Result : Q8Y183
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Probable tautomerase RSc0807 (EC 5.3.2.-) |
| NCBI Accession ID | AL646052.1 |
| Organism | Ralstonia solanacearum (strain GMI1000) (Pseudomonas solanacearum) |
| Left | 854857 |
| Right | 855045 |
| Strand | + |
| Nucleotide Sequence | ATGCCGACATTCCACATCGAGATGTTCGAGGGCCGCAGCGCCGACCAGAAGCGCAAGCTGGTCGAGGAGGTCACGCGCGTCACCTGCGAGACCCTGGGCTGCGCGCCCGGCGCGGTCGACATCATCATCGCCGAGGTCAAGCGCGAGAACTGGGCCACCGGCGGCGTGCTCTGGTCCGAGCAGAAGTAA |
| Sequence | MPTFHIEMFEGRSADQKRKLVEEVTRVTCETLGCAPGAVDIIIAEVKRENWATGGVLWSEQK |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl00235. Profile Description: N/A. This family includes the enzyme 4-oxalocrotonate tautomerase, which catalyzes the ketonisation of 2-hydroxymuconate to 2-oxo-3-hexenedioate. |
| Pubmed ID | 11823852 |
| Domain | CDD:412246 |
| Functional Category | Others |
| Uniprot ID | Q8Y183 |
| ORF Length (Amino Acid) | 62 |
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| Conservation Analysis |
No. of Species: 89
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 381074 | 381262 | - | NZ_CP068286.1 | Ralstonia syzygii subsp. celebesensis |
| 2 | 2909370 | 2909558 | + | NZ_CP012943.1 | Ralstonia solanacearum |
| 3 | 2716158 | 2716346 | + | NZ_CP011257.1 | Ralstonia mannitolilytica |
| 4 | 2609170 | 2609358 | - | NZ_CP016022.1 | Ralstonia insidiosa |
| 5 | 3626243 | 3626431 | + | NZ_CP017754.1 | Cupriavidus malaysiensis |
| 6 | 2290680 | 2290868 | - | NZ_CP054626.1 | Cupriavidus gilardii |
| 7 | 2696330 | 2696518 | - | NZ_CP032519.1 | Cupriavidus oxalaticus |
| 8 | 3290515 | 3290703 | - | NZ_CP062803.1 | Cupriavidus basilensis |
| 9 | 2987315 | 2987503 | - | NZ_CP039287.1 | Cupriavidus necator H16 |
| 10 | 3948890 | 3949081 | + | NZ_CP019239.1 | Rhodoferax saidenbachensis |
| 11 | 1936131 | 1936319 | + | NZ_CP013400.1 | Burkholderia seminalis |
| 12 | 1280674 | 1280862 | - | NC_007511.1 | Burkholderia lata |
| 13 | 2316853 | 2317041 | - | NZ_CP011504.1 | Burkholderia pyrrocinia |
| 14 | 1898988 | 1899176 | + | NZ_CP013461.1 | Burkholderia stagnalis |
| 15 | 1938289 | 1938477 | + | NZ_CP013452.1 | Burkholderia cenocepacia |
| 16 | 1626196 | 1626384 | + | NZ_CP009831.1 | Burkholderia multivorans ATCC BAA-247 |
| 17 | 247333 | 247518 | + | NC_021289.1 | Caballeronia insecticola |
| 18 | 2140706 | 2140894 | + | NZ_CP020738.1 | Paraburkholderia acidophila |
| 19 | 569000 | 569188 | - | NZ_CP045236.1 | Burkholderia cepacia |
| 20 | 1827536 | 1827724 | + | NZ_CP013416.1 | Burkholderia ubonensis |
| 21 | 3118091 | 3118276 | - | NZ_CP011568.3 | Pandoraea thiooxydans |
| 22 | 1260618 | 1260812 | - | NZ_CP002581.1 | Burkholderia plantarii |
