Result : Q8RGH1
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 50S ribosomal protein L35 |
| NCBI Accession ID | AE009951.2 |
| Organism | Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / DSM 15643 / BCRC 10681 / CIP 101130 / JCM 8532 / KCTC 2640 / LMG 13131 / VPI 4355) |
| Left | 961389 |
| Right | 961595 |
| Strand | - |
| Nucleotide Sequence | ATGCCAAAGATGAAAACTCATAGAGGAGCTAAAAAAAGAATTAAAGTAACTGGAACTGGGAAATTTGTTATTAAACATTCTGGTAAAAGCCATATCTTAACTAAAAAAGACAGAAAAAGAAAGAACCACTTAAAGAAAGATGCTGTGGTTACTGAAACTTATAAGAGACATATGCAAGGATTATTACCATATGGAGAAGGAAGATAA |
| Sequence | MPKMKTHRGAKKRIKVTGTGKFVIKHSGKSHILTKKDRKRKNHLKKDAVVTETYKRHMQGLLPYGEGR |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl00392. Profile Description: Ribosomal protein L35. This ribosomal protein is found in bacteria and organelles only. It is not closely related to any eukaryotic or archaeal ribosomal protein. [Protein synthesis, Ribosomal proteins: synthesis and modification] |
| Pubmed ID | 11889109 |
| Domain | CDD:412354 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | Q8RGH1 |
| ORF Length (Amino Acid) | 68 |
++ More..
| Conservation Analysis |
No. of Species: 316
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 910495 | 910701 | - | NZ_CP068114.1 | Fusobacterium canifelinum |
| 2 | 2013154 | 2013360 | + | NZ_CP024699.1 | Fusobacterium pseudoperiodonticum |
| 3 | 2348395 | 2348601 | - | NZ_CP013336.1 | Fusobacterium hwasookii ChDC F206 |
| 4 | 796948 | 797154 | - | NZ_LN831027.1 | Fusobacterium nucleatum subsp. polymorphum |
| 5 | 643408 | 643614 | + | NZ_CP028106.1 | Fusobacterium gonidiaformans ATCC 25563 |
| 6 | 787009 | 787215 | - | NZ_CP028107.1 | Fusobacterium necrophorum subsp. funduliforme |
| 7 | 1343241 | 1343447 | + | NZ_CP028103.1 | Fusobacterium varium ATCC 27725 |
| 8 | 1678043 | 1678249 | + | NZ_CP028105.1 | Fusobacterium ulcerans |
| 9 | 996534 | 996740 | + | NZ_CP028102.1 | Fusobacterium mortiferum ATCC 9817 |
| 10 | 654141 | 654338 | + | NC_015949.1 | Caldicellulosiruptor lactoaceticus 6A |
| 11 | 1549936 | 1550133 | - | NC_014652.1 | Caldicellulosiruptor hydrothermalis 108 |
| 12 | 1241901 | 1242098 | + | NC_014721.1 | Caldicellulosiruptor kristjanssonii I77R1B |
| 13 | 1296864 | 1297061 | + | NC_012034.1 | Caldicellulosiruptor bescii DSM 6725 |
| 14 | 1921318 | 1921515 | - | NZ_LT906477.1 | Clostridium cochlearium |
| 15 | 1083174 | 1083371 | + | NC_014657.1 | Caldicellulosiruptor owensensis OL |
| 16 | 1652487 | 1652693 | - | NC_014632.1 | Ilyobacter polytropus DSM 2926 |
| 17 | 1666060 | 1666257 | - | NC_014720.1 | Caldicellulosiruptor kronotskyensis 2002 |
| 18 | 456857 | 457054 | + | NZ_CP045798.1 | Thermoanaerosceptrum fracticalcis |
| 19 | 1469304 | 1469501 | - | NC_014392.1 | Caldicellulosiruptor obsidiansis OB47 |
| 20 | 3168790 | 3168987 | + | NZ_CP023671.1 | Clostridium septicum |
| 21 | 1649362 | 1649559 | - | NZ_CP027286.1 | Clostridium chauvoei |
| 22 | 2927688 | 2927885 | + | NZ_CP071376.1 | Clostridium gasigenes |
