Result : Q92EC3
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | UPF0237 protein lin0537 |
| NCBI Accession ID | AL596165.1 |
| Organism | Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262) |
| Left | 108542 |
| Right | 108811 |
| Strand | + |
| Nucleotide Sequence | GTGAGAGCTGTACTTACTGTAATTGGAAAAGATAATGTGGGAATTGTCGCTGGAGTTAGTAATAAATTGGCAGAACTTAACATCAATATTGTCGACGTATCACAAACGATTATGGATGGATATTTTACGATGATGATGATGTGCGATATTAGCCAGATAACGAAAGAATTTGATGAAGTAAAAACAGAATTAACTGGAAAAGGTGAAGAACTCCAAGTAAAAATACATATTCAACGTGAAGAAATTTTTAACGCAATGCATAAACTATAG |
| Sequence | MRAVLTVIGKDNVGIVAGVSNKLAELNINIVDVSQTIMDGYFTMMMMCDISQITKEFDEVKTELTGKGEELQVKIHIQREEIFNAMHKL |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl09141. Profile Description: ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain is a structural motif of 70-90 amino acids that functions in the control of metabolism, solute transport and signal transduction. They are thus found in a variety of different proteins in a variety of different arrangements. In mammalian phenylalanine hydroxylase the domain forms no contacts but promotes an allosteric effect despite the apparent lack of ligand binding. |
| Pubmed ID | 11679669 |
| Domain | CDD:415594 |
| Functional Category | Others |
| Uniprot ID | Q92EC3 |
| ORF Length (Amino Acid) | 89 |
++ More..
| Conservation Analysis |
No. of Species: 149
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 531870 | 532139 | + | NZ_LT906444.1 | Listeria welshimeri |
| 2 | 570916 | 571185 | + | NC_003210.1 | Listeria monocytogenes EGD-e |
| 3 | 544918 | 545187 | + | NZ_CP009577.1 | Listeria ivanovii subsp. ivanovii |
| 4 | 474719 | 474988 | + | NC_013891.1 | Listeria seeligeri serovar 1/2b str. SLCC3954 |
| 5 | 2944533 | 2944802 | - | NZ_CP011102.1 | Listeria weihenstephanensis |
| 6 | 2632083 | 2632352 | + | NZ_CP009709.1 | Weizmannia coagulans DSM 1 = ATCC 7050 |
| 7 | 2247555 | 2247788 | - | NZ_LR134483.1 | Listeria grayi |
| 8 | 2964849 | 2965118 | - | NZ_AP021853.1 | Sporolactobacillus terrae |
| 9 | 395161 | 395430 | + | NZ_CP007445.1 | Gilliamella apicola |
| 10 | 1921246 | 1921515 | - | NZ_CP012024.1 | Bacillus smithii |
| 11 | 2013174 | 2013443 | - | NZ_CP009056.1 | Frischella perrara |
| 12 | 31453 | 31722 | + | NZ_CP021874.1 | Enterococcus wangshanyuanii |
| 13 | 3833686 | 3833997 | + | NZ_CP021874.1 | Enterococcus wangshanyuanii |
| 14 | 1723461 | 1723730 | - | NZ_CP012047.1 | Tetragenococcus halophilus |
| 15 | 1895104 | 1895373 | - | NZ_CP027286.1 | Clostridium chauvoei |
| 16 | 1572684 | 1572953 | + | NZ_CP017253.2 | Clostridium taeniosporum |
| 17 | 163332 | 163601 | + | NZ_CP017713.1 | Loigolactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM 20001 |
| 18 | 2684108 | 2684377 | + | NZ_CP071376.1 | Clostridium gasigenes |
| 19 | 2913549 | 2913818 | + | NZ_CP023671.1 | Clostridium septicum |
| 20 | 1542836 | 1543105 | + | NZ_CP027783.1 | Tetragenococcus osmophilus |
| 21 | 1270593 | 1270859 | + | NZ_AP022822.1 | Enterococcus saigonensis |
| 22 | 2861815 | 2862084 | + | NZ_CP009933.1 | Clostridium scatologenes |
| 23 | 1459014 | 1459283 | - | NZ_CP020953.1 | Clostridium drakei |
| 24 | 193048 | 193314 | - | NC_020208.1 | Enterococcus faecium ATCC 8459 = NRRL B-2354 |
| 25 | 1996866 | 1997135 | - | NZ_CP016786.1 | Clostridium isatidis |
