Result : Q8UHD5
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Exodeoxyribonuclease 7 small subunit (EC 3.1.11.6) (Exodeoxyribonuclease VII small subunit) (Exonuclease VII small subunit) |
| NCBI Accession ID | |
| Organism | Agrobacterium fabrum (strain C58 / ATCC 33970) (Agrobacterium tumefaciens (strain C58)) |
| Left | |
| Right | |
| Strand | |
| Nucleotide Sequence | |
| Sequence | MNMTENANTADVSGYSFEKAVAELESIVARLERGDVALDESIAIYERGEALKKHCETLLNAAEKRIEKIRLDRAGKPQGVEPLDGE |
| Source of smORF | Swiss-Prot |
| Function | Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides. {ECO:0000255|HAMAP-Rule:MF_00337}. |
| Pubmed ID | 11743193 11743194 |
| Domain | CDD:412547 |
| Functional Category | Others |
| Uniprot ID | Q8UHD5 |
| ORF Length (Amino Acid) | 86 |
++ More..
| Conservation Analysis |
No. of Species: 212
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 400744 | 401004 | - | NZ_CP053856.1 | Rhizobium pusense |
| 2 | 396981 | 397241 | - | NZ_CP061003.1 | Agrobacterium tumefaciens |
| 3 | 1341848 | 1342108 | + | NZ_CP048632.1 | Rhizobium oryzihabitans |
| 4 | 805216 | 805470 | - | NZ_LR723670.1 | Pseudorhizobium flavum |
| 5 | 511305 | 511559 | - | NZ_FO082820.1 | Pseudorhizobium banfieldiae |
| 6 | 542815 | 543042 | - | NZ_HG938353.1 | Neorhizobium galegae bv. orientalis str. HAMBI 540 |
| 7 | 2610972 | 2611232 | + | NZ_CP059896.1 | Ciceribacter thiooxidans |
| 8 | 244393 | 244653 | + | NZ_CP049241.1 | Rhizobium pseudoryzae |
| 9 | 1143511 | 1143768 | - | NZ_CP032694.1 | Rhizobium jaguaris |
| 10 | 917806 | 918063 | - | NC_020059.1 | Rhizobium tropici CIAT 899 |
| 11 | 944538 | 944789 | - | NZ_CP071612.1 | Rhizobium bangladeshense |
| 12 | 79895 | 80155 | + | NZ_CP049250.1 | Rhizobium rhizoryzae |
| 13 | 940729 | 940986 | - | NZ_CP020906.1 | Rhizobium etli |
| 14 | 3372785 | 3373042 | + | NZ_CP054027.1 | Rhizobium hidalgonense |
| 15 | 1020702 | 1020959 | - | NZ_CP071604.1 | Rhizobium binae |
| 16 | 2776568 | 2776825 | - | NZ_CP071454.1 | Rhizobium lentis |
| 17 | 601189 | 601446 | - | NZ_CP034998.1 | Rhizobium acidisoli |
| 18 | 1639645 | 1639902 | + | NZ_CP054021.1 | Rhizobium indicum |
| 19 | 1158147 | 1158404 | - | NZ_CP071678.1 | Rhizobium ruizarguesonis |
| 20 | 990490 | 990747 | - | NZ_CP006877.1 | Rhizobium gallicum bv. gallicum R602sp |
| 21 | 956070 | 956327 | - | NZ_CP013500.1 | Rhizobium esperanzae |
| 22 | 1019743 | 1020000 | - | NZ_CP013532.1 | Rhizobium phaseoli |
| 23 | 621985 | 622242 | - | NZ_CP029451.1 | Sinorhizobium fredii CCBAU 25509 |
| 24 | 4082736 | 4082963 | + | NZ_CP020330.1 | Martelella mediterranea DSM 17316 |
| 25 | 504333 | 504587 | - | NZ_CP034909.1 | Ensifer alkalisoli |
| 26 | 2603787 | 2604041 | - | NZ_CP010803.1 | Martelella endophytica |
| 27 | 495723 | 495977 | - | NZ_CP023067.1 | Ensifer sojae CCBAU 05684 |