| 23 | 3049653 | 3049850 | + | NZ_CP071376.1 | Clostridium gasigenes |
| 24 | 800578 | 800775 | + | NZ_CP016786.1 | Clostridium isatidis |
| 25 | 1437079 | 1437276 | - | NZ_CP016786.1 | Clostridium isatidis |
| 26 | 2388455 | 2388652 | - | NC_008261.1 | Clostridium perfringens ATCC 13124 |
| 27 | 1615160 | 1615357 | + | NZ_CP040924.1 | Clostridium thermarum |
| 28 | 2468582 | 2468779 | - | NC_014376.1 | [Clostridium] saccharolyticum WM1 |
| 29 | 3199059 | 3199256 | - | NC_011837.1 | Clostridium kluyveri NBRC 12016 |
| 30 | 964794 | 964991 | + | NC_008593.1 | Clostridium novyi NT |
| 31 | 2398498 | 2398695 | + | NC_014393.1 | Clostridium cellulovorans 743B |
| 32 | 3793895 | 3794092 | - | NZ_CP015756.1 | Clostridium estertheticum subsp. estertheticum |
| 33 | 763520 | 763717 | + | NC_016148.1 | Thermovirga lienii DSM 17291 |
| 34 | 3308058 | 3308255 | - | NZ_CP028842.1 | Clostridium botulinum |
| 35 | 3551061 | 3551258 | - | NZ_CP011663.1 | Clostridium sporogenes |
| 36 | 2385893 | 2386090 | + | NZ_CP059066.1 | Koleobacter methoxysyntrophicus |
| 37 | 4380666 | 4380863 | - | NZ_CP022464.2 | Enterocloster bolteae |
| 38 | 2297744 | 2297941 | + | NC_011146.1 | Citrifermentans bemidjiense Bem |
| 39 | 6175981 | 6176178 | - | NZ_CP061799.1 | Desulfonema limicola |
| 40 | 1306011 | 1306208 | + | NZ_CP032364.1 | Lachnoanaerobaculum umeaense |
| 41 | 2056506 | 2056703 | + | NZ_AP023213.1 | Citrifermentans bremense |
| 42 | 2311684 | 2311881 | - | NZ_HG917868.1 | Clostridium bornimense |
| 43 | 1895358 | 1895555 | - | NC_012691.1 | Tolumonas auensis DSM 9187 |
| 44 | 1385487 | 1385684 | - | NC_016630.1 | Filifactor alocis ATCC 35896 |
| 45 | 2213942 | 2214139 | - | NZ_CP016379.1 | Anoxybacter fermentans |
| 46 | 2831063 | 2831260 | - | NZ_CP022121.1 | Dehalobacterium formicoaceticum |
| 47 | 1610228 | 1610425 | + | NZ_CP014176.1 | Clostridium argentinense |
| 48 | 1282322 | 1282519 | + | NC_014614.1 | Acetoanaerobium sticklandii |
| 49 | 857823 | 858020 | - | NZ_LR130778.1 | Petrocella atlantisensis |
| 50 | 1440403 | 1440600 | - | NZ_CP012395.1 | Clostridium autoethanogenum DSM 10061 |
| 51 | 3767216 | 3767413 | - | NC_014328.1 | Clostridium ljungdahlii DSM 13528 |
| 52 | 3065807 | 3066004 | - | NC_022571.1 | Clostridium saccharobutylicum DSM 13864 |
| 53 | 2594866 | 2595063 | - | NZ_CP045875.1 | Heliorestis convoluta |
| 54 | 2129769 | 2129966 | - | NZ_CP036523.1 | Peptacetobacter hiranonis |
| 55 | 728029 | 728226 | + | NC_015519.1 | Tepidanaerobacter acetatoxydans Re1 |
| 56 | 1664628 | 1664825 | + | NC_002939.5 | Geobacter sulfurreducens PCA |
| 57 | 922479 | 922676 | + | NZ_CP022413.2 | Blautia hansenii DSM 20583 |
| 58 | 810119 | 810316 | + | NZ_CP030280.1 | Blautia argi |
| 59 | 1796855 | 1797052 | + | NZ_CP043998.1 | Clostridium diolis |
| 60 | 516861 | 517058 | + | NC_008554.1 | Syntrophobacter fumaroxidans MPOB |
| 61 | 3208208 | 3208405 | - | NZ_CP014150.1 | Paeniclostridium sordellii |
| 62 | 2321628 | 2321825 | - | NZ_LR027880.1 | Roseburia intestinalis L1-82 |
