Result : Q8Y2K9
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | UPF0250 protein RSc0326 |
| NCBI Accession ID | AL646052.1 |
| Organism | Ralstonia solanacearum (strain GMI1000) (Pseudomonas solanacearum) |
| Left | 358145 |
| Right | 358438 |
| Strand | - |
| Nucleotide Sequence | ATGACCGACGCCAACGACACCCCCGCCACCCCGCCGCGCGAATCGCTGATCGAGTATCCGAGCGACTTCCCCATCAAGGTGATGGGCAAGATGCAGGACGACTTTGCCGAGACCATCGTGCAGCTGGTGCAGCAGTTCGATCCGGAGTTCCACACCGGCCGCATGGAGATGCGCCCATCGTCCGGAGGCAACTACCTCGGCCTGACCGTGATCGTGCGCGCCACCAGCCGCGAGCAGCTCGACGCGCTGTACCGCGCGCTGACCGCGCACCCGATGGTCAAGGTCGTGCTGTAG |
| Sequence | MTDANDTPATPPRESLIEYPSDFPIKVMGKMQDDFAETIVQLVQQFDPEFHTGRMEMRPSSGGNYLGLTVIVRATSREQLDALYRALTAHPMVKVVL |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl01102. Profile Description: Protein of unknown function (DUF493). hypothetical protein; Provisional |
| Pubmed ID | 11823852 |
| Domain | CDD:412741 |
| Functional Category | Others |
| Uniprot ID | Q8Y2K9 |
| ORF Length (Amino Acid) | 97 |
++ More..
| Conservation Analysis |
No. of Species: 184
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 789843 | 790136 | + | NZ_CP068285.1 | Ralstonia syzygii subsp. celebesensis |
| 2 | 2386356 | 2386649 | - | NZ_CP012943.1 | Ralstonia solanacearum |
| 3 | 252790 | 253092 | - | NZ_CP016022.1 | Ralstonia insidiosa |
| 4 | 2198359 | 2198658 | - | NZ_CP011257.1 | Ralstonia mannitolilytica |
| 5 | 321172 | 321477 | + | NZ_CP039287.1 | Cupriavidus necator H16 |
| 6 | 266059 | 266367 | + | NZ_CP032519.1 | Cupriavidus oxalaticus |
| 7 | 433148 | 433453 | - | NZ_CP062803.1 | Cupriavidus basilensis |
| 8 | 291276 | 291566 | - | NZ_CP054626.1 | Cupriavidus gilardii |
| 9 | 762565 | 762870 | - | NZ_CP017754.1 | Cupriavidus malaysiensis |
| 10 | 4876475 | 4876750 | - | NZ_CP040017.1 | Massilia umbonata |
| 11 | 7033035 | 7033310 | + | NZ_CP036401.1 | Massilia albidiflava |
| 12 | 6195093 | 6195368 | - | NZ_CP038034.1 | Achromobacter insolitus |
| 13 | 3681916 | 3682191 | - | NZ_CP046904.1 | Massilia flava |
| 14 | 142922 | 143194 | + | NC_010645.1 | Bordetella avium 197N |
| 15 | 281293 | 281553 | + | NC_007951.1 | Paraburkholderia xenovorans LB400 |
| 16 | 4002505 | 4002774 | - | NZ_CP011568.3 | Pandoraea thiooxydans |
| 17 | 4773386 | 4773658 | - | NZ_CP053986.1 | Achromobacter denitrificans |
| 18 | 2935696 | 2935974 | - | NZ_LT671418.1 | Herminiimonas arsenitoxidans |
| 19 | 1433463 | 1433735 | - | NZ_CP021395.1 | Bordetella hinzii |
| 20 | 3919301 | 3919567 | - | NZ_CP019038.1 | Massilia putida |
| 21 | 3633365 | 3633640 | + | NZ_CP018845.1 | Herbaspirillum robiniae |
| 22 | 5853444 | 5853692 | + | NZ_HG322949.1 | Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 |
| 23 | 1411312 | 1411587 | + | NZ_CP034464.1 | Undibacterium parvum |
| 24 | 188550 | 188825 | + | NC_018518.1 | Bordetella pertussis 18323 |
| 25 | 5554770 | 5555045 | - | NZ_CP016172.1 | Bordetella flabilis |
| 26 | 4266404 | 4266679 | + | NZ_AP019378.1 | Bordetella parapertussis |