| 28 | 971126 | 971377 | - | NC_020528.1 | Sinorhizobium meliloti 2011 |
| 29 | 560562 | 560813 | - | NZ_CP015880.1 | Ensifer adhaerens |
| 30 | 959063 | 959317 | - | NZ_CP013107.1 | Sinorhizobium americanum |
| 31 | 1021874 | 1022131 | - | NZ_CP041238.1 | Ensifer mexicanus |
| 32 | 3574567 | 3574830 | + | NZ_CP032509.1 | Georhizobium profundi |
| 33 | 150543 | 150800 | - | NZ_CP010522.1 | Liberibacter crescens |
| 34 | 2674826 | 2675086 | - | NZ_CP017940.1 | Phyllobacterium zundukense |
| 35 | 498359 | 498613 | + | NZ_HG965802.1 | Bartonella henselae |
| 36 | 472176 | 472394 | + | NZ_CP022604.1 | [Ochrobactrum] quorumnocens |
| 37 | 1111822 | 1112079 | + | NZ_AP014648.1 | Methyloceanibacter caenitepidi |
| 38 | 2218971 | 2219231 | + | NZ_CP054836.1 | Oricola thermophila |
| 39 | 1100836 | 1101090 | - | NZ_AP019773.1 | Bartonella quintana |
| 40 | 982128 | 982385 | - | NZ_CP036532.1 | Roseitalea porphyridii |
| 41 | 431675 | 431893 | + | NC_010103.1 | Brucella canis ATCC 23365 |
| 42 | 431674 | 431892 | + | NC_004310.3 | Brucella suis 1330 |
| 43 | 453673 | 453891 | + | NC_009505.1 | Brucella ovis ATCC 25840 |
| 44 | 433705 | 433923 | + | NC_013119.1 | Brucella microti CCM 4915 |
| 45 | 1551000 | 1551218 | - | NC_003317.1 | Brucella melitensis bv. 1 str. 16M |
| 46 | 1554103 | 1554321 | - | NC_022905.1 | Brucella ceti TE10759-12 |
| 47 | 449843 | 450061 | + | NC_007618.1 | Brucella abortus 2308 |
| 48 | 131678 | 131896 | - | NZ_LT605585.1 | Brucella inopinata |
| 49 | 533803 | 534057 | + | NZ_CP064063.1 | Brucella anthropi |
| 50 | 702790 | 703044 | + | NZ_LR134529.1 | Bartonella vinsonii |
| 51 | 339317 | 339571 | + | NZ_CP031844.2 | Bartonella krasnovii |
| 52 | 370504 | 370758 | + | NZ_LR134527.1 | Bartonella elizabethae |
| 53 | 681898 | 682152 | + | NC_010161.1 | Bartonella tribocorum CIP 105476 |
| 54 | 1112954 | 1113208 | + | NZ_CP031843.2 | Bartonella kosoyi |
| 55 | 222285 | 222527 | - | NZ_CP042304.1 | Devosia ginsengisoli |
| 56 | 2607973 | 2608200 | + | NZ_CP048630.1 | Ancylobacter pratisalsi |
| 57 | 467576 | 467830 | + | NC_014932.1 | Bartonella clarridgeiae 73 |
| 58 | 4916395 | 4916649 | + | NZ_CP050296.1 | Mesorhizobium huakuii |
| 59 | 565492 | 565746 | + | NC_012846.1 | Bartonella grahamii as4aup |
| 60 | 5781905 | 5782159 | - | NZ_CP033507.1 | Mesorhizobium jarvisii |
| 61 | 5087948 | 5088166 | - | NZ_CP033361.1 | Mesorhizobium erdmanii |
| 62 | 3109465 | 3109683 | + | NZ_CP072611.1 | Aureimonas populi |
| 63 | 5758794 | 5759048 | - | NC_015675.1 | Mesorhizobium opportunistum WSM2075 |
| 64 | 6171923 | 6172177 | + | NC_002678.2 | Mesorhizobium japonicum MAFF 303099 |
| 65 | 398465 | 398719 | + | NC_008783.1 | Bartonella bacilliformis KC583 |
| 66 | 1811047 | 1811265 | + | NZ_CP015064.1 | Mesorhizobium ciceri biovar biserrulae |
| 67 | 5185064 | 5185315 | - | NC_019973.1 | Mesorhizobium australicum WSM2073 |