| 26 | 350205 | 350474 | - | NZ_CP011803.1 | Clostridium carboxidivorans P7 |
| 27 | 4584655 | 4584924 | - | NC_020291.1 | Clostridium saccharoperbutylacetonicum N1-4(HMT) |
| 28 | 1370822 | 1371091 | + | NZ_CP030775.1 | Clostridium butyricum |
| 29 | 66885 | 67154 | + | NZ_CP018180.1 | Liquorilactobacillus nagelii |
| 30 | 2639625 | 2639894 | + | NZ_CP043998.1 | Clostridium diolis |
| 31 | 1952728 | 1952994 | - | NC_020995.1 | Enterococcus casseliflavus EC20 |
| 32 | 326413 | 326679 | - | NZ_CP023392.1 | Lactococcus raffinolactis |
| 33 | 552285 | 552554 | + | NC_015687.1 | Clostridium acetobutylicum DSM 1731 |
| 34 | 2241438 | 2241707 | - | NZ_CP025197.1 | Acetivibrio saccincola |
| 35 | 2122168 | 2122437 | - | NZ_CP016502.1 | Acetivibrio thermocellus DSM 2360 |
| 36 | 641657 | 641929 | + | NZ_CP042410.1 | Leuconostoc citreum |
| 37 | 2310279 | 2310545 | - | NZ_CP012034.1 | Companilactobacillus ginsenosidimutans |
| 38 | 839991 | 840260 | + | NZ_LT906477.1 | Clostridium cochlearium |
| 39 | 1002439 | 1002702 | + | NZ_CP070872.1 | Lactococcus taiwanensis |
| 40 | 2582433 | 2582738 | + | NC_015519.1 | Tepidanaerobacter acetatoxydans Re1 |
| 41 | 1597134 | 1597400 | - | NZ_CP049366.1 | Companilactobacillus pabuli |
| 42 | 1973012 | 1973278 | - | NZ_CP017702.1 | Companilactobacillus farciminis KCTC 3681 = DSM 20184 |
| 43 | 1293007 | 1293279 | + | NZ_AP012334.1 | Scardovia inopinata JCM 12537 |
| 44 | 1619693 | 1619962 | - | NZ_CP014204.2 | Clostridium baratii |
| 45 | 3339319 | 3339591 | - | NZ_CP022464.2 | Enterocloster bolteae |
| 46 | 2071030 | 2071299 | - | NC_011898.1 | Ruminiclostridium cellulolyticum H10 |
| 47 | 2023053 | 2023319 | - | NZ_CP031733.1 | Streptococcus chenjunshii |
| 48 | 963196 | 963459 | + | NC_022369.1 | Lactococcus lactis subsp. cremoris KW2 |
| 49 | 182397 | 182666 | + | NZ_CP011403.1 | Ligilactobacillus salivarius str. Ren |
| 50 | 1406641 | 1406907 | - | NZ_CP017194.1 | Lactococcus carnosus |
| 51 | 1489575 | 1489841 | - | NZ_CP017195.1 | Lactococcus paracarnosus |
| 52 | 1726807 | 1727076 | + | NC_022571.1 | Clostridium saccharobutylicum DSM 13864 |
| 53 | 1131840 | 1132109 | + | NZ_CP019870.1 | Clostridioides difficile |
| 54 | 1900858 | 1901124 | - | NZ_CP040736.1 | Companilactobacillus futsaii |
| 55 | 3527669 | 3527938 | + | NZ_CP040924.1 | Clostridium thermarum |
| 56 | 2488872 | 2489141 | - | NZ_CP061336.1 | Ruminiclostridium herbifermentans |
| 57 | 1576587 | 1576856 | + | NC_016627.1 | Acetivibrio clariflavus DSM 19732 |
| 58 | 892683 | 892940 | + | NZ_CP014324.1 | Oenococcus oeni |
| 59 | 343415 | 343648 | + | NZ_CP027002.1 | [Ruminococcus] gnavus ATCC 29149 |
| 60 | 1265271 | 1265540 | - | NZ_CP034465.1 | Jeotgalibaca ciconiae |
| 61 | 1557776 | 1558042 | + | NZ_LR134341.1 | Streptococcus pseudoporcinus |
| 62 | 918382 | 918654 | + | NC_018631.1 | Leuconostoc gelidum JB7 |
| 63 | 202749 | 203021 | - | NC_014136.1 | Leuconostoc kimchii IMSNU 11154 |
| 64 | 3212813 | 3213082 | + | NZ_CP021850.1 | Pseudoclostridium thermosuccinogenes |
| 65 | 2230518 | 2230784 | + | NZ_LT906439.1 | Streptococcus merionis |
| 66 | 910989 | 911270 | + | NZ_AP019750.1 | Lactobacillus delbrueckii subsp. delbrueckii |
| 67 | 2052772 | 2053041 | + | NC_016048.1 | Oscillibacter valericigenes Sjm18-20 |
| 68 | 1051910 | 1052173 | - | NZ_CP032627.1 | Lactococcus allomyrinae |