| 27 | 4989007 | 4989282 | - | NZ_LR134326.1 | Bordetella bronchiseptica |
| 28 | 306398 | 306673 | - | NZ_CP028324.1 | Massilia armeniaca |
| 29 | 328673 | 328939 | - | NZ_CP024608.1 | Massilia violaceinigra |
| 30 | 4290378 | 4290650 | - | NZ_CP016440.1 | Bordetella pseudohinzii |
| 31 | 5690776 | 5691051 | - | NZ_CP016171.1 | Bordetella bronchialis |
| 32 | 5072252 | 5072527 | - | NC_010170.1 | Bordetella petrii |
| 33 | 340708 | 340977 | + | NZ_CP024934.1 | Paraburkholderia graminis |
| 34 | 3588809 | 3589081 | - | NZ_CP043146.1 | Bordetella holmesii |
| 35 | 2288108 | 2288380 | - | NZ_LR134302.1 | Achromobacter spanius |
| 36 | 908088 | 908348 | - | NZ_CP022989.1 | Paraburkholderia aromaticivorans |
| 37 | 255319 | 255591 | - | NZ_CP048832.1 | Janthinobacterium lividum |
| 38 | 4164415 | 4164711 | - | NZ_CP041185.1 | Janthinobacterium tructae |
| 39 | 269391 | 269687 | - | NZ_CP023422.1 | Janthinobacterium svalbardensis |
| 40 | 552327 | 552587 | + | NC_010681.1 | Paraburkholderia phytofirmans PsJN |
| 41 | 2462182 | 2462430 | + | NZ_CP031467.1 | Paraburkholderia caffeinilytica |
| 42 | 5654206 | 5654481 | - | NZ_CP037993.1 | Herbaspirillum huttiense |
| 43 | 5575311 | 5575586 | - | NZ_CP013737.1 | Herbaspirillum rubrisubalbicans M1 |
| 44 | 5200910 | 5201200 | - | NZ_CP013729.1 | Roseateles depolymerans |
| 45 | 539677 | 539949 | + | NZ_CP013480.3 | Pandoraea norimbergensis |
| 46 | 5471678 | 5471953 | - | NZ_CP011930.1 | Herbaspirillum seropedicae |
| 47 | 1092822 | 1093097 | - | NZ_CP022423.1 | Vitreoscilla filiformis |
| 48 | 4736684 | 4736959 | - | NZ_LT907988.1 | Orrella dioscoreae |
| 49 | 2321345 | 2321614 | - | NZ_CP066075.1 | Paraburkholderia ginsengisoli |
| 50 | 722847 | 723095 | + | NZ_CP040709.1 | Inhella inkyongensis |
| 51 | 2560733 | 2561008 | - | NZ_CP022987.1 | Pusillimonas thiosulfatoxidans |
| 52 | 236326 | 236574 | + | NC_010622.1 | Paraburkholderia phymatum STM815 |
| 53 | 509919 | 510167 | + | NZ_CP047385.1 | Pandoraea fibrosis |
| 54 | 5018001 | 5018273 | - | NZ_CP013481.2 | Pandoraea apista |
| 55 | 2568340 | 2568585 | - | NC_014722.1 | Mycetohabitans rhizoxinica HKI 454 |
| 56 | 117674 | 117937 | - | NZ_AP021884.1 | Sulfuriferula plumbiphila |
| 57 | 501704 | 501952 | + | NZ_CP011253.3 | Pandoraea oxalativorans |
| 58 | 474043 | 474315 | + | NC_023018.2 | Pandoraea pnomenusa |
| 59 | 1026168 | 1026455 | + | NZ_CP020121.1 | Comamonas kerstersii |
| 60 | 525734 | 526006 | + | NZ_CP010310.2 | Pandoraea pulmonicola |
| 61 | 261534 | 261782 | + | NZ_CP026111.1 | Paraburkholderia terrae |
| 62 | 299775 | 300023 | + | NZ_CP024941.1 | Paraburkholderia terricola |
| 63 | 5316899 | 5317186 | - | NZ_CP013232.1 | Collimonas fungivorans |
| 64 | 164433 | 164750 | + | NZ_CP021455.1 | Comamonas serinivorans |
| 65 | 5321116 | 5321409 | - | NZ_CP013236.1 | Collimonas pratensis |
| 66 | 359922 | 360203 | - | NZ_CP019239.1 | Rhodoferax saidenbachensis |
| 67 | 250774 | 251067 | + | NZ_CP046913.1 | Paraburkholderia acidisoli |