| 68 | 2554338 | 2554556 | + | NZ_CP015318.1 | Mesorhizobium amorphae CCNWGS0123 |
| 69 | 1131059 | 1131310 | - | NZ_CP041690.1 | Youhaiella tibetensis |
| 70 | 945764 | 945982 | + | NZ_AP014946.1 | Variibacter gotjawalensis |
| 71 | 2143068 | 2143319 | + | NZ_CP012946.1 | Blastochloris viridis |
| 72 | 861021 | 861248 | - | NC_007964.1 | Nitrobacter hamburgensis X14 |
| 73 | 1452690 | 1452908 | + | NZ_CP018171.1 | Mesorhizobium oceanicum |
| 74 | 850088 | 850339 | + | NZ_CP068983.1 | Paradevosia shaoguanensis |
| 75 | 3470136 | 3470393 | - | NC_022997.1 | Hyphomicrobium nitrativorans NL23 |
| 76 | 2831638 | 2831853 | + | NZ_CP053086.1 | Pelagibacterium halotolerans |
| 77 | 5107691 | 5107930 | - | NZ_CP043538.1 | Methylobacterium mesophilicum SR1.6/6 |
| 78 | 1223954 | 1224202 | + | NZ_CP016616.1 | Microvirga ossetica |
| 79 | 1372821 | 1373075 | + | NZ_CP058235.1 | Bartonella alsatica |
| 80 | 1303749 | 1303994 | - | NZ_LT960614.1 | Hartmannibacter diazotrophicus |
| 81 | 4684915 | 4685142 | + | NC_014217.1 | Starkeya novella DSM 506 |
| 82 | 1351552 | 1351800 | - | NZ_CP045423.1 | Microvirga thermotolerans |
| 83 | 4391290 | 4391526 | - | NZ_CP029550.1 | Methylobacterium durans |
| 84 | 1890079 | 1890330 | - | NZ_CP042968.1 | Bradyrhizobium paxllaeri |
| 85 | 1191806 | 1192063 | + | NC_011666.1 | Methylocella silvestris BL2 |
| 86 | 6531635 | 6531868 | + | NZ_CP016428.1 | Bradyrhizobium icense |
| 87 | 5013674 | 5013889 | + | NC_020908.1 | Octadecabacter arcticus 238 |
| 88 | 1267487 | 1267738 | - | NC_015684.1 | Afipia carboxidovorans OM5 |
| 89 | 2562116 | 2562373 | - | NZ_CP017147.1 | Bosea vaviloviae |
| 90 | 3284120 | 3284371 | - | NZ_CP021112.1 | Pseudorhodoplanes sinuspersici |
| 91 | 1363722 | 1363976 | - | NZ_CP010401.1 | Bartonella ancashensis |
| 92 | 1357110 | 1357358 | - | NC_010581.1 | Beijerinckia indica subsp. indica ATCC 9039 |
| 93 | 2186041 | 2186286 | + | NZ_CP061498.1 | Roseicitreum antarcticum |
| 94 | 1039174 | 1039401 | - | NZ_CP058907.1 | Rhodopseudomonas palustris |
| 95 | 714272 | 714499 | - | NC_007406.1 | Nitrobacter winogradskyi Nb-255 |
| 96 | 4115340 | 4115567 | + | NZ_CP039690.1 | Phreatobacter stygius |
| 97 | 6886224 | 6886451 | - | NC_011894.1 | Methylobacterium nodulans ORS 2060 |
| 98 | 2019667 | 2019900 | - | NC_014313.1 | Hyphomicrobium denitrificans ATCC 51888 |
| 99 | 2154934 | 2155155 | - | NC_014664.1 | Rhodomicrobium vannielii ATCC 17100 |
| 100 | 3568339 | 3568566 | - | NC_009937.1 | Azorhizobium caulinodans ORS 571 |
| 101 | 6105798 | 6106049 | + | NC_020453.1 | Bradyrhizobium oligotrophicum S58 |
| 102 | 438310 | 438564 | + | NC_020300.1 | Bartonella australis Aust/NH1 |
| 103 | 4502756 | 4502971 | + | NC_020911.1 | Octadecabacter antarcticus 307 |
| 104 | 1005422 | 1005643 | + | NZ_CP012669.1 | Altererythrobacter epoxidivorans |