| 23 | 726292 | 726480 | - | NZ_CP009793.1 | Burkholderia dolosa AU0158 |
| 24 | 1848838 | 1849026 | + | NZ_CP013403.1 | Burkholderia metallica |
| 25 | 1855814 | 1856005 | + | NZ_CP031466.1 | Paraburkholderia caffeinilytica |
| 26 | 1764694 | 1764882 | + | NZ_CP014646.1 | Thauera humireducens |
| 27 | 77464 | 77655 | + | NZ_CP024942.1 | Paraburkholderia terricola |
| 28 | 506098 | 506286 | - | NC_015138.1 | Acidovorax avenae subsp. avenae ATCC 19860 |
| 29 | 358523 | 358711 | + | NZ_CP021455.1 | Comamonas serinivorans |
| 30 | 1710634 | 1710825 | + | NZ_CP024935.1 | Paraburkholderia graminis |
| 31 | 4577009 | 4577197 | + | NZ_CP065748.1 | Delftia lacustris |
| 32 | 4618695 | 4618883 | + | NZ_CP017420.1 | Delftia tsuruhatensis |
| 33 | 1001871 | 1002059 | - | NZ_CP066076.1 | Paraburkholderia ginsengisoli |
| 34 | 435831 | 436019 | - | NC_008752.1 | Acidovorax citrulli AAC00-1 |
| 35 | 2462942 | 2463130 | - | NZ_CP015959.1 | Paraburkholderia caribensis |
| 36 | 220041 | 220226 | - | NZ_CP022990.1 | Paraburkholderia aromaticivorans |
| 37 | 209029 | 209217 | - | NZ_CP054840.1 | Acidovorax antarcticus |
| 38 | 1746963 | 1747157 | + | NZ_CP013480.3 | Pandoraea norimbergensis |
| 39 | 3691877 | 3692065 | - | NZ_CP010897.2 | Pandoraea vervacti |
| 40 | 2802760 | 2802948 | + | NZ_CP060790.1 | Acidovorax monticola |
| 41 | 1947286 | 1947477 | - | NC_007908.1 | Rhodoferax ferrireducens T118 |
| 42 | 1230611 | 1230799 | + | NZ_CP027669.1 | Simplicispira suum |
| 43 | 291511 | 291699 | - | NZ_CP060714.1 | Diaphorobacter ruginosibacter |
| 44 | 2907297 | 2907485 | + | NZ_CP016278.1 | Diaphorobacter polyhydroxybutyrativorans |
| 45 | 2623752 | 2623940 | + | NZ_CP047650.1 | Xylophilus rhododendri |
| 46 | 1076622 | 1076807 | - | NZ_CP026112.1 | Paraburkholderia terrae |
| 47 | 4470299 | 4470481 | + | NZ_CP013232.1 | Collimonas fungivorans |
| 48 | 4183279 | 4183464 | - | NZ_CP013232.1 | Collimonas fungivorans |
| 49 | 1821920 | 1822108 | + | NC_008786.1 | Verminephrobacter eiseniae EF01-2 |
| 50 | 2441324 | 2441512 | + | NZ_CP060783.1 | Diaphorobacter aerolatus |
| 51 | 3840002 | 3840196 | - | NZ_CP010310.2 | Pandoraea pulmonicola |
| 52 | 4337187 | 4337375 | + | NZ_CP051298.1 | Alicycliphilus denitrificans |
| 53 | 5459116 | 5459313 | - | NZ_CP019236.1 | Rhodoferax koreense |
| 54 | 3459195 | 3459389 | - | NC_023018.2 | Pandoraea pnomenusa |
| 55 | 4450621 | 4450803 | + | NZ_CP013236.1 | Collimonas pratensis |
| 56 | 3117362 | 3117547 | - | NZ_CP013236.1 | Collimonas pratensis |
| 57 | 996956 | 997141 | - | NC_010676.1 | Paraburkholderia phytofirmans PsJN |
| 58 | 314311 | 314499 | - | NZ_CP027792.1 | Pulveribacter suum |
| 59 | 3976150 | 3976341 | + | NC_008781.1 | Polaromonas naphthalenivorans CJ2 |