| 63 | 1888008 | 1888205 | - | NZ_CP009788.1 | Geobacter pickeringii |
| 64 | 1773115 | 1773312 | - | NZ_CP014204.2 | Clostridium baratii |
| 65 | 644290 | 644487 | + | NC_015520.1 | Mahella australiensis 50-1 BON |
| 66 | 3051709 | 3051906 | - | NC_009483.1 | Geobacter uraniireducens Rf4 |
| 67 | 6154474 | 6154671 | - | NZ_CP061800.1 | Desulfonema magnum |
| 68 | 1541084 | 1541278 | + | NZ_CP019698.1 | Desulfotomaculum ferrireducens |
| 69 | 2871094 | 2871291 | + | NC_020291.1 | Clostridium saccharoperbutylacetonicum N1-4(HMT) |
| 70 | 570748 | 570954 | + | NC_013515.1 | Streptobacillus moniliformis DSM 12112 |
| 71 | 4748937 | 4749134 | - | NZ_CP020953.1 | Clostridium drakei |
| 72 | 5157317 | 5157514 | + | NZ_CP009933.1 | Clostridium scatologenes |
| 73 | 3924771 | 3924968 | - | NZ_CP011803.1 | Clostridium carboxidivorans P7 |
| 74 | 1716769 | 1716966 | - | NZ_CP011367.1 | Thioalkalivibrio versutus |
| 75 | 1467285 | 1467482 | - | NC_014216.1 | Desulfurivibrio alkaliphilus AHT 2 |
| 76 | 3716874 | 3717071 | - | NC_011979.1 | Geobacter daltonii FRC-32 |
| 77 | 1791633 | 1791830 | + | NZ_CP013019.1 | Clostridium pasteurianum |
| 78 | 2098968 | 2099162 | - | NC_009922.1 | Alkaliphilus oremlandii OhILAs |
| 79 | 1517010 | 1517207 | + | NZ_HF545616.1 | Ruminococcus bicirculans |
| 80 | 1624426 | 1624623 | + | NC_014972.1 | Desulfobulbus propionicus DSM 2032 |
| 81 | 2509242 | 2509439 | - | NZ_CP040058.1 | Anaerostipes rhamnosivorans |
| 82 | 1119185 | 1119382 | + | NZ_CP036345.1 | Anaerostipes caccae L1-92 |
| 83 | 119835 | 120032 | + | NC_018515.1 | Desulfosporosinus meridiei DSM 13257 |
| 84 | 1353798 | 1353995 | + | NZ_CP030775.1 | Clostridium butyricum |
| 85 | 798694 | 798891 | - | NZ_CP017269.1 | Geosporobacter ferrireducens |
| 86 | 868506 | 868703 | + | NZ_CP032416.1 | Clostridium fermenticellae |
| 87 | 3604213 | 3604410 | - | NZ_AP017312.1 | Aneurinibacillus soli |
| 88 | 1717279 | 1717470 | + | NC_021184.1 | Desulfoscipio gibsoniae DSM 7213 |
| 89 | 3454211 | 3454411 | + | NC_014833.1 | Ruminococcus albus 7 = DSM 20455 |
| 90 | 1791016 | 1791213 | + | NC_010337.2 | Heliomicrobium modesticaldum Ice1 |
| 91 | 916097 | 916294 | - | NZ_CP036150.1 | Oceanispirochaeta crateris |
| 92 | 2066115 | 2066312 | + | NC_014541.1 | Ferrimonas balearica DSM 9799 |
| 93 | 3242003 | 3242197 | - | NZ_CP019870.1 | Clostridioides difficile |
| 94 | 3016550 | 3016747 | - | NZ_CP035807.1 | Thiospirochaeta perfilievii |
| 95 | 266479 | 266676 | + | NC_015172.1 | Syntrophobotulus glycolicus DSM 8271 |
| 96 | 140219 | 140416 | + | NC_018068.1 | Desulfosporosinus acidiphilus SJ4 |
| 97 | 124980 | 125177 | + | NC_016584.1 | Desulfosporosinus orientis DSM 765 |
| 98 | 1782707 | 1782907 | - | NZ_AP022873.1 | Dissulfurispira thermophila |
| 99 | 368193 | 368393 | + | NZ_CP046996.1 | Dehalobacter restrictus |
| 100 | 1766793 | 1766990 | - | NZ_LR699011.1 | Roseburia hominis |
| 101 | 2190055 | 2190255 | - | NC_002967.9 | Treponema denticola ATCC 35405 |