| 105 | 4706599 | 4706880 | + | NZ_CP039546.1 | Methylorubrum populi |
| 106 | 2649310 | 2649561 | + | NZ_AP018907.1 | Blastochloris tepida |
| 107 | 3171049 | 3171297 | + | NZ_CP025086.1 | Methylovirgula ligni |
| 108 | 845196 | 845456 | + | NC_009719.1 | Parvibaculum lavamentivorans DS-1 |
| 109 | 1366993 | 1367244 | + | NZ_CP044543.1 | Bradyrhizobium betae |
| 110 | 585823 | 586074 | + | NZ_CP050066.1 | Bradyrhizobium symbiodeficiens |
| 111 | 5482949 | 5483200 | + | NC_017082.1 | Bradyrhizobium cosmicum |
| 112 | 8426159 | 8426410 | + | NZ_CP029425.1 | Bradyrhizobium ottawaense |
| 113 | 316968 | 317228 | + | NZ_CP027668.1 | Phreatobacter cathodiphilus |
| 114 | 2834746 | 2834997 | - | NZ_CP032617.1 | Bradyrhizobium diazoefficiens |
| 115 | 474037 | 474255 | + | NZ_CP003984.1 | Planktomarina temperata RCA23 |
| 116 | 5910114 | 5910365 | + | NZ_LS398110.1 | Bradyrhizobium vignae |
| 117 | 2161526 | 2161744 | - | NZ_CP011310.1 | Aurantiacibacter atlanticus |
| 118 | 2095424 | 2095642 | - | NZ_CP046052.1 | Methylocystis heyeri |
| 119 | 1659568 | 1659819 | - | NZ_CP029426.1 | Bradyrhizobium amphicarpaeae |
| 120 | 6979623 | 6979874 | + | NZ_CP022221.1 | Bradyrhizobium zhanjiangense |
| 121 | 3050537 | 3050752 | - | NZ_CP012160.1 | Octadecabacter temperatus |
| 122 | 2706719 | 2706970 | - | NZ_CP058354.1 | Bradyrhizobium japonicum |
| 123 | 2880314 | 2880565 | - | NZ_CP030050.1 | Bradyrhizobium arachidis |
| 124 | 5361761 | 5362012 | + | NZ_CP030053.1 | Bradyrhizobium guangzhouense |
| 125 | 3293278 | 3293493 | + | NZ_CP024899.1 | Rhodobaca barguzinensis |
| 126 | 1505419 | 1505670 | - | NZ_CP022219.1 | Bradyrhizobium guangxiense |
| 127 | 2306752 | 2307015 | - | NC_008048.1 | Sphingopyxis alaskensis RB2256 |
| 128 | 270485 | 270703 | - | NC_003911.12 | Ruegeria pomeroyi DSS-3 |
| 129 | 411029 | 411247 | - | NZ_CP041659.1 | Sphingomonas xanthus |
| 130 | 3610515 | 3610760 | + | NZ_CP019948.1 | Methylocystis bryophila |
| 131 | 5789539 | 5789790 | + | NZ_CP030051.1 | Bradyrhizobium guangdongense |
| 132 | 1755739 | 1755960 | - | NZ_CP017057.1 | Erythrobacter litoralis |
| 133 | 2148761 | 2148985 | - | NZ_CP035510.1 | Haematobacter massiliensis |
| 134 | 2002263 | 2002487 | - | NZ_CP060052.1 | Croceicoccus marinus |
| 135 | 1898851 | 1899060 | + | NZ_CP031357.1 | Erythrobacter aureus |
| 136 | 162519 | 162755 | + | NZ_CP019437.1 | Thioclava nitratireducens |
| 137 | 3421114 | 3421356 | - | NZ_CP041159.1 | Leisingera aquaemixtae |
| 138 | 2764083 | 2764340 | + | NZ_CP044331.1 | Methylocystis parvus |
| 139 | 2633220 | 2633435 | + | NZ_CP021330.1 | Maritalea myrionectae |
| 140 | 2531867 | 2532088 | + | NZ_CP016033.1 | Erythrobacter neustonensis |
| 141 | 241327 | 241563 | + | NZ_CP038439.1 | Paracoccus liaowanqingii |
| 142 | 139794 | 140045 | + | NZ_CP051131.1 | Parasphingopyxis algicola |
