ProsmORF-pred
Result : A0LIJ2
Protein Information
Information Type Description
Protein name 50S ribosomal protein L23
NCBI Accession ID CP000478.1
Organism Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB)
Left 1918671
Right 1918964
Strand +
Nucleotide Sequence ATGAATGAGAAATCGTACCGGATTCTCAAGCGTCCTCTAGTCACTGAAAAGAGCACCACCGAGAAGGATGAGCACAACAAGCTCTTTTTCGAAGTGGACCGCCGGGCGAACAAGATCGAGATCAAGGAGGCGGTGGAGCAGATTTTCAAGGTGGATGTGCTGGATGTGGCGACGATGAATGTCCGGGGGAAGAAGAAGCGCGTCGGCCGTTACTTTACGAAACGAGCCGACCGGAAAAAGGCTATGGTCACGATCAAGCCCGGTCAGCGCGTTGAATTCTTTGAAGGTGTATAG
Sequence MNEKSYRILKRPLVTEKSTTEKDEHNKLFFEVDRRANKIEIKEAVEQIFKVDVLDVATMNVRGKKKRVGRYFTKRADRKKAMVTIKPGQRVEFFEGV
Source of smORF Swiss-Prot
Function One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome. {ECO:0000255|HAMAP-Rule:MF_01369}.
Pubmed ID
Domain CDD:412311
Functional Category Ribosomal_protein
Uniprot ID A0LIJ2
ORF Length (Amino Acid) 97
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Conservation Analysis
Conservation Analysis
No. of Species: 196
Sr.No. Left Position Right Position Strand NCBI Accession id Species Name
1 1918671 1918964 + NC_008554.1 Syntrophobacter fumaroxidans MPOB
2 368009 368302 - NZ_CP040098.1 Desulfoglaeba alkanexedens ALDC
3 2490633 2490887 - NC_011768.1 Desulfatibacillum aliphaticivorans
4 701595 701879 + NC_007517.1 Geobacter metallireducens GS-15
5 3234802 3235092 - NC_014365.1 Desulfarculus baarsii DSM 2075
6 3127624 3127893 - NC_002939.5 Geobacter sulfurreducens PCA
7 315215 315451 + NC_007759.1 Syntrophus aciditrophicus SB
8 1207488 1207775 + NZ_CP061799.1 Desulfonema limicola
9 2597336 2597581 - NC_018870.1 Thermacetogenium phaeum DSM 12270
10 2415025 2415312 - NZ_AP021875.1 Desulfosarcina widdelii
11 842061 842318 + NC_009943.1 Desulfococcus oleovorans Hxd3
12 6979817 6980104 + NZ_AP021876.1 Desulfosarcina ovata subsp. sediminis
13 1047586 1047840 + NZ_CP061800.1 Desulfonema magnum
14 463179 463466 + NC_019903.1 Desulfitobacterium dichloroeliminans LMG P-21439
15 2377577 2377864 - NZ_AP021874.1 Desulfosarcina alkanivorans
16 1657492 1657749 - NC_015388.1 Desulfobacca acetoxidans DSM 11109
17 1405148 1405384 + NC_010337.2 Heliomicrobium modesticaldum Ice1
18 4014790 4015074 - NC_011979.1 Geobacter daltonii FRC-32
19 745035 745289 + NZ_CP009788.1 Geobacter pickeringii
20 1274690 1274944 + NC_009483.1 Geobacter uraniireducens Rf4
21 6074945 6075235 + NC_018025.1 Desulfomonile tiedjei DSM 6799
22 2936494 2936760 + NZ_CP045798.1 Thermoanaerosceptrum fracticalcis
23 650689 650979 - NZ_CP048877.1 Thermosulfuriphilus ammonigenes
24 439341 439595 + NC_018017.1 Desulfitobacterium dehalogenans ATCC 51507
25 470981 471235 + NC_011830.1 Desulfitobacterium hafniense DCB-2
26 2961768 2962004 - NZ_CP045875.1 Heliorestis convoluta
27 2775225 2775497 - NC_013205.1 Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446
28 181189 181476 + NZ_CP034118.1 Staphylospora marina
29 699011 699307 + NC_016148.1 Thermovirga lienii DSM 17291
30 501713 502000 + NC_018068.1 Desulfosporosinus acidiphilus SJ4