| 69 | 1468200 | 1468451 | + | NZ_CP029684.2 | Oenococcus sicerae |
| 70 | 1520129 | 1520395 | - | NZ_CP013237.1 | Streptococcus mutans |
| 71 | 78842 | 79108 | + | NZ_AP014612.1 | Streptococcus troglodytae |
| 72 | 2404175 | 2404447 | + | NZ_CP039126.1 | Blautia producta |
| 73 | 1025082 | 1025351 | - | NZ_CP049740.1 | Jeotgalibaca arthritidis |
| 74 | 938836 | 939105 | - | NC_014122.1 | Methanocaldococcus infernus ME |
| 75 | 1216128 | 1216394 | - | NZ_CP012541.1 | Campylobacter concisus |
| 76 | 1798952 | 1799221 | + | NZ_CP018906.1 | Lentilactobacillus curieae |
| 77 | 329760 | 330026 | + | NZ_CP053831.1 | Campylobacter mucosalis |
| 78 | 1533382 | 1533651 | - | NZ_CP035807.1 | Thiospirochaeta perfilievii |
| 79 | 1705340 | 1705606 | - | NZ_CP014699.1 | Streptococcus pantholopis |
| 80 | 6445563 | 6445832 | + | NZ_CP048429.1 | Paenibacillus jilunlii |
| 81 | 1350390 | 1350665 | - | NC_007503.1 | Carboxydothermus hydrogenoformans Z-2901 |
| 82 | 3372429 | 3372701 | - | NZ_AP023367.1 | Anaerocolumna cellulosilytica |
| 83 | 129962 | 130234 | + | NZ_CP070062.1 | Coprococcus comes |
| 84 | 1629232 | 1629498 | - | NZ_LR594050.1 | Streptococcus porcinus |
| 85 | 154651 | 154917 | + | NZ_CP029491.1 | Streptococcus sobrinus |
| 86 | 110181 | 110453 | + | NZ_CP009149.1 | Methanocaldococcus bathoardescens |
| 87 | 1646107 | 1646379 | - | NZ_AP012325.1 | Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043 |
| 88 | 1435019 | 1435285 | + | NZ_CP012544.1 | Campylobacter showae |
| 89 | 1909528 | 1909797 | + | NC_014833.1 | Ruminococcus albus 7 = DSM 20455 |
| 90 | 286766 | 287032 | + | NC_012924.1 | Streptococcus suis SC84 |
| 91 | 572528 | 572794 | + | NZ_CP012559.1 | Companilactobacillus heilongjiangensis |
| 92 | 1328036 | 1328305 | + | NC_015732.1 | Treponema caldarium DSM 7334 |
| 93 | 150073 | 150339 | + | NC_017581.1 | Streptococcus thermophilus JIM 8232 |
| 94 | 266796 | 267062 | + | NZ_CP039457.1 | Streptococcus pasteurianus |
| 95 | 4394555 | 4394824 | + | NZ_CP014167.1 | Paenibacillus yonginensis |
| 96 | 1861474 | 1861740 | - | NZ_CP012196.1 | Campylobacter gracilis |
| 97 | 1405001 | 1405273 | - | NC_013156.1 | Methanocaldococcus fervens AG86 |
| 98 | 248429 | 248701 | - | NZ_CP042374.1 | Leuconostoc carnosum |
| 99 | 2040595 | 2040867 | - | NZ_AP012326.1 | Bifidobacterium dentium JCM 1195 = DSM 20436 |
| 100 | 540829 | 541098 | - | NZ_AP014680.1 | Paucilactobacillus hokkaidonensis JCM 18461 |
| 101 | 658153 | 658422 | + | NZ_CP028107.1 | Fusobacterium necrophorum subsp. funduliforme |
| 102 | 121609 | 121875 | + | NZ_LR134275.1 | Streptococcus vestibularis |
| 103 | 4469953 | 4470222 | + | NZ_CP009428.1 | Paenibacillus odorifer |
| 104 | 749406 | 749672 | + | NZ_CP043405.1 | Streptococcus ratti |
| 105 | 681427 | 681693 | + | NZ_CP012543.1 | Campylobacter rectus |
| 106 | 1322981 | 1323250 | + | NZ_CP047121.1 | Lentilactobacillus hilgardii |
| 107 | 787717 | 787983 | + | NZ_AP012544.1 | Lacticaseibacillus casei DSM 20011 = JCM 1134 = ATCC 393 |
| 108 | 801935 | 802201 | + | NZ_LS991421.1 | Lacticaseibacillus zeae |
| 109 | 1127889 | 1128161 | + | NC_015636.1 | Methanothermococcus okinawensis IH1 |
| 110 | 262238 | 262516 | - | NC_015555.1 | Thermoanaerobacterium xylanolyticum LX-11 |
| 111 | 940686 | 940952 | + | NZ_CP032620.1 | Streptococcus koreensis |
