Result : Q8RIE3
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 30S ribosomal protein S6 |
| NCBI Accession ID | |
| Organism | Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / DSM 15643 / BCRC 10681 / CIP 101130 / JCM 8532 / KCTC 2640 / LMG 13131 / VPI 4355) |
| Left | |
| Right | |
| Strand | |
| Nucleotide Sequence | |
| Sequence | MRKYEIMYIINPTVLEEGREELVNQVNALLTSNGATIAKTEKWGERKLAYPIDKKKSGFYVLTTFEIDGTKLAEVESKLNIMESVMRYIVVKQD |
| Source of smORF | Swiss-Prot |
| Function | Binds together with S18 to 16S ribosomal RNA. {ECO:0000255|HAMAP-Rule:MF_00360}. |
| Pubmed ID | 11889109 |
| Domain | CDD:412366 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | Q8RIE3 |
| ORF Length (Amino Acid) | 94 |
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| Conservation Analysis |
No. of Species: 17
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 420069 | 420353 | + | NZ_LN831027.1 | Fusobacterium nucleatum subsp. polymorphum |
| 2 | 507500 | 507784 | + | NZ_CP068114.1 | Fusobacterium canifelinum |
| 3 | 559659 | 559943 | + | NZ_CP013336.1 | Fusobacterium hwasookii ChDC F206 |
| 4 | 1007340 | 1007624 | - | NZ_CP024699.1 | Fusobacterium pseudoperiodonticum |
| 5 | 374136 | 374420 | + | NZ_CP028107.1 | Fusobacterium necrophorum subsp. funduliforme |
| 6 | 220599 | 220883 | - | NZ_CP028106.1 | Fusobacterium gonidiaformans ATCC 25563 |
| 7 | 1103093 | 1103377 | + | NZ_CP028103.1 | Fusobacterium varium ATCC 27725 |
| 8 | 1421868 | 1422152 | + | NZ_CP028105.1 | Fusobacterium ulcerans |
| 9 | 450359 | 450643 | - | NZ_CP028102.1 | Fusobacterium mortiferum ATCC 9817 |
| 10 | 1968828 | 1969106 | - | NC_014632.1 | Ilyobacter polytropus DSM 2926 |
| 11 | 106336 | 106620 | + | NZ_AP019846.1 | Leptotrichia hongkongensis |
| 12 | 217606 | 217890 | + | NC_013192.1 | Leptotrichia buccalis C-1013-b |
| 13 | 2229133 | 2229417 | - | NZ_AP019829.2 | Leptotrichia wadei |
| 14 | 2548437 | 2548721 | - | NZ_AP019845.1 | Leptotrichia trevisanii |
| 15 | 2085068 | 2085352 | - | NZ_AP019827.1 | Leptotrichia shahii |
| 16 | 2214122 | 2214406 | - | NZ_AP019822.1 | Pseudoleptotrichia goodfellowii |
| 17 | 1631131 | 1631412 | - | NC_013515.1 | Streptobacillus moniliformis DSM 12112 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP028107.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01084.22 | 1.0 | 17 | 52 | same-strand | Ribosomal protein S18 |
| 2 | PF02873.18 | 0.71 | 12 | 3170.5 | same-strand | UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain |
| 3 | PF01565.25 | 0.71 | 12 | 3170.5 | same-strand | FAD binding domain |
| 4 | PF08478.12 | 0.71 | 12 | 1964.0 | same-strand | POTRA domain, FtsQ-type |
| 5 | PF00091.27 | 0.71 | 12 | 102.0 | same-strand | Tubulin/FtsZ family, GTPase domain |
| 6 | PF12327.10 | 0.71 | 12 | 102.0 | same-strand | FtsZ family, C-terminal domain |
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