Result : Q8XJD9
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Exodeoxyribonuclease 7 small subunit (EC 3.1.11.6) (Exodeoxyribonuclease VII small subunit) (Exonuclease VII small subunit) |
| NCBI Accession ID | BA000016.3 |
| Organism | Clostridium perfringens (strain 13 / Type A) |
| Left | 2099966 |
| Right | 2100193 |
| Strand | - |
| Nucleotide Sequence | ATGGCTAGAAAAGAAACTAATTATGAAAGTATGGTTAGTGAATTAAATGAAATCGTAAAGCAACTGGAAAATGGAGATTTGACCTTAGAAGAGTCTATAAAAAGCTATGAAAATGGAGTTAAAATAGTAAATAAACTATATAAGAAGCTAAGCACTTTAGAAGGCAAAATAAAGGTTGTTGAAGATGAAAAAGAGGAAGACTTTGGAGGATACAGCAATGAATATTAA |
| Sequence | MARKETNYESMVSELNEIVKQLENGDLTLEESIKSYENGVKIVNKLYKKLSTLEGKIKVVEDEKEEDFGGYSNEY |
| Source of smORF | Swiss-Prot |
| Function | Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides. {ECO:0000250}. |
| Pubmed ID | 11792842 |
| Domain | CDD:412547 |
| Functional Category | Others |
| Uniprot ID | Q8XJD9 |
| ORF Length (Amino Acid) | 75 |
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| Conservation Analysis |
No. of Species: 22
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2314996 | 2315223 | - | NC_008261.1 | Clostridium perfringens ATCC 13124 |
| 2 | 2301816 | 2302040 | - | NZ_CP030775.1 | Clostridium butyricum |
| 3 | 2087365 | 2087580 | - | NZ_CP011663.1 | Clostridium sporogenes |
| 4 | 2038894 | 2039118 | - | NZ_CP017253.2 | Clostridium taeniosporum |
| 5 | 3460594 | 3460818 | + | NZ_CP012395.1 | Clostridium autoethanogenum DSM 10061 |
| 6 | 1215220 | 1215444 | + | NC_014328.1 | Clostridium ljungdahlii DSM 13528 |
| 7 | 1847865 | 1848089 | + | NZ_CP043998.1 | Clostridium diolis |
| 8 | 990987 | 991205 | + | NZ_CP020953.1 | Clostridium drakei |
| 9 | 3331329 | 3331547 | - | NZ_CP009933.1 | Clostridium scatologenes |
| 10 | 3016649 | 3016873 | - | NC_022571.1 | Clostridium saccharobutylicum DSM 13864 |
| 11 | 2016681 | 2016866 | - | NZ_CP028842.1 | Clostridium botulinum |
| 12 | 5682042 | 5682260 | + | NZ_CP011803.1 | Clostridium carboxidivorans P7 |
| 13 | 2045234 | 2045425 | + | NZ_CP013019.1 | Clostridium pasteurianum |
| 14 | 2972611 | 2972835 | + | NC_020291.1 | Clostridium saccharoperbutylacetonicum N1-4(HMT) |
| 15 | 1861918 | 1862127 | - | NZ_CP032416.1 | Clostridium fermenticellae |
| 16 | 1534505 | 1534729 | + | NZ_CP040924.1 | Clostridium thermarum |
| 17 | 1268104 | 1268322 | + | NC_011837.1 | Clostridium kluyveri NBRC 12016 |
| 18 | 2314242 | 2314460 | + | NC_014393.1 | Clostridium cellulovorans 743B |
| 19 | 3153709 | 3153930 | + | NZ_CP071376.1 | Clostridium gasigenes |
| 20 | 235486 | 235689 | + | NZ_CP026606.1 | Methanococcus maripaludis |
| 21 | 1554921 | 1555142 | - | NZ_CP027286.1 | Clostridium chauvoei |
| 22 | 3266553 | 3266774 | + | NZ_CP023671.1 | Clostridium septicum |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_008261.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01316.23 | 0.64 | 14 | 4519.5 | same-strand | Arginine repressor, DNA binding domain |
| 2 | PF02863.20 | 0.64 | 14 | 4519.5 | same-strand | Arginine repressor, C-terminal domain |
| 3 | PF20143.1 | 0.95 | 21 | 3695 | same-strand | ATP-NAD kinase C-terminal domain |
| 4 | PF01728.21 | 0.95 | 21 | 2864 | same-strand | FtsJ-like methyltransferase |
| 5 | PF01479.27 | 0.95 | 21 | 2864 | same-strand | S4 domain |
| 6 | PF13292.8 | 0.95 | 21 | 969 | same-strand | 1-deoxy-D-xylulose-5-phosphate synthase |
| 7 | PF02779.26 | 0.95 | 21 | 969 | same-strand | Transketolase, pyrimidine binding domain |
| 8 | PF02780.22 | 0.95 | 21 | 969 | same-strand | Transketolase, C-terminal domain |
| 9 | PF00348.19 | 0.95 | 21 | 3 | same-strand | Polyprenyl synthetase |
| 10 | PF13742.8 | 1.0 | 22 | 16.0 | same-strand | OB-fold nucleic acid binding domain |
| 11 | PF01336.27 | 1.0 | 22 | 16.0 | same-strand | OB-fold nucleic acid binding domain |
| 12 | PF01029.20 | 0.95 | 21 | 2055 | same-strand | NusB family |
| 13 | PF03780.15 | 0.95 | 21 | 2590 | same-strand | Asp23 family, cell envelope-related function |
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