty acid desaturase
|
++ More..