| 68 | 535418 | 535690 | + | NZ_CP010897.2 | Pandoraea vervacti |
| 69 | 4485079 | 4485366 | - | NZ_CP013235.1 | Collimonas arenae |
| 70 | 2202983 | 2203276 | - | NZ_CP031124.1 | Ephemeroptericola cinctiostellae |
| 71 | 1801119 | 1801367 | - | NZ_CP015958.1 | Paraburkholderia caribensis |
| 72 | 506761 | 507030 | + | NZ_LT906435.1 | Pandoraea sputorum |
| 73 | 2962114 | 2962419 | + | NZ_CP060790.1 | Acidovorax monticola |
| 74 | 181278 | 181589 | + | NZ_CP043575.1 | Comamonas koreensis |
| 75 | 103403 | 103705 | + | NZ_CP009238.1 | Basilea psittacipulmonis DSM 24701 |
| 76 | 670971 | 671249 | - | NZ_CP064338.1 | Schlegelella thermodepolymerans |
| 77 | 760736 | 761011 | + | NZ_CP003915.1 | Advenella mimigardefordensis DPN7 |
| 78 | 5219385 | 5219702 | - | NZ_CP065748.1 | Delftia lacustris |
| 79 | 5195278 | 5195595 | - | NZ_CP017420.1 | Delftia tsuruhatensis |
| 80 | 190843 | 191139 | - | NZ_CP060714.1 | Diaphorobacter ruginosibacter |
| 81 | 246093 | 246380 | + | NZ_CP046909.1 | Paraburkholderia acidiphila |
| 82 | 485412 | 485684 | + | NZ_CP011807.3 | Pandoraea faecigallinarum |
| 83 | 758768 | 759043 | + | NC_017964.1 | Advenella kashmirensis WT001 |
| 84 | 295593 | 295910 | - | NZ_CP021359.1 | Acidovorax carolinensis |
| 85 | 355621 | 355890 | + | NZ_CP029210.1 | Aquabacterium olei |
| 86 | 214716 | 215015 | + | NZ_CP049134.1 | Paraburkholderia tropica |
| 87 | 3736943 | 3737227 | - | NZ_CP035708.1 | Sphaerotilus natans subsp. sulfidivorans |
| 88 | 11976 | 12245 | - | NZ_AP014568.1 | Serpentinomonas raichei |
| 89 | 3210395 | 3210676 | - | NZ_CP009832.1 | Burkholderia multivorans ATCC BAA-247 |
| 90 | 467767 | 468042 | + | NZ_HG916765.1 | Castellaniella defragrans 65Phen |
| 91 | 338641 | 338889 | + | NC_008825.1 | Methylibium petroleiphilum PM1 |
| 92 | 404583 | 404879 | - | NZ_CP051298.1 | Alicycliphilus denitrificans |
| 93 | 355043 | 355339 | - | NC_015677.1 | Ramlibacter tataouinensis TTB310 |
| 94 | 187729 | 188022 | - | NZ_CP051461.1 | Polaromonas vacuolata |
| 95 | 2573164 | 2573433 | - | NZ_CP017561.1 | Paraburkholderia sprentiae WSM5005 |
| 96 | 241244 | 241543 | + | NZ_CP029640.1 | Paraburkholderia dokdonella |
| 97 | 2937481 | 2937729 | + | NZ_CP016278.1 | Diaphorobacter polyhydroxybutyrativorans |
| 98 | 470419 | 470703 | - | NC_015138.1 | Acidovorax avenae subsp. avenae ATCC 19860 |
| 99 | 5598355 | 5598648 | - | NZ_CP043046.1 | Pigmentiphaga aceris |
| 100 | 237327 | 237608 | + | NZ_CP009795.1 | Burkholderia dolosa AU0158 |
| 101 | 3208877 | 3209158 | - | NZ_CP013398.1 | Burkholderia seminalis |
| 102 | 250139 | 250450 | - | NC_008781.1 | Polaromonas naphthalenivorans CJ2 |
| 103 | 424560 | 424868 | + | NC_007651.1 | Burkholderia thailandensis E264 |
| 104 | 59499 | 59789 | - | NZ_CP029331.1 | Thauera hydrothermalis |
| 105 | 505058 | 505339 | + | NZ_CP027666.1 | Ottowia oryzae |
| 106 | 900163 | 900432 | + | NZ_CP020046.1 | Thiomonas intermedia |
| 107 | 391718 | 392002 | - | NC_008752.1 | Acidovorax citrulli AAC00-1 |
| 108 | 2637986 | 2638249 | - | NZ_AP018721.1 | Sulfuritortus calidifontis |