31 1171421 1171657 + NZ_CP022121.1 Dehalobacterium formicoaceticum
32 471240 471536 + NC_018024.1 Acetomicrobium mobile DSM 13181
33 2244015 2244302 + NZ_AP018449.1 Methylomusa anaerophila
34 4065235 4065522 - NC_018645.1 Desulfobacula toluolica Tol2
35 5496565 5496894 - NC_013440.1 Haliangium ochraceum DSM 14365
36 57383 57670 + NZ_CP036259.1 Sporomusa termitida
37 303859 304113 + NZ_CP007032.1 Desulfitobacterium metallireducens DSM 15288
38 1099345 1099629 + NC_011146.1 Citrifermentans bemidjiense Bem
39 138005 138244 + NC_011899.1 Halothermothrix orenii H 168
40 1396640 1396924 + NC_010814.1 Geobacter lovleyi SZ
41 3686539 3686823 - NZ_AP023213.1 Citrifermentans bremense
42 2663366 2663602 - NC_008346.1 Syntrophomonas wolfei subsp. wolfei str. Goettingen G311
43 1223454 1223750 - NC_013522.1 Thermanaerovibrio acidaminovorans DSM 6589
44 723950 724234 + NC_008609.1 Pelobacter propionicus DSM 2379
45 3318211 3318450 - NC_016894.1 Acetobacterium woodii DSM 1030
46 2496256 2496546 - NZ_CP017237.1 Moorella thermoacetica
47 1081887 1082165 + NZ_CP035108.1 Geovibrio thiophilus
48 163744 164034 - NZ_AP017312.1 Aneurinibacillus soli
49 1195263 1195559 + NC_010162.1 Sorangium cellulosum So ce56
50 1783699 1783947 - NC_013939.1 Deferribacter desulfuricans SSM1
51 2345291 2345548 - NZ_CP012332.1 Vulgatibacter incomptus
52 2485419 2485724 + NZ_CP012159.1 Chondromyces crocatus
53 1640607 1640888 - NC_015437.1 Selenomonas sputigena ATCC 35185
54 1555722 1556000 - NC_014758.1 Calditerrivibrio nitroreducens DSM 19672
55 240107 240394 + NC_018515.1 Desulfosporosinus meridiei DSM 13257
56 1403454 1403693 + NZ_CP059066.1 Koleobacter methoxysyntrophicus
57 374152 374403 + NC_014836.1 Desulfurispirillum indicum S5
58 238834 239121 + NC_016584.1 Desulfosporosinus orientis DSM 765
59 3111022 3111276 - NZ_CP010802.1 Desulfuromonas soudanensis
60 9028635 9028931 - NZ_CP016211.1 Minicystis rosea
61 138245 138535 + NC_013791.2 Alkalihalobacillus pseudofirmus OF4
62 407465 407752 + NC_015172.1 Syntrophobotulus glycolicus DSM 8271
63 1674039 1674323 - NZ_LT906470.1 Veillonella rodentium
64 1616290 1616574 - NZ_AP022321.1 Veillonella nakazawae
65 1672886 1673170 - NZ_LR134375.1 Veillonella dispar
66 1732556 1732840 - NZ_LR778174.1 Veillonella parvula
67 321049 321306 + NZ_CP010822.1 Thermus aquaticus Y51MC23
68 1039247 1039486 - NZ_CP008796.1 Thermodesulfobacterium commune DSM 2178
69 854558 854812 + NC_007498.2 Syntrophotalea carbinolica DSM 2380
70 2259110 2259346 - NC_014220.1 Syntrophothermus lipocalidus DSM 12680
71 1097973 1098263 + NZ_AP019004.1 Phascolarctobacterium faecium
72 441833 442069 + NZ_AP022873.1 Dissulfurispira thermophila
73 5223954 5224238 - NC_009767.1 Roseiflexus castenholzii DSM 13941
74 345077 345313 + NC_021184.1 Desulfoscipio gibsoniae DSM 7213
75 2007052 2007300 + NZ_LT996885.1 Dialister massiliensis
76 233484 233738 + NC_009253.1 Desulfotomaculum reducens MI-1
77 2071902 2072138 - NC_007503.1 Carboxydothermus hydrogenoformans Z-2901
