Result : Q8XH43
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 30S ribosomal protein S6 |
| NCBI Accession ID | |
| Organism | Clostridium perfringens (strain 13 / Type A) |
| Left | |
| Right | |
| Strand | |
| Nucleotide Sequence | |
| Sequence | MRKYETIFVAHPSLDEEAVKALIEKFKGVIENGNGTVDNVDFWGKRKLAYEIAKVNEGYYTLINFTANPELPKELDRVFGITDGIIRHIIVKEEQ |
| Source of smORF | Swiss-Prot |
| Function | Binds together with S18 to 16S ribosomal RNA. {ECO:0000255|HAMAP-Rule:MF_00360}. |
| Pubmed ID | 11792842 |
| Domain | CDD:412366 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | Q8XH43 |
| ORF Length (Amino Acid) | 95 |
++ More..
| Conservation Analysis |
No. of Species: 92
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3241293 | 3241580 | - | NC_008261.1 | Clostridium perfringens ATCC 13124 |
| 2 | 3790763 | 3791050 | - | NZ_CP040924.1 | Clostridium thermarum |
| 3 | 2855763 | 2856050 | - | NZ_CP016786.1 | Clostridium isatidis |
| 4 | 1268329 | 1268616 | + | NZ_CP071376.1 | Clostridium gasigenes |
| 5 | 3057599 | 3057886 | - | NZ_CP014170.1 | Clostridium tyrobutyricum |
| 6 | 5924749 | 5925036 | - | NZ_CP043998.1 | Clostridium diolis |
| 7 | 6515547 | 6515834 | - | NC_020291.1 | Clostridium saccharoperbutylacetonicum N1-4(HMT) |
| 8 | 3763970 | 3764257 | + | NZ_CP030775.1 | Clostridium butyricum |
| 9 | 1711861 | 1712148 | - | NZ_CP023671.1 | Clostridium septicum |
| 10 | 2868910 | 2869197 | - | NZ_CP027286.1 | Clostridium chauvoei |
| 11 | 5093132 | 5093419 | - | NC_022571.1 | Clostridium saccharobutylicum DSM 13864 |
| 12 | 3249751 | 3250038 | - | NZ_CP017253.2 | Clostridium taeniosporum |
| 13 | 4596975 | 4597262 | - | NZ_CP011803.1 | Clostridium carboxidivorans P7 |
| 14 | 5448550 | 5448837 | - | NZ_CP020953.1 | Clostridium drakei |
| 15 | 4472756 | 4473043 | + | NZ_CP009933.1 | Clostridium scatologenes |
| 16 | 2248137 | 2248424 | - | NZ_CP012395.1 | Clostridium autoethanogenum DSM 10061 |
| 17 | 4615759 | 4616046 | - | NC_014328.1 | Clostridium ljungdahlii DSM 13528 |
| 18 | 4337010 | 4337297 | - | NZ_CP013019.1 | Clostridium pasteurianum |
| 19 | 3077037 | 3077324 | - | NZ_CP014204.2 | Clostridium baratii |
| 20 | 4745668 | 4745955 | - | NZ_CP015756.1 | Clostridium estertheticum subsp. estertheticum |
| 21 | 2421944 | 2422228 | - | NZ_LT906477.1 | Clostridium cochlearium |
| 22 | 5245517 | 5245804 | - | NC_014393.1 | Clostridium cellulovorans 743B |
| 23 | 2805764 | 2806051 | - | NZ_CP032416.1 | Clostridium fermenticellae |
| 24 | 3880961 | 3881248 | - | NC_011837.1 | Clostridium kluyveri NBRC 12016 |
| 25 | 4125501 | 4125785 | - | NZ_CP011663.1 | Clostridium sporogenes |
| 26 | 2905821 | 2906108 | - | NZ_HG917868.1 | Clostridium bornimense |
| 27 | 3842161 | 3842445 | - | NZ_CP028842.1 | Clostridium botulinum |