| 102 | 1397657 | 1397845 | - | NZ_LT828648.1 | Nitrospira japonica |
| 103 | 859193 | 859390 | + | NZ_CP014170.1 | Clostridium tyrobutyricum |
| 104 | 974627 | 974833 | + | NZ_AP019846.1 | Leptotrichia hongkongensis |
| 105 | 2278397 | 2278594 | - | NZ_LN879430.1 | Herbinix luporum |
| 106 | 305602 | 305799 | + | NZ_CP011390.1 | Flavisolibacter tropicus |
| 107 | 3211173 | 3211370 | - | NZ_CP036170.1 | [Clostridium] scindens ATCC 35704 |
| 108 | 1248277 | 1248483 | + | NZ_AP019845.1 | Leptotrichia trevisanii |
| 109 | 235888 | 236085 | + | NC_011830.1 | Desulfitobacterium hafniense DCB-2 |
| 110 | 459111 | 459308 | - | NC_012780.1 | [Eubacterium] eligens ATCC 27750 |
| 111 | 701697 | 701903 | - | NC_013501.1 | Rhodothermus marinus DSM 4252 |
| 112 | 1631211 | 1631408 | - | NZ_LT635479.1 | Lachnoclostridium phocaeense |
| 113 | 250290 | 250487 | + | NZ_CP027002.1 | [Ruminococcus] gnavus ATCC 29149 |
| 114 | 2318083 | 2318280 | - | NZ_AP017928.1 | Methylocaldum marinum |
| 115 | 4167509 | 4167706 | - | NZ_AP021875.1 | Desulfosarcina widdelii |
| 116 | 1386688 | 1386894 | - | NC_013192.1 | Leptotrichia buccalis C-1013-b |
| 117 | 189236 | 189433 | + | NC_018017.1 | Desulfitobacterium dehalogenans ATCC 51507 |
| 118 | 3443121 | 3443318 | - | NZ_AP021874.1 | Desulfosarcina alkanivorans |
| 119 | 1309472 | 1309678 | - | NZ_AP019827.1 | Leptotrichia shahii |
| 120 | 4814991 | 4815188 | + | NZ_CP042435.1 | Panacibacter ginsenosidivorans |
| 121 | 1347770 | 1347967 | + | NZ_CP051180.1 | Ferrimonas lipolytica |
| 122 | 1891710 | 1891907 | - | NC_015572.1 | Methylomonas methanica MC09 |
| 123 | 2519482 | 2519676 | - | NC_015589.1 | Desulfotomaculum ruminis DSM 2154 |
| 124 | 1766833 | 1767033 | - | NZ_CP017237.1 | Moorella thermoacetica |
| 125 | 1851536 | 1851736 | + | NZ_CP009228.1 | Treponema putidum |
| 126 | 1413899 | 1414099 | + | NZ_CP072793.1 | Thiothrix unzii |
| 127 | 1755209 | 1755403 | + | NC_009253.1 | Desulfotomaculum reducens MI-1 |
| 128 | 37145 | 37342 | + | NZ_CP039456.1 | Changchengzhania lutea |
| 129 | 1405648 | 1405845 | - | NZ_AP019822.1 | Pseudoleptotrichia goodfellowii |
| 130 | 13951 | 14148 | + | NZ_LT990039.1 | Massilistercora timonensis |
| 131 | 175941 | 176138 | + | NC_019903.1 | Desulfitobacterium dichloroeliminans LMG P-21439 |
| 132 | 3014113 | 3014310 | - | NZ_CP038033.1 | Nitrosococcus wardiae |
| 133 | 838775 | 838981 | + | NZ_AP019829.2 | Leptotrichia wadei |
| 134 | 1256613 | 1256807 | + | NC_008346.1 | Syntrophomonas wolfei subsp. wolfei str. Goettingen G311 |
| 135 | 1451875 | 1452069 | + | NC_013037.1 | Dyadobacter fermentans DSM 18053 |
| 136 | 115547 | 115744 | + | NZ_CP007032.1 | Desulfitobacterium metallireducens DSM 15288 |
| 137 | 287271 | 287468 | - | NZ_CP052766.1 | Alteromonas pelagimontana |
| 138 | 4002272 | 4002466 | - | NZ_CP020104.1 | Spirosoma aerolatum |
| 139 | 3290268 | 3290465 | - | NC_013960.1 | Nitrosococcus halophilus Nc 4 |
| 140 | 65379 | 65576 | + | NZ_CP015125.1 | Dokdonia donghaensis DSW-1 |