78 305569 305823 + NC_015589.1 Desulfotomaculum ruminis DSM 2154
79 170401 170691 + NC_002570.2 Alkalihalobacillus halodurans C-125
80 1867299 1867595 + NZ_CP042829.1 Tepidiforma bonchosmolovskayae
81 2590688 2590981 - NZ_AP019309.1 Intestinibaculum porci
82 3758050 3758289 - NC_014624.2 Eubacterium callanderi
83 2165340 2165579 - NZ_CP029487.1 Eubacterium maltosivorans
84 1377887 1378126 + NZ_CP019962.1 Eubacterium limosum
85 558064 558351 + NZ_CP046996.1 Dehalobacter restrictus
86 5702114 5702404 - NZ_CP034346.1 Paenibacillus lutimineralis
87 692518 692754 + NZ_LT635772.1 Anaerococcus mediterraneensis
88 152918 153208 + NZ_CP041666.1 Radiobacillus deserti
89 3720444 3720683 + NZ_CP017269.1 Geosporobacter ferrireducens
90 3450598 3450888 + NZ_CP008876.1 Terribacillus goriensis
91 1398361 1398651 + NC_017310.1 Desulfovibrio vulgaris RCH1
92 387613 387867 + NZ_CP019698.1 Desulfotomaculum ferrireducens
93 241328 241579 + NZ_CP048103.1 Kroppenstedtia eburnea
94 215307 215546 + NC_015519.1 Tepidanaerobacter acetatoxydans Re1
95 3679500 3679763 - NC_011831.1 Chloroflexus aggregans DSM 9485
96 145411 145698 + NC_017668.1 Halobacillus halophilus DSM 2266
97 1679780 1680019 + NZ_AP014945.1 Caldimicrobium thiodismutans
98 633751 633990 + NZ_CP009761.1 Parvimonas micra
99 1628259 1628549 + NZ_CP063356.1 Anaerobacillus isosaccharinicus
100 1143204 1143488 + NZ_CP053187.1 Turicibacter sanguinis
101 1129255 1129515 - NZ_CP048429.1 Paenibacillus jilunlii
102 6435925 6436185 - NZ_CP009287.1 Paenibacillus graminis
103 1151580 1151840 - NZ_CP068595.1 Paenibacillus sonchi
104 2748876 2749118 - NC_014831.1 Thermaerobacter marianensis DSM 12885
105 4212092 4212367 - NZ_CP020569.1 Streptomyces gilvosporeus
106 4182411 4182650 - NZ_CP020559.1 Clostridium formicaceticum
107 5020287 5020547 - NZ_CP009286.1 Paenibacillus stellifer
108 354699 354935 + NC_015555.1 Thermoanaerobacterium xylanolyticum LX-11
109 2256120 2256356 - NZ_CP047602.1 Thermoanaerobacterium aotearoense
110 2316424 2316711 + NC_020304.1 Desulfocapsa sulfexigens DSM 10523
111 6282624 6282884 - NZ_CP021780.1 Paenibacillus donghaensis
112 747802 748041 + NC_015682.1 Thermodesulfobacterium geofontis OPF15
113 51070 51357 - NZ_CP039710.1 Thermoactinomyces vulgaris
114 1216012 1216248 - NC_015949.1 Caldicellulosiruptor lactoaceticus 6A
115 1813024 1813260 - NC_014721.1 Caldicellulosiruptor kristjanssonii I77R1B
116 1003689 1003925 + NZ_CP034791.1 Caldicellulosiruptor changbaiensis
117 2403800 2404036 - NC_009437.1 Caldicellulosiruptor saccharolyticus DSM 8903
118 675479 675736 + NZ_CP036250.1 Egicoccus halophilus
119 1038905 1039141 + NC_014652.1 Caldicellulosiruptor hydrothermalis 108
120 1146269 1146505 + NC_014720.1 Caldicellulosiruptor kronotskyensis 2002
121 1819299 1819535 - NC_012034.1 Caldicellulosiruptor bescii DSM 6725
122 55507 55794 - NZ_CP020772.1 Halobacillus mangrovi
123 7400798 7401058 - NZ_CP009285.1 Paenibacillus borealis
124 6157632 6157892 - NZ_CP009428.1 Paenibacillus odorifer
125 1279694 1279969 + NZ_CP027770.1 Staphylococcus felis