| 28 | 193478 | 193765 | + | NZ_CP014176.1 | Clostridium argentinense |
| 29 | 11787 | 12074 | + | NC_008593.1 | Clostridium novyi NT |
| 30 | 3930678 | 3930965 | - | NC_015687.1 | Clostridium acetobutylicum DSM 1731 |
| 31 | 2724951 | 2725238 | - | NZ_LR590481.1 | Hathewaya histolytica |
| 32 | 2768102 | 2768392 | - | NC_015520.1 | Mahella australiensis 50-1 BON |
| 33 | 1071004 | 1071291 | + | NZ_CP059066.1 | Koleobacter methoxysyntrophicus |
| 34 | 20856 | 21143 | + | NZ_CP047602.1 | Thermoanaerobacterium aotearoense |
| 35 | 3362022 | 3362267 | - | NZ_CP016502.1 | Acetivibrio thermocellus DSM 2360 |
| 36 | 2223317 | 2223607 | - | NC_012034.1 | Caldicellulosiruptor bescii DSM 6725 |
| 37 | 653737 | 654027 | + | NC_014720.1 | Caldicellulosiruptor kronotskyensis 2002 |
| 38 | 2766057 | 2766344 | - | NC_014410.1 | Thermoanaerobacterium thermosaccharolyticum DSM 571 |
| 39 | 131281 | 131565 | + | NZ_CP061336.1 | Ruminiclostridium herbifermentans |
| 40 | 2514721 | 2515008 | - | NC_015555.1 | Thermoanaerobacterium xylanolyticum LX-11 |
| 41 | 1621518 | 1621802 | + | NZ_CP030777.1 | Faecalibacterium prausnitzii |
| 42 | 1961119 | 1961409 | - | NC_015949.1 | Caldicellulosiruptor lactoaceticus 6A |
| 43 | 530733 | 531023 | + | NC_014721.1 | Caldicellulosiruptor kristjanssonii I77R1B |
| 44 | 2028106 | 2028396 | - | NC_014392.1 | Caldicellulosiruptor obsidiansis OB47 |
| 45 | 708713 | 709003 | + | NC_014652.1 | Caldicellulosiruptor hydrothermalis 108 |
| 46 | 34122 | 34406 | + | NZ_CP020559.1 | Clostridium formicaceticum |
| 47 | 797746 | 798012 | + | NZ_CP034791.1 | Caldicellulosiruptor changbaiensis |
| 48 | 3008553 | 3008840 | - | NC_018664.1 | Gottschalkia acidurici 9a |
| 49 | 39789 | 40073 | + | NC_009922.1 | Alkaliphilus oremlandii OhILAs |
| 50 | 4532488 | 4532775 | - | NC_013216.1 | Desulfofarcimen acetoxidans DSM 771 |
| 51 | 1503689 | 1503955 | + | NC_009437.1 | Caldicellulosiruptor saccharolyticus DSM 8903 |
| 52 | 40976 | 41260 | + | NZ_CP068564.1 | Keratinibaculum paraultunense |
| 53 | 2121101 | 2121388 | - | NC_013385.1 | Ammonifex degensii KC4 |
| 54 | 40870 | 41154 | + | NZ_CP035130.1 | Gudongella oleilytica |
| 55 | 2671360 | 2671647 | - | NC_003869.1 | Caldanaerobacter subterraneus subsp. tengcongensis MB4 |
| 56 | 2947957 | 2948244 | - | NZ_CP016379.1 | Anoxybacter fermentans |
| 57 | 133839 | 134129 | + | NC_020134.1 | Thermoclostridium stercorarium subsp. stercorarium DSM 8532 |
| 58 | 6477769 | 6478053 | - | NZ_CP034346.1 | Paenibacillus lutimineralis |
| 59 | 3246272 | 3246556 | + | NZ_CP035492.1 | Paenibacillus protaetiae |
| 60 | 238053 | 238340 | + | NZ_CP025197.1 | Acetivibrio saccincola |
| 61 | 2700035 | 2700322 | - | NC_014614.1 | Acetoanaerobium sticklandii |