| 109 | 967807 | 968115 | - | NZ_CP011503.1 | Burkholderia pyrrocinia |
| 110 | 3281876 | 3282184 | - | NZ_CP013450.1 | Burkholderia cenocepacia |
| 111 | 4749061 | 4749336 | + | NC_010524.1 | Leptothrix cholodnii SP-6 |
| 112 | 296027 | 296335 | - | NZ_CP027792.1 | Pulveribacter suum |
| 113 | 1320717 | 1321025 | - | NZ_CP009555.1 | Burkholderia oklahomensis C6786 |
| 114 | 3358820 | 3359101 | - | NZ_CP045235.1 | Burkholderia cepacia |
| 115 | 3392010 | 3392291 | - | NC_007510.1 | Burkholderia lata |
| 116 | 3409064 | 3409372 | - | NZ_CP013459.1 | Burkholderia stagnalis |
| 117 | 3594223 | 3594531 | - | NZ_CP013414.1 | Burkholderia ubonensis |
| 118 | 4174524 | 4174817 | + | NZ_CP035503.1 | Rhodoferax sediminis |
| 119 | 3000878 | 3001150 | - | NZ_CP028901.1 | Algicoccus marinus |
| 120 | 1712537 | 1712785 | + | NZ_CP047165.1 | Pelistega ratti |
| 121 | 3374320 | 3374628 | - | NZ_CP020737.1 | Paraburkholderia acidophila |
| 122 | 3101770 | 3102042 | - | NZ_CP025682.1 | Azoarcus pumilus |
| 123 | 764481 | 764789 | + | NZ_CP009727.1 | Burkholderia mallei |
| 124 | 1317832 | 1318140 | - | NZ_CP008781.1 | Burkholderia pseudomallei |
| 125 | 483207 | 483515 | - | NZ_CP019240.1 | Rhodoferax antarcticus |
| 126 | 3259125 | 3259406 | - | NZ_CP013401.1 | Burkholderia metallica |
| 127 | 2968129 | 2968410 | - | NZ_CP014646.1 | Thauera humireducens |
| 128 | 5739955 | 5740230 | - | NZ_CP024645.1 | Rhizobacter gummiphilus |
| 129 | 422712 | 422996 | - | NZ_CP037867.1 | Hydrogenophaga pseudoflava |
| 130 | 1915189 | 1915458 | - | NZ_CP007501.1 | Polynucleobacter duraquae |
| 131 | 33697 | 33945 | + | NZ_CP010554.1 | Rugosibacter aromaticivorans |
| 132 | 2481796 | 2482092 | + | NZ_CP060783.1 | Diaphorobacter aerolatus |
| 133 | 3152696 | 3152980 | - | NZ_CP047650.1 | Xylophilus rhododendri |
| 134 | 4399803 | 4400072 | - | NC_007908.1 | Rhodoferax ferrireducens T118 |
| 135 | 554080 | 554388 | - | NZ_CP019236.1 | Rhodoferax koreense |
| 136 | 240412 | 240684 | - | NZ_CP018787.1 | Oxalobacter formigenes |
| 137 | 2585845 | 2586117 | - | NZ_CP059560.1 | Aromatoleum petrolei |
| 138 | 1405904 | 1406170 | - | NZ_LT615228.1 | Polynucleobacter necessarius |
| 139 | 2077601 | 2077849 | - | NZ_CP013119.1 | Alcaligenes faecalis |
| 140 | 243988 | 244236 | + | NZ_AP012547.1 | Sulfuritalea hydrogenivorans sk43H |
| 141 | 510805 | 511080 | - | NZ_AP021881.1 | Sulfuriferula nivalis |
| 142 | 3888852 | 3889160 | - | NZ_CP002580.1 | Burkholderia plantarii |
| 143 | 1818814 | 1819086 | + | NC_006513.1 | Aromatoleum aromaticum EbN1 |
| 144 | 802661 | 802930 | + | NZ_CP064781.1 | Azospira restricta |
| 145 | 538561 | 538884 | - | NC_008786.1 | Verminephrobacter eiseniae EF01-2 |
| 146 | 215063 | 215344 | + | NZ_CP016210.1 | Azoarcus olearius |
| 147 | 3861919 | 3862185 | + | NZ_CP054840.1 | Acidovorax antarcticus |
| 148 | 1512091 | 1512360 | - | NZ_CP059567.1 | Neisseria shayeganii |
| 149 | 2674228 | 2674494 | + | NC_012969.1 | Methylovorus glucosetrophus SIP3-4 |
