* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_016639.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF01171.22
|
0.75
|
3
|
3869
|
same-strand
|
PP-loop family
|
2
|
PF01434.20
|
1.0
|
4
|
1918.0
|
same-strand
|
Peptidase family M41
|
3
|
PF00004.31
|
1.0
|
4
|
1918.0
|
same-strand
|
ATPase family associated with various cellular activities (AAA)
|
4
|
PF06480.17
|
1.0
|
4
|
1918.0
|
same-strand
|
FtsH Extracellular
|
5
|
PF17862.3
|
1.0
|
4
|
1918.0
|
same-strand
|
AAA+ lid domain
|
6
|
PF13085.8
|
1.0
|
4
|
288.5
|
same-strand
|
2Fe-2S iron-sulfur cluster binding domain
|
7
|
PF13534.8
|
1.0
|
4
|
288.5
|
same-strand
|
4Fe-4S dicluster domain
|
8
|
PF13237.8
|
1.0
|
4
|
288.5
|
same-strand
|
4Fe-4S dicluster domain
|
9
|
PF13183.8
|
1.0
|
4
|
288.5
|
same-strand
|
4Fe-4S dicluster domain
|
10
|
PF02636.19
|
1.0
|
4
|
132.5
|
opposite-strand
|
Putative S-adenosyl-L-methionine-dependent methyltransferase
|
11
|
PF01790.20
|
1.0
|
4
|
1331.5
|
opposite-strand
|
Prolipoprotein diacylglyceryl transferase
|
12
|
PF00924.20
|
1.0
|
4
|
2354.0
|
same-strand
|
Mechanosensitive ion channel
|
13
|
PF14849.8
|
1.0
|
4
|
3709.0
|
same-strand
|
YidC periplasmic domain
|
14
|
PF02096.22
|
1.0
|
4
|
3709.0
|
same-strand
|
60Kd inner membrane protein
|
15
|
PF01066.23
|
1.0
|
4
|
5395.0
|
same-strand
|
CDP-alcohol phosphatidyltransferase
|
++ More..