| 141 | 4792675 | 4792872 | - | NZ_CP039126.1 | Blautia producta |
| 142 | 200396 | 200593 | - | NZ_LT821227.1 | Phoenicibacter congonensis |
| 143 | 2327013 | 2327210 | - | NZ_CP061703.1 | Mesoflavibacter profundi |
| 144 | 427739 | 427939 | + | NC_018018.1 | Bernardetia litoralis DSM 6794 |
| 145 | 2771441 | 2771641 | + | NC_014364.1 | Sediminispirochaeta smaragdinae DSM 11293 |
| 146 | 7997969 | 7998163 | + | NZ_CP025096.1 | Spirosoma pollinicola |
| 147 | 2946622 | 2946819 | + | NC_018010.1 | Belliella baltica DSM 15883 |
| 148 | 2786215 | 2786412 | - | NZ_CP016907.1 | Flavobacterium anhuiense |
| 149 | 2706421 | 2706618 | - | NZ_CP043612.1 | Flavobacterium nitrogenifigens |
| 150 | 5750958 | 5751158 | - | NZ_CP034235.1 | Paenibacillus psychroresistens |
| 151 | 1620260 | 1620457 | + | NZ_CP046670.1 | Alteromonas mediterranea |
| 152 | 1751115 | 1751312 | - | NZ_CP014322.1 | Alteromonas addita |
| 153 | 2393658 | 2393855 | - | NC_015554.1 | Alteromonas naphthalenivorans |
| 154 | 4593435 | 4593632 | - | NZ_CP007451.1 | Draconibacterium orientale |
| 155 | 2937500 | 2937697 | + | NC_016001.1 | Flavobacterium branchiophilum FL-15 |
| 156 | 3985713 | 3985910 | - | NZ_CP012898.1 | Algibacter alginicilyticus |
| 157 | 419701 | 419898 | + | NC_008576.1 | Magnetococcus marinus MC-1 |
| 158 | 4244540 | 4244737 | + | NZ_CP017479.1 | Flavobacterium gilvum |
| 159 | 1377270 | 1377467 | - | NC_014758.1 | Calditerrivibrio nitroreducens DSM 19672 |
| 160 | 966638 | 966826 | + | NC_014387.1 | Butyrivibrio proteoclasticus B316 |
| 161 | 1759472 | 1759669 | + | NZ_CP008849.1 | Alteromonas australica |
| 162 | 3664965 | 3665162 | + | NZ_CP030356.1 | Salinibacter ruber |
| 163 | 3190382 | 3190585 | - | NC_015275.1 | Cellulosilyticum lentocellum DSM 5427 |
| 164 | 892509 | 892706 | + | NZ_CP025791.1 | Flavivirga eckloniae |
| 165 | 1641151 | 1641348 | - | NC_014654.1 | Halanaerobium hydrogeniformans |
| 166 | 1722512 | 1722703 | + | NC_009633.1 | Alkaliphilus metalliredigens QYMF |
| 167 | 2937188 | 2937382 | - | NZ_CP053435.1 | Spirosoma taeanense |
| 168 | 5450083 | 5450277 | + | NZ_CP032382.1 | Chryseolinea soli |
| 169 | 1339840 | 1340034 | + | NZ_AP018724.1 | Sulfurivermis fontis |
| 170 | 2117150 | 2117344 | - | NZ_CP014263.1 | Spirosoma montaniterrae |
| 171 | 3633807 | 3634004 | - | NZ_CP037933.1 | Flavobacterium nackdongense |
| 172 | 4056735 | 4056932 | + | NZ_CP020919.1 | Flavobacterium kingsejongi |
| 173 | 32999 | 33196 | + | NC_009441.1 | Flavobacterium johnsoniae UW101 |
| 174 | 449610 | 449807 | + | NZ_CP042433.1 | Flavisolibacter ginsenosidimutans |
| 175 | 1783866 | 1784063 | - | NZ_CP038810.1 | Flavobacterium sangjuense |
| 176 | 1128542 | 1128733 | - | NZ_CP008796.1 | Thermodesulfobacterium commune DSM 2178 |
| 177 | 2643233 | 2643430 | - | NC_016609.1 | Niastella koreensis GR20-10 |
| 178 | 4898967 | 4899161 | - | NZ_CP050063.1 | Spirosoma aureum |
| 179 | 1425112 | 1425306 | + | NC_015702.1 | Parachlamydia acanthamoebae UV-7 |