126 4690671 4690931 - NZ_CP004078.1 Paenibacillus sabinae T27
127 5297740 5298000 - NZ_CP009288.1 Paenibacillus durus
128 5780699 5780989 - NZ_CP015136.1 Luteitalea pratensis
129 1568027 1568266 - NZ_CP047141.1 Ligilactobacillus animalis
130 314554 314790 + NC_013216.1 Desulfofarcimen acetoxidans DSM 771
131 974998 975234 + NC_014392.1 Caldicellulosiruptor obsidiansis OB47
132 1788646 1788903 + NZ_CP021434.1 Tumebacillus avium
133 158118 158408 + NC_014829.1 Evansella cellulosilytica DSM 2522
134 3077390 3077641 - NZ_CP048104.1 Kroppenstedtia pulmonis
135 4642927 4643187 - NZ_CP031455.1 Streptomyces olivoreticuli subsp. olivoreticuli
136 1980149 1980424 - NC_014925.1 Staphylococcus pseudintermedius HKU10-03
137 3500636 3500896 - NZ_CP060404.1 Streptomyces buecherae
138 2174185 2174427 - NC_003869.1 Caldanaerobacter subterraneus subsp. tengcongensis MB4
139 1373243 1373530 - NZ_CP018622.1 Virgibacillus dokdonensis
140 1635681 1635938 + NZ_CP034248.1 Paenibacillus lentus
141 142634 142891 + NZ_AP021853.1 Sporolactobacillus terrae
142 4388037 4388297 + NZ_CP045295.1 Paenibacillus cellulositrophicus
143 129110 129400 + NZ_CP019699.1 Novibacillus thermophilus
144 148860 149147 + NZ_CP017962.1 Virgibacillus halodenitrificans
145 651627 651902 - NZ_CP020773.1 Staphylococcus lutrae
146 2541988 2542275 - NZ_CP013862.1 Lentibacillus amyloliquefaciens
147 1061995 1062282 - NZ_CP022315.1 Virgibacillus phasianinus
148 416040 416276 + NC_014964.1 Thermoanaerobacter brockii subsp. finnii Ako-1
149 431761 432027 + NZ_CP017560.1 Sporosarcina ureilytica
150 2292914 2293150 - NC_015958.1 Thermoanaerobacter wiegelii Rt8.B1
151 131673 131960 + NZ_CP024848.1 Oceanobacillus zhaokaii
152 311702 311995 + NC_019897.1 Thermobacillus composti KWC4
153 1983704 1983979 + NZ_CP065729.1 Macrococcus caseolyticus
154 239383 239658 + NZ_CP047361.1 Macrococcus canis
155 4369137 4369394 - NZ_CP022657.1 Tumebacillus algifaecis
156 1728916 1729191 - NZ_LT906464.1 Staphylococcus muscae
157 7136848 7137108 - NZ_LN831776.1 Paenibacillus riograndensis SBR5
158 3983741 3984001 + NZ_CP016809.1 Paenibacillus ihbetae
159 121222 121509 + NZ_CP012152.1 Anoxybacillus gonensis
160 129335 129574 + NC_014377.1 Thermosediminibacter oceani DSM 16646
161 2814163 2814423 - NZ_CP048882.1 Streptomyces bathyalis
162 9217457 9217720 - NZ_CP007155.1 Kutzneria albida DSM 43870
163 1942417 1942653 - NC_014209.1 Thermoanaerobacter mathranii subsp. mathranii str. A3
164 2013261 2013497 - NC_013921.1 Thermoanaerobacter italicus Ab9
165 938274 938516 + NZ_CP067016.1 Anaerococcus obesiensis
166 322973 323215 + NZ_CP066014.1 Anaerococcus vaginalis
167 1769971 1770246 - NZ_CP045927.1 Staphylococcus agnetis
168 705695 705970 + NZ_CP008747.1 Staphylococcus hyicus
169 348791 349027 - NZ_CP070511.1 Parageobacillus toebii
170 4737088 4737375 + NZ_CP018866.1 Sutcliffiella cohnii
171 271418 271663 + NZ_CP031835.1 Lactobacillus amylolyticus
172 3265783 3266019 + NZ_CP064060.1 Anoxybacillus caldiproteolyticus
173 790063 790350 + NZ_CP014872.1 Fructilactobacillus lindneri