| 150 | 1506035 | 1506301 | - | NZ_CP030086.1 | Polynucleobacter paneuropaeus |
| 151 | 3440124 | 3440387 | + | NZ_LR778301.1 | Denitratisoma oestradiolicum |
| 152 | 1967522 | 1967794 | + | NZ_CP059467.1 | Aromatoleum bremense |
| 153 | 1987961 | 1988269 | - | NZ_CP035900.1 | Burkholderia glumae |
| 154 | 166089 | 166373 | + | NZ_CP028339.1 | Thauera aromatica K172 |
| 155 | 145138 | 145410 | + | NZ_CP022579.1 | Oryzomicrobium terrae |
| 156 | 610133 | 610435 | + | NZ_AP022345.1 | Fluviibacter phosphoraccumulans |
| 157 | 1881259 | 1881522 | - | NZ_CP023276.1 | Polynucleobacter difficilis |
| 158 | 2767183 | 2767431 | - | NZ_AP018150.1 | Mycoavidus cysteinexigens |
| 159 | 1265743 | 1265991 | + | NZ_CP027669.1 | Simplicispira suum |
| 160 | 305944 | 306213 | + | NZ_AP018738.1 | Ferriphaselus amnicola |
| 161 | 727568 | 727837 | - | NC_013959.1 | Sideroxydans lithotrophicus ES-1 |
| 162 | 38577 | 38843 | + | NZ_CP013341.1 | Nitrosomonas ureae |
| 163 | 483516 | 483788 | + | NZ_CP007446.1 | Snodgrassella alvi wkB2 |
| 164 | 160692 | 160976 | + | NZ_CP018839.1 | Thauera chlorobenzoica |
| 165 | 684632 | 684919 | - | NZ_CP017476.1 | Hydrogenophaga crassostreae |
| 166 | 2677382 | 2677675 | + | NC_007947.1 | Methylobacillus flagellatus KT |
| 167 | 1622098 | 1622361 | + | NC_004757.1 | Nitrosomonas europaea ATCC 19718 |
| 168 | 1724190 | 1724453 | - | NZ_AP019755.1 | Nitrosomonas stercoris |
| 169 | 2034532 | 2034798 | - | NC_009379.1 | Polynucleobacter asymbioticus QLW-P1DMWA-1 |
| 170 | 19864 | 20139 | - | NZ_AP014569.1 | Serpentinomonas mccroryi |
| 171 | 776874 | 777137 | - | NC_008344.1 | Nitrosomonas eutropha C91 |
| 172 | 4398659 | 4398964 | + | NZ_CP053069.1 | Usitatibacter rugosus |
| 173 | 2505923 | 2506189 | - | NZ_CP011451.1 | Nitrosomonas communis |
| 174 | 1043245 | 1043514 | + | NZ_CP019448.1 | Simonsiella muelleri ATCC 29453 |
| 175 | 508416 | 508685 | + | NZ_CP031252.1 | Neisseria elongata |
| 176 | 57909 | 58208 | + | NZ_CP021060.1 | Taylorella equigenitalis |
| 177 | 2445144 | 2445425 | + | NC_012968.1 | Methylotenera mobilis JLW8 |
| 178 | 1545026 | 1545292 | - | NZ_CP041730.1 | Chitinimonas arctica |
| 179 | 646879 | 647148 | - | NZ_CP059563.1 | Conchiformibius steedae |
| 180 | 57926 | 58174 | + | NC_016043.1 | Taylorella asinigenitalis MCE3 |
| 181 | 1151407 | 1151673 | + | NZ_CP014476.1 | Methylomonas denitrificans |
| 182 | 1409652 | 1409921 | + | NZ_CP059571.1 | Neisseria bacilliformis |
| 183 | 294793 | 295059 | - | NZ_CP059569.1 | Kingella oralis |
| 184 | 893831 | 894079 | - | NZ_LR134516.1 | Neisseria animaloris |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP068285.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00768.22 | 0.64 | 118 | 949.0 | same-strand | D-alanyl-D-alanine carboxypeptidase |
| 2 | PF07943.15 | 0.64 | 118 | 949.0 | same-strand | Penicillin-binding protein 5, C-terminal domain |
| 3 | PF04055.23 | 0.9 | 165 | 839.0 | same-strand | Radical SAM superfamily |
++ More..