| 180 | 3323452 | 3323649 | - | NZ_CP037755.1 | Pseudocnuella soli |
| 181 | 180069 | 180266 | - | NZ_CP042476.1 | Antarcticibacterium arcticum |
| 182 | 3685775 | 3685972 | + | NZ_CP042831.1 | Flavobacterium alkalisoli |
| 183 | 2002525 | 2002722 | - | NZ_LR590481.1 | Hathewaya histolytica |
| 184 | 1957426 | 1957623 | + | NZ_LN877293.1 | Bacteroides fragilis |
| 185 | 3282263 | 3282460 | - | NZ_CP040812.1 | Antarcticibacterium flavum |
| 186 | 4090208 | 4090405 | + | NZ_CP040530.1 | Bacteroides thetaiotaomicron |
| 187 | 348799 | 348996 | + | NZ_CP012938.1 | Bacteroides ovatus |
| 188 | 3652858 | 3653055 | + | NZ_CP042941.1 | Atlantibacter hermannii |
| 189 | 1197960 | 1198154 | - | NC_014655.1 | Leadbetterella byssophila DSM 17132 |
| 190 | 1648178 | 1648375 | + | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 191 | 3852904 | 3853101 | - | NZ_CP019706.1 | Pantoea alhagi |
| 192 | 2019843 | 2020040 | + | NZ_CP061511.1 | Mixta calida |
| 193 | 2070909 | 2071106 | + | NZ_CP026377.1 | Mixta gaviniae |
| 194 | 1212126 | 1212323 | + | NZ_CP028271.1 | Mixta intestinalis |
| 195 | 1959148 | 1959345 | + | NZ_CP054058.1 | Scandinavium goeteborgense |
| 196 | 1895967 | 1896161 | - | NC_010718.1 | Natranaerobius thermophilus JW/NM-WN-LF |
| 197 | 3661531 | 3661725 | + | NC_015914.1 | Cyclobacterium marinum DSM 745 |
| 198 | 4624337 | 4624534 | + | NZ_CP021904.1 | Alkalitalea saponilacus |
| 199 | 4005881 | 4006075 | - | NZ_CP020105.1 | Spirosoma rigui |
| 200 | 1439493 | 1439690 | + | NZ_CP025197.1 | Acetivibrio saccincola |
| 201 | 339881 | 340078 | - | NZ_LR134441.1 | Kaistella antarctica |
| 202 | 289765 | 289962 | - | NZ_CP034159.1 | Kaistella carnis |
| 203 | 1545941 | 1546138 | - | NZ_CP027107.1 | Cronobacter sakazakii |
| 204 | 2330588 | 2330785 | - | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 205 | 1834396 | 1834593 | + | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 206 | 1840924 | 1841121 | + | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 207 | 2167938 | 2168135 | - | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 208 | 1955157 | 1955354 | + | NZ_CP061527.1 | Shigella dysenteriae |
| 209 | 1866760 | 1866957 | + | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 210 | 2029538 | 2029735 | + | NZ_LR134340.1 | Escherichia marmotae |
| 211 | 4388366 | 4388563 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 212 | 3826610 | 3826807 | + | NZ_CP053416.1 | Salmonella bongori |
| 213 | 335778 | 335975 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 214 | 1547009 | 1547206 | + | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 215 | 1799802 | 1799999 | - | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 216 | 1734189 | 1734386 | - | NZ_AP014857.1 | Escherichia albertii |
| 217 | 2647682 | 2647879 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 218 | 2544718 | 2544915 | - | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 219 | 1925322 | 1925519 | + | NZ_CP027986.1 | Enterobacter sichuanensis |
