Result : Q92JD4

Protein Information

• Protein name: Uncharacterized protein RC0133
• NCBI Accession ID: AE006914.1
• Organism: Rickettsia conorii (strain ATCC VR-613 / Malish 7)
• Left: 127305
• Right: 127601
• Strand: -
• Nucleotide Sequence: TTGAATCTAAAGGATCAAGAACAAACAAAAATTGTAAATAATTTAATAGCTAAAACTGATTATTTATTATCTAACAATTTAAATCCGTTGGAAAGTGTACGTTCAGAAATTAATAAAACATTAGCACTTACTCATTCTACCTACCAACAAGATAGTAATATTAAAAAATCCTGGATACAAAAAAGTGTACAAAAAATAAAAGATTTGTTCATAAATATTTTTAGTAGTAATAAAACAAAAAATGAACCAAAATTAAACTTAACAAGTGATAAGATATTAAAAAAATATAAGTACTAA
• Sequence: MNLKDQEQTKIVNNLIAKTDYLLSNNLNPLESVRSEINKTLALTHSTYQQDSNIKKSWIQKSVQKIKDLFINIFSSNKTKNEPKLNLTSDKILKKYKY
• Source of smORF: Swiss-Prot
• Pubmed ID: 11557893
• Functional Category: Others
• Uniprot ID: Q92JD4
• ORF Length (Amino Acid): 98

Conservation Analysis

No. of Species: 2

Sr.No.	Left Position	Right Position	Strand	NCBI Accession id	Species Name
1	127305	127601	-	NC_003103.1	Rickettsia conorii str. Malish 7
2	129847	130131	-	NC_010263.3	Rickettsia rickettsii str. Iowa

Neighborhood Conservation Analysis

^* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
^* 'Small ORF' represents the entry/query analyzed.
^* Image generated using 'gggenes'(R-Package).

Neighborhood Representative Chosen(Species): NC_003103.1

Sr.No.	Domain	Co-occurrence Frequency	No. of species in which domain occurs with smORF	Median distance b/w smORF and domain bearing ORFs	Orientation relative to smORF	PFAM Information
1	PF02405.18	1.0	2	1716.0	opposite-strand	Permease MlaE
2	PF00005.29	1.0	2	808.5	opposite-strand	ABC transporter
3	PF02463.21	1.0	2	808.5	opposite-strand	RecF/RecN/SMC N terminal domain
4	PF17629.4	1.0	2	558.5	opposite-strand	Family of unknown function (DUF5510)
5	PF00830.21	1.0	2	1558.0	opposite-strand	Ribosomal L28 family
6	PF01197.20	1.0	2	1848.0	opposite-strand	Ribosomal protein L31