| 62 | 30652 | 30936 | + | NZ_CP009687.1 | Clostridium aceticum |
| 63 | 1882722 | 1883012 | - | NC_014657.1 | Caldicellulosiruptor owensensis OL |
| 64 | 2741017 | 2741304 | - | NC_015519.1 | Tepidanaerobacter acetatoxydans Re1 |
| 65 | 1916657 | 1916944 | - | NZ_LT906446.1 | Megamonas hypermegale |
| 66 | 343202 | 343495 | + | NZ_LT821227.1 | Phoenicibacter congonensis |
| 67 | 4253193 | 4253480 | - | NZ_CP019659.1 | Paenibacillus larvae subsp. larvae |
| 68 | 1618952 | 1619224 | + | NZ_CP048436.1 | Flavonifractor plautii |
| 69 | 66038 | 66328 | + | NC_018870.1 | Thermacetogenium phaeum DSM 12270 |
| 70 | 2911607 | 2911894 | + | NZ_CP017269.1 | Geosporobacter ferrireducens |
| 71 | 43948 | 44232 | + | NC_009633.1 | Alkaliphilus metalliredigens QYMF |
| 72 | 31390 | 31683 | + | NC_013204.1 | Eggerthella lenta DSM 2243 |
| 73 | 4795707 | 4795991 | - | NZ_CP036259.1 | Sporomusa termitida |
| 74 | 4294942 | 4295226 | + | NZ_CP013652.1 | Paenibacillus naphthalenovorans |
| 75 | 2088655 | 2088948 | - | NC_015389.1 | Coriobacterium glomerans PW2 |
| 76 | 5347241 | 5347525 | + | NZ_AP019308.1 | Paenibacillus baekrokdamisoli |
| 77 | 162512 | 162796 | + | NZ_CP036523.1 | Peptacetobacter hiranonis |
| 78 | 8803755 | 8804039 | - | NC_017672.3 | Paenibacillus mucilaginosus K02 |
| 79 | 2980704 | 2980997 | - | NZ_LR134379.1 | Slackia heliotrinireducens |
| 80 | 2528769 | 2529059 | - | NZ_CP041217.1 | Saccharibacillus brassicae |
| 81 | 1316357 | 1316650 | - | NC_013170.1 | Cryptobacterium curtum DSM 15641 |
| 82 | 383294 | 383578 | + | NZ_AP022321.1 | Veillonella nakazawae |
| 83 | 359505 | 359789 | + | NZ_LR134375.1 | Veillonella dispar |
| 84 | 422679 | 422963 | + | NZ_LR778174.1 | Veillonella parvula |
| 85 | 3641420 | 3641704 | + | NZ_CP048286.1 | Paenibacillus rhizovicinus |
| 86 | 165840 | 166124 | - | NZ_CP048209.1 | Paenibacillus lycopersici |
| 87 | 4772461 | 4772748 | - | NC_016627.1 | Acetivibrio clariflavus DSM 19732 |
| 88 | 2002251 | 2002517 | - | NZ_CP034413.2 | Dysosmobacter welbionis |
| 89 | 1235093 | 1235389 | - | NC_016048.1 | Oscillibacter valericigenes Sjm18-20 |
| 90 | 4304258 | 4304545 | - | NC_014624.2 | Eubacterium callanderi |
| 91 | 676032 | 676319 | - | NZ_CP019962.1 | Eubacterium limosum |
| 92 | 2765931 | 2766218 | - | NZ_CP029487.1 | Eubacterium maltosivorans |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_008261.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01084.22 | 0.99 | 91 | 492 | same-strand | Ribosomal protein S18 |
| 2 | PF00436.27 | 1.0 | 92 | 17.0 | same-strand | Single-strand binding protein family |
| 3 | PF06107.13 | 0.61 | 56 | 118.0 | same-strand | Bacterial protein of unknown function (DUF951) |
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