| 220 | 1666433 | 1666630 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 221 | 1860535 | 1860732 | + | NZ_CP017184.1 | Enterobacter roggenkampii |
| 222 | 2790649 | 2790846 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 223 | 633653 | 633850 | - | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 224 | 1920363 | 1920560 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 225 | 1414763 | 1414960 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 226 | 1023817 | 1024014 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 227 | 2101706 | 2101903 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 228 | 975196 | 975393 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 229 | 2141685 | 2141882 | + | NZ_CP043318.1 | Enterobacter chengduensis |
| 230 | 3049591 | 3049788 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 231 | 2077196 | 2077393 | + | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 232 | 2190916 | 2191113 | + | NZ_CP041247.1 | Raoultella electrica |
| 233 | 3160025 | 3160222 | - | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 234 | 1434507 | 1434704 | + | NC_013716.1 | Citrobacter rodentium ICC168 |
| 235 | 3915125 | 3915322 | - | NZ_CP020388.1 | Pluralibacter gergoviae |
| 236 | 3126125 | 3126322 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 237 | 2686332 | 2686529 | + | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 238 | 4998492 | 4998689 | - | NZ_CP026047.1 | Raoultella planticola |
| 239 | 2399652 | 2399849 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 240 | 1423745 | 1423942 | + | NZ_CP011602.1 | Phytobacter ursingii |
| 241 | 2129050 | 2129247 | + | NZ_CP054254.1 | Klebsiella variicola |
| 242 | 2271115 | 2271312 | + | NZ_CP046672.1 | Raoultella ornithinolytica |
| 243 | 2278704 | 2278901 | + | NZ_CP050508.1 | Raoultella terrigena |
| 244 | 2058348 | 2058545 | + | NZ_CP015113.1 | Kosakonia radicincitans |
| 245 | 2438850 | 2439047 | + | NZ_CP060111.1 | Klebsiella michiganensis |
| 246 | 2491027 | 2491224 | + | NZ_CP036175.1 | Klebsiella huaxiensis |
| 247 | 1095834 | 1096028 | - | NZ_CP032317.1 | Hymenobacter oligotrophus |
| 248 | 3480462 | 3480659 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 249 | 2005083 | 2005280 | - | NZ_CP029187.1 | Flavobacterium pallidum |
| 250 | 158421 | 158618 | - | NZ_CP053187.1 | Turicibacter sanguinis |
| 251 | 523513 | 523710 | + | NZ_CP027234.1 | Bacteroides heparinolyticus |
| 252 | 118823 | 119020 | - | NZ_CP039934.1 | Myroides fluvii |
| 253 | 2837177 | 2837377 | - | NZ_CP033052.1 | Bacillus vallismortis |
| 254 | 2769604 | 2769804 | - | NZ_CP048852.1 | Bacillus tequilensis |
| 255 | 2919328 | 2919528 | - | NC_006270.3 | Bacillus licheniformis DSM 13 = ATCC 14580 |
| 256 | 3088270 | 3088464 | + | NZ_CP044285.1 | Hymenobacter baengnokdamensis |
| 257 | 1476110 | 1476307 | + | NC_014734.1 | Paludibacter propionicigenes WB4 |
| 258 | 7333484 | 7333678 | - | NZ_CP048222.1 | Rhodocytophaga rosea |