| 143 | 2128501 | 2128740 | - | NZ_CP025430.1 | Paracoccus zhejiangensis |
| 144 | 1689010 | 1689237 | + | NZ_AP019389.1 | Qipengyuania flava |
| 145 | 533343 | 533561 | - | NZ_CP049037.1 | Pseudohalocynthiibacter aestuariivivens |
| 146 | 237107 | 237334 | - | NZ_CP054599.1 | Sulfitobacter pseudonitzschiae |
| 147 | 2124297 | 2124515 | + | NZ_CP042261.1 | Qingshengfaniella alkalisoli |
| 148 | 3564508 | 3564753 | + | NZ_CP010836.1 | Sphingomonas hengshuiensis |
| 149 | 20358 | 20603 | + | NC_009511.1 | Sphingomonas wittichii RW1 |
| 150 | 1196212 | 1196463 | + | NZ_CP030918.1 | Paracoccus suum |
| 151 | 170531 | 170749 | - | NZ_CP053562.1 | Thioclava electrotropha |
| 152 | 2255673 | 2255891 | - | NZ_CP051181.1 | Thalassobius gelatinovorus |
| 153 | 3730968 | 3731186 | + | NZ_CP048788.1 | Roseobacter ponti |
| 154 | 2347555 | 2347800 | + | NZ_CP023449.1 | Rhizorhabdus dicambivorans |
| 155 | 865965 | 866210 | - | NC_006526.2 | Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 |
| 156 | 2827131 | 2827349 | - | NZ_LN832559.1 | Paracoccus aminovorans |
| 157 | 709142 | 709378 | - | NZ_CP024422.1 | Paracoccus yeei |
| 158 | 1187053 | 1187289 | - | NZ_CP030239.1 | Paracoccus mutanolyticus |
| 159 | 1743154 | 1743369 | + | NC_014414.1 | Parvularcula bermudensis HTCC2503 |
| 160 | 1475478 | 1475702 | - | NZ_CP071057.1 | Marinicauda algicola |
| 161 | 3462803 | 3463030 | - | NC_009952.1 | Dinoroseobacter shibae DFL 12 = DSM 16493 |
| 162 | 3789838 | 3790071 | + | NZ_CP034179.1 | Caenibius tardaugens NBRC 16725 |
| 163 | 4039347 | 4039589 | - | NC_023135.1 | Leisingera methylohalidivorans DSM 14336 |
| 164 | 1255727 | 1255948 | + | NC_012982.1 | Hirschia baltica ATCC 49814 |
| 165 | 24305 | 24523 | + | NZ_CP065915.1 | Pelagovum pacificum |
| 166 | 3151313 | 3151531 | - | NZ_CP015230.1 | Epibacterium mobile F1926 |
| 167 | 2531872 | 2532090 | - | NZ_CP022196.1 | Celeribacter ethanolicus |
| 168 | 2689554 | 2689811 | - | NZ_CP061205.1 | Kordiimonas pumila |
| 169 | 1458446 | 1458697 | + | NZ_CP018911.1 | Glycocaulis alkaliphilus |
| 170 | 1200828 | 1201046 | - | NZ_CP004372.1 | Roseibacterium elongatum DSM 19469 |
| 171 | 684639 | 684860 | + | NZ_CP037948.1 | Qipengyuania sediminis |
| 172 | 2691394 | 2691654 | - | NZ_CP027407.1 | Roseobacter denitrificans |
| 173 | 4100575 | 4100835 | + | NC_015730.1 | Roseobacter litoralis Och 149 |
| 174 | 3366482 | 3366700 | + | NZ_CP045201.1 | Pseudopuniceibacterium antarcticum |
| 175 | 4126412 | 4126630 | + | NZ_CP033219.1 | Parasedimentitalea marina |
| 176 | 1458606 | 1458833 | + | NZ_CP014327.1 | Halocynthiibacter arcticus |
| 177 | 573000 | 573242 | + | NZ_CP060717.1 | Sphingomonas rhizophila |
| 178 | 3462621 | 3462878 | + | NZ_CP021047.1 | Phaeobacter gallaeciensis |
| 179 | 4035538 | 4035792 | - | NZ_CP046908.1 | Stappia indica |
| 180 | 3408044 | 3408301 | + | NZ_CP016364.1 | Phaeobacter porticola |
