Protein Information |
Information Type | Description |
---|---|
Protein name | Uncharacterized protein RC0133 |
NCBI Accession ID | AE006914.1 |
Organism | Rickettsia conorii (strain ATCC VR-613 / Malish 7) |
Left | 127305 |
Right | 127601 |
Strand | - |
Nucleotide Sequence | TTGAATCTAAAGGATCAAGAACAAACAAAAATTGTAAATAATTTAATAGCTAAAACTGATTATTTATTATCTAACAATTTAAATCCGTTGGAAAGTGTACGTTCAGAAATTAATAAAACATTAGCACTTACTCATTCTACCTACCAACAAGATAGTAATATTAAAAAATCCTGGATACAAAAAAGTGTACAAAAAATAAAAGATTTGTTCATAAATATTTTTAGTAGTAATAAAACAAAAAATGAACCAAAATTAAACTTAACAAGTGATAAGATATTAAAAAAATATAAGTACTAA |
Sequence | MNLKDQEQTKIVNNLIAKTDYLLSNNLNPLESVRSEINKTLALTHSTYQQDSNIKKSWIQKSVQKIKDLFINIFSSNKTKNEPKLNLTSDKILKKYKY |
Source of smORF | Swiss-Prot |
Function | |
Pubmed ID | 11557893 |
Domain | |
Functional Category | Others |
Uniprot ID | Q92JD4 |
ORF Length (Amino Acid) | 98 |
Conservation Analysis |
Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
---|---|---|---|---|---|
1 | 127305 | 127601 | - | NC_003103.1 | Rickettsia conorii str. Malish 7 |
2 | 129847 | 130131 | - | NC_010263.3 | Rickettsia rickettsii str. Iowa |
Neighborhood Conservation Analysis |
Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
---|---|---|---|---|---|---|
1 | PF02405.18 | 1.0 | 2 | 1716.0 | opposite-strand | Permease MlaE |
2 | PF00005.29 | 1.0 | 2 | 808.5 | opposite-strand | ABC transporter |
3 | PF02463.21 | 1.0 | 2 | 808.5 | opposite-strand | RecF/RecN/SMC N terminal domain |
4 | PF17629.4 | 1.0 | 2 | 558.5 | opposite-strand | Family of unknown function (DUF5510) |
5 | PF00830.21 | 1.0 | 2 | 1558.0 | opposite-strand | Ribosomal L28 family |
6 | PF01197.20 | 1.0 | 2 | 1848.0 | opposite-strand | Ribosomal protein L31 |