| 259 | 2116044 | 2116241 | - | NZ_CP017253.2 | Clostridium taeniosporum |
| 260 | 3776360 | 3776557 | + | NZ_CP029186.1 | Flavobacterium album |
| 261 | 722047 | 722244 | + | NC_014011.1 | Aminobacterium colombiense DSM 12261 |
| 262 | 1892060 | 1892257 | + | NZ_AP022508.1 | Enterobacter bugandensis |
| 263 | 1886755 | 1886952 | + | NC_015968.1 | Enterobacter soli |
| 264 | 670145 | 670342 | + | NZ_CP038469.1 | Citrobacter tructae |
| 265 | 1130254 | 1130451 | + | NZ_CP017279.1 | Enterobacter ludwigii |
| 266 | 1579816 | 1580013 | - | NZ_CP045769.1 | Enterobacter cancerogenus |
| 267 | 252765 | 252962 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 268 | 4817536 | 4817733 | + | NZ_CP033744.1 | Citrobacter freundii |
| 269 | 3572120 | 3572317 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
| 270 | 3427488 | 3427685 | - | NZ_CP045205.1 | Citrobacter telavivensis |
| 271 | 1923989 | 1924186 | - | NZ_CP009302.1 | Berryella intestinalis |
| 272 | 581005 | 581202 | + | NZ_CP016359.1 | Gramella flava JLT2011 |
| 273 | 701912 | 702106 | + | NZ_CP029480.1 | Arcticibacterium luteifluviistationis |
| 274 | 2234291 | 2234485 | - | NZ_AP023049.1 | Alistipes indistinctus |
| 275 | 1419489 | 1419686 | + | NZ_CP015772.1 | Niabella ginsenosidivorans |
| 276 | 2757799 | 2757999 | - | NZ_CP051464.1 | Bacillus mojavensis |
| 277 | 2765564 | 2765764 | - | NZ_CP034943.1 | Bacillus subtilis subsp. spizizenii ATCC 6633 = JCM 2499 |
| 278 | 2831392 | 2831592 | - | NZ_CP013984.1 | Bacillus inaquosorum |
| 279 | 3342077 | 3342277 | + | NZ_CP029364.1 | Bacillus halotolerans |
| 280 | 2952615 | 2952815 | - | NC_000964.3 | Bacillus subtilis subsp. subtilis str. 168 |
| 281 | 3078798 | 3078992 | - | NZ_CP010429.1 | Spirosoma radiotolerans |
| 282 | 38468 | 38662 | + | NZ_CP050954.1 | Hymenobacter sp. BT18 |
| 283 | 1073607 | 1073804 | + | NC_010729.1 | Porphyromonas gingivalis ATCC 33277 |
| 284 | 71519 | 71716 | - | NZ_CP018153.1 | Gramella salexigens |
| 285 | 152762 | 152959 | + | NZ_CP028136.1 | Gramella fulva |
| 286 | 672544 | 672741 | - | NC_008571.1 | Gramella forsetii KT0803 |
| 287 | 1799580 | 1799777 | + | NZ_CP045851.1 | Actinomarinicola tropica |
| 288 | 1006041 | 1006238 | - | NC_017025.1 | Flavobacterium indicum GPTSA100-9 = DSM 17447 |
| 289 | 115068 | 115265 | + | NZ_AP017470.1 | Thermotomaculum hydrothermale |
| 290 | 255499 | 255696 | - | NZ_LR134503.1 | Kaistella jeonii |
| 291 | 3510060 | 3510257 | - | NZ_CP032157.1 | Paraflavitalea soli |
| 292 | 1272365 | 1272559 | - | NC_002971.4 | Coxiella burnetii RSA 493 |
| 293 | 321311 | 321508 | + | NZ_CP007035.1 | Niabella soli DSM 19437 |
| 294 | 89935 | 90129 | - | NZ_CP030041.1 | Echinicola strongylocentroti |
| 295 | 4324289 | 4324483 | - | NZ_CP040106.1 | Echinicola rosea |
| 296 | 609732 | 609932 | - | NZ_CP015108.1 | Sporosarcina ureae |
| 297 | 4060179 | 4060373 | + | NC_019904.1 | Echinicola vietnamensis DSM 17526 |
| 298 | 3224245 | 3224442 | + | NZ_CP040098.1 | Desulfoglaeba alkanexedens ALