Protein Information |
Information Type | Description |
---|---|
Protein name | UPF0416 protein RC0826 |
NCBI Accession ID | AE006914.1 |
Organism | Rickettsia conorii (strain ATCC VR-613 / Malish 7) |
Left | 779765 |
Right | 780058 |
Strand | + |
Nucleotide Sequence | ATGCGAATATTTGTAAAAGCAGCAATATCAACGGCTGCATGGAGATTTTATGCTCATCCTACAGTTGCTATGGGGATTTGTGTTGGAACAGCTCTTGCATATTCGCCGGAGAACACATTTGAGTTATTAAAAAATACGACTTATACAGGAATAGAAGCAGCAAAATTTGCTTATGAAAATACAGCAGGAATAGTAAACGGAATAGCCGGCTTAGCTCATCTTGTGTATGATAACTTACCAAGCTACAGCGAAACTCCTCAAGTGGATCTAGTCGGTAGCATAGAAATTTCATGA |
Sequence | MRIFVKAAISTAAWRFYAHPTVAMGICVGTALAYSPENTFELLKNTTYTGIEAAKFAYENTAGIVNGIAGLAHLVYDNLPSYSETPQVDLVGSIEIS |
Source of smORF | Swiss-Prot |
Function | |
Pubmed ID | 11557893 |
Domain | |
Functional Category | Others |
Uniprot ID | Q92HE5 |
ORF Length (Amino Acid) | 97 |
Conservation Analysis |
Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
---|---|---|---|---|---|
1 | 779765 | 780058 | + | NC_003103.1 | Rickettsia conorii str. Malish 7 |
2 | 787332 | 787643 | + | NC_016639.1 | Rickettsia slovaca 13-B |
3 | 782445 | 782756 | + | NZ_AP019864.1 | Rickettsia heilongjiangensis |
4 | 786730 | 786987 | + | NC_010263.3 | Rickettsia rickettsii str. Iowa |
5 | 1001904 | 1002188 | - | NC_007940.1 | Rickettsia bellii RML369-C |
Neighborhood Conservation Analysis |
Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
---|---|---|---|---|---|---|
1 | PF02082.22 | 0.8 | 4 | 2751.0 | same-strand | Iron-dependent Transcriptional regulator |
2 | PF01728.21 | 0.8 | 4 | 2001.0 | opposite-strand | FtsJ-like methyltransferase |
3 | PF00579.27 | 1.0 | 5 | 611 | opposite-strand | tRNA synthetases class I (W and Y) |