| 181 | 2820404 | 2820622 | - | NZ_CP060436.1 | Pseudooceanicola algae |
| 182 | 3392693 | 3392935 | + | NZ_CP010855.1 | Marinovum algicola DG 898 |
| 183 | 734541 | 734801 | - | NZ_CP020538.1 | Sphingobium herbicidovorans |
| 184 | 2489184 | 2489441 | - | NZ_CP013002.1 | Caulobacter henricii |
| 185 | 2662968 | 2663222 | + | NZ_CP024920.1 | Qipengyuania seohaensis |
| 186 | 158332 | 158559 | - | NZ_CP021404.1 | Pacificitalea manganoxidans |
| 187 | 1745810 | 1746037 | + | NZ_CP053921.1 | Erythrobacter mangrovi |
| 188 | 578548 | 578766 | - | NZ_CP032125.1 | Profundibacter amoris |
| 189 | 1821813 | 1822031 | + | NZ_CP012023.1 | Celeribacter marinus |
| 190 | 302532 | 302747 | + | NZ_CP004393.1 | Celeribacter indicus |
| 191 | 1379526 | 1379771 | - | NZ_AP017655.1 | Sphingobium cloacae |
| 192 | 755579 | 755824 | + | NZ_CP060782.1 | Sphingomonas sediminicola |
| 193 | 1441077 | 1441331 | - | NZ_CP014525.1 | Haematospirillum jordaniae |
| 194 | 1679979 | 1680218 | + | NZ_CP023705.1 | Sphingomonas melonis |
| 195 | 1492179 | 1492397 | + | NZ_CP034348.1 | Roseovarius faecimaris |
| 196 | 2521082 | 2521300 | - | NZ_CP015093.1 | Salipiger abyssi |
| 197 | 5083876 | 5084109 | - | NZ_CP026100.1 | Caulobacter flavus |
| 198 | 4700372 | 4700614 | - | NZ_CP006644.1 | Sphingomonas sanxanigenens DSM 19645 = NX02 |
| 199 | 280178 | 280396 | - | NZ_CP060780.1 | Sphingomonas daechungensis |
| 200 | 840613 | 840864 | + | NZ_CP011805.1 | Pelagerythrobacter marensis |
| 201 | 1459459 | 1459713 | + | NZ_CP027850.1 | Caulobacter segnis |
| 202 | 2308196 | 2308450 | - | NC_011916.1 | Caulobacter vibrioides NA1000 |
| 203 | 2444137 | 2444352 | + | NZ_CP020470.1 | Rhodobacter blasticus |
| 204 | 3553504 | 3553743 | - | NZ_CP009571.1 | Sphingomonas taxi |
| 205 | 2306446 | 2306703 | - | NZ_LR588407.1 | Brevundimonas vancanneytii |
| 206 | 3257995 | 3258210 | - | NZ_CP024201.1 | Caulobacter mirabilis |
| 207 | 1132204 | 1132452 | + | NZ_CP053923.1 | Defluviicoccus vanus |
| 208 | 1791940 | 1792182 | - | NZ_CP029479.1 | Phenylobacterium parvum |
| 209 | 598590 | 598808 | - | NZ_CP015421.1 | Rhodovulum sulfidophilum |
| 210 | 1559620 | 1559835 | + | NZ_CP048815.1 | Caulobacter rhizosphaerae |
| 211 | 796177 | 796407 | - | NC_016026.1 | Micavibrio aeruginosavorus ARL-13 |
| 212 | 875955 | 876221 | + | NZ_CP029352.1 | Azospirillum thermophilum |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP053856.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF13292.8 | 0.74 | 156 | 915.5 | same-strand | 1-deoxy-D-xylulose-5-phosphate synthase |
| 2 | PF02779.26 | 0.74 | 157 | 916 | same-strand | Transketolase, pyrimidine binding domain |
| 3 | PF02780.22 | 0.75 | 159 | 916 | same-strand | Transketolase, C-terminal domain |
| 4 | PF00850.21 | 0.62 | 131 | 21.0 | same-strand | Histone deacetylase domain |
++ More..