| 60 | 307201 | 307386 | + | NC_010623.1 | Paraburkholderia phymatum STM815 |
| 61 | 5432172 | 5432354 | - | NZ_CP018845.1 | Herbaspirillum robiniae |
| 62 | 8115 | 8297 | - | NZ_CP018845.1 | Herbaspirillum robiniae |
| 63 | 3530137 | 3530319 | + | NZ_CP013235.1 | Collimonas arenae |
| 64 | 1372289 | 1372474 | + | NZ_CP013235.1 | Collimonas arenae |
| 65 | 3334146 | 3334334 | - | NZ_CP011807.3 | Pandoraea faecigallinarum |
| 66 | 1748975 | 1749169 | + | NZ_LT906435.1 | Pandoraea sputorum |
| 67 | 3730640 | 3730828 | + | NZ_CP021359.1 | Acidovorax carolinensis |
| 68 | 625016 | 625204 | - | NZ_CP023276.1 | Polynucleobacter difficilis |
| 69 | 3731539 | 3731727 | + | NZ_HG916765.1 | Castellaniella defragrans 65Phen |
| 70 | 248887 | 249090 | - | NZ_CP035503.1 | Rhodoferax sediminis |
| 71 | 362885 | 363073 | - | NZ_CP046910.1 | Paraburkholderia acidiphila |
| 72 | 2682087 | 2682281 | + | NZ_CP047385.1 | Pandoraea fibrosis |
| 73 | 327493 | 327675 | - | NZ_CP018787.1 | Oxalobacter formigenes |
| 74 | 3709968 | 3710162 | - | NZ_CP011253.3 | Pandoraea oxalativorans |
| 75 | 1466659 | 1466847 | - | NZ_CP046914.1 | Paraburkholderia acidisoli |
| 76 | 916435 | 916623 | + | NZ_CP049135.1 | Paraburkholderia tropica |
| 77 | 3676965 | 3677159 | - | NZ_CP013481.2 | Pandoraea apista |
| 78 | 4778061 | 4778246 | - | NZ_CP019038.1 | Massilia putida |
| 79 | 3508107 | 3508298 | + | NZ_CP051461.1 | Polaromonas vacuolata |
| 80 | 1497935 | 1498120 | + | NZ_CP040017.1 | Massilia umbonata |
| 81 | 3375038 | 3375223 | + | NZ_CP036401.1 | Massilia albidiflava |
| 82 | 2383412 | 2383597 | - | NZ_LT671418.1 | Herminiimonas arsenitoxidans |
| 83 | 3062759 | 3062944 | + | NZ_CP031222.1 | Aquirhabdus parva |
| 84 | 1339974 | 1340162 | - | NC_015677.1 | Ramlibacter tataouinensis TTB310 |
| 85 | 1024635 | 1024823 | + | NZ_CP029829.1 | Azospirillum ramasamyi |
| 86 | 1675062 | 1675250 | - | NZ_CP054619.1 | Azospirillum oryzae |
| 87 | 1463187 | 1463378 | - | NZ_CP020046.1 | Thiomonas intermedia |
| 88 | 4884749 | 4884940 | - | NZ_CP013729.1 | Roseateles depolymerans |
| 89 | 3823190 | 3823372 | - | NZ_CP067057.1 | Rahnella aceris |
| 90 | 2596303 | 2596488 | - | NC_007650.1 | Burkholderia thailandensis E264 |
| 91 | 735483 | 735668 | - | NC_020062.1 | Rhizobium tropici CIAT 899 |
| 92 | 1041321 | 1041530 | - | NC_013173.1 | Desulfomicrobium baculatum DSM 4028 |
| 93 | 648927 | 649115 | + | NC_007503.1 | Carboxydothermus hydrogenoformans Z-2901 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP068286.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00596.23 | 0.61 | 54 | 54 | same-strand | Class II Aldolase and Adducin N-terminal domain |
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