* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_AP014879.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF03960.17
|
0.67
|
2
|
3429.0
|
opposite-strand
|
ArsC family
|
2
|
PF03631.17
|
0.67
|
2
|
2214.0
|
same-strand
|
Virulence factor BrkB
|
3
|
PF00578.23
|
0.67
|
2
|
86.5
|
same-strand
|
AhpC/TSA family
|
4
|
PF08534.12
|
0.67
|
2
|
86.5
|
same-strand
|
Redoxin
|
5
|
PF00587.27
|
0.67
|
2
|
3033.0
|
opposite-strand
|
tRNA synthetase class II core domain (G, H, P, S and T)
|
6
|
PF04073.17
|
0.67
|
2
|
3033.0
|
opposite-strand
|
Aminoacyl-tRNA editing domain
|
7
|
PF03129.22
|
0.67
|
2
|
3033.0
|
opposite-strand
|
Anticodon binding domain
|
++ More..