| 112 | 2348377 | 2348610 | + | NZ_CP047602.1 | Thermoanaerobacterium aotearoense |
| 113 | 957270 | 957542 | + | NC_013921.1 | Thermoanaerobacter italicus Ab9 |
| 114 | 2218778 | 2219047 | + | NZ_CP015756.1 | Clostridium estertheticum subsp. estertheticum |
| 115 | 951585 | 951863 | + | NZ_CP009170.1 | Thermoanaerobacter kivui |
| 116 | 545960 | 546232 | + | NZ_CP028251.1 | Leuconostoc mesenteroides |
| 117 | 974565 | 974837 | + | NC_014209.1 | Thermoanaerobacter mathranii subsp. mathranii str. A3 |
| 118 | 1141234 | 1141506 | - | NZ_CP015247.1 | Leuconostoc suionicum |
| 119 | 2353905 | 2354174 | + | NC_014624.2 | Eubacterium callanderi |
| 120 | 986975 | 987244 | + | NZ_CP029487.1 | Eubacterium maltosivorans |
| 121 | 4106095 | 4106364 | + | NZ_CP019962.1 | Eubacterium limosum |
| 122 | 1080086 | 1080358 | - | NC_012778.1 | [Eubacterium] eligens ATCC 27750 |
| 123 | 2499855 | 2500124 | - | NZ_CP032757.1 | Lactiplantibacillus pentosus |
| 124 | 1042483 | 1042758 | - | NC_014829.1 | Evansella cellulosilytica DSM 2522 |
| 125 | 1113472 | 1113741 | - | NC_016894.1 | Acetobacterium woodii DSM 1030 |
| 126 | 1562546 | 1562815 | + | NC_015578.1 | Treponema primitia ZAS-2 |
| 127 | 1268282 | 1268548 | - | NZ_LS483306.1 | Enterococcus cecorum |
| 128 | 1534389 | 1534661 | - | NC_000909.1 | Methanocaldococcus jannaschii DSM 2661 |
| 129 | 1811748 | 1812014 | - | NZ_CP041364.1 | Schleiferilactobacillus harbinensis |
| 130 | 94205 | 94474 | - | NZ_CP018796.1 | Lentilactobacillus parabuchneri |
| 131 | 1059979 | 1060245 | + | NZ_CP054015.1 | Streptococcus gallolyticus |
| 132 | 1094921 | 1095193 | + | NZ_CP068170.1 | Erysipelatoclostridium ramosum |
| 133 | 3829056 | 3829325 | + | NZ_CP009288.1 | Paenibacillus durus |
| 134 | 1578459 | 1578725 | - | NZ_CP012805.1 | Streptococcus anginosus |
| 135 | 1517165 | 1517431 | - | NZ_CP034543.1 | Streptococcus periodonticum |
| 136 | 343632 | 343910 | - | NC_014410.1 | Thermoanaerobacterium thermosaccharolyticum DSM 571 |
| 137 | 1533063 | 1533329 | - | NZ_LS483436.1 | Streptococcus intermedius |
| 138 | 626889 | 627155 | + | NZ_CP022680.1 | Streptococcus respiraculi |
| 139 | 3617794 | 3618027 | + | NZ_CP048000.1 | Anaerocolumna sedimenticola |
| 140 | 424916 | 425182 | - | NZ_CP015196.1 | Streptococcus marmotae |
| 141 | 2230291 | 2230563 | - | NZ_CP032364.1 | Lachnoanaerobaculum umeaense |
| 142 | 1746970 | 1747248 | + | NC_014632.1 | Ilyobacter polytropus DSM 2926 |
| 143 | 1475528 | 1475779 | + | NZ_CP040058.1 | Anaerostipes rhamnosivorans |
| 144 | 2068132 | 2068383 | - | NZ_CP036345.1 | Anaerostipes caccae L1-92 |
| 145 | 1826956 | 1827225 | + | NC_008593.1 | Clostridium novyi NT |
| 146 | 1767170 | 1767439 | + | NZ_CP029971.1 | Lentilactobacillus kefiri |
| 147 | 1707543 | 1707794 | + | NC_015562.1 | Methanotorris igneus Kol 5 |
| 148 | 2075520 | 2075795 | + | NZ_CP022278.1 | Neisseria chenwenguii |
| 149 | 952828 | 953094 | + | NZ_CP016953.1 | Streptococcus himalayensis |
| 150 | 1549749 | 1550021 | + | NC_009634.1 | Methanococcus vannielii SB |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LT906444.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF05167.14 | 0.95 | 141 | 15 | same-strand | Uncharacterised ACR (DUF711) |
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