174 3622926 3623216 - NZ_CP014167.1 Paenibacillus yonginensis
175 167583 167870 + NZ_CP023665.1 Bacillus paralicheniformis
176 1523035 1523274 - NZ_LT906446.1 Megamonas hypermegale
177 1549273 1549521 - NZ_CP015444.1 Lactobacillus helveticus
178 625557 625859 + NZ_CP012117.1 Dermabacter vaginalis
179 403509 403748 + NZ_CP018809.1 Lactobacillus jensenii
180 398995 399282 + NZ_CP045562.1 Fructilactobacillus fructivorans
181 395276 395524 + NZ_CP059829.1 Lactobacillus ultunensis
182 334693 334932 + NC_008530.1 Lactobacillus gasseri ATCC 33323 = JCM 1131
183 337640 337879 + NZ_AP018549.1 Lactobacillus paragasseri
184 1101164 1101451 - NZ_CP045563.1 Fructilactobacillus sanfranciscensis
185 339398 339637 + NZ_CP059276.1 Lactobacillus taiwanensis
186 1320317 1320556 - NZ_CP045530.1 Limosilactobacillus pontis
187 807972 808211 - NZ_CP042374.1 Leuconostoc carnosum
188 292285 292530 + NC_021181.2 Lactobacillus acidophilus La-14
189 355497 355745 + NZ_CP061341.1 Lactobacillus kefiranofaciens
190 1513139 1513375 - NZ_CP045240.1 Limosilactobacillus vaginalis
191 1719617 1719922 + NZ_LT635457.1 Actinomyces pacaensis
192 1142955 1143215 + NC_012440.1 Persephonella marina EX-H1
193 1566911 1567150 - NZ_CP045605.1 Limosilactobacillus reuteri
194 1760007 1760306 - NZ_CP044548.2 Janibacter melonis
195 576330 576581 + NZ_CP013290.1 Janibacter indicus
196 4435471 4435770 - NZ_CP011112.1 Luteipulveratus mongoliensis
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Neighborhood Conservation Analysis
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Conservation Analysis
Neighborhood Representative Chosen(Species): NC_014365.1
Sr.No. Domain Co-occurrence Frequency No. of species in which domain occurs with smORF Median distance b/w smORF and domain bearing ORFs Orientation relative to smORF PFAM Information
1 PF00009.29 0.75 147 2243 same-strand Elongation factor Tu GTP binding domain
2 PF03143.19 0.67 131 1862 same-strand Elongation factor Tu C-terminal domain
3 PF03144.27 0.75 147 2217 same-strand Elongation factor Tu domain 2
4 PF01926.25 0.69 135 1926 same-strand 50S ribosome-binding GTPase
5 PF00338.24 0.99 195 1348 same-strand Ribosomal protein S10p/S20e
6 PF00573.24 0.99 195 33 same-strand Ribosomal protein L4/L1 family
7 PF03947.20 0.99 195 28 same-strand Ribosomal Proteins L2, C-terminal domain
8 PF00181.25 0.99 195 28 same-strand Ribosomal Proteins L2, RNA binding domain
9 PF00203.23 0.99 195 898 same-strand Ribosomal protein S19
10 PF00237.21 0.96 189 1208 same-strand Ribosomal protein L22p/L17e
11 PF00189.22 0.98 192 1562.0 same-strand Ribosomal protein S3, C-terminal domain
12 PF07650.19 0.98 192 1562.0 same-strand KH domain
13 PF00252.20 0.97 191 2232 same-strand Ribosomal protein L16p/L10e
14 PF03764.20 0.61 119 3059 same-strand Elongation factor G, domain IV
15 PF00679.26 0.61 119 3059 same-strand Elongation factor G C-terminus
16 PF14492.8 0.61 119 3059 same-strand Elongation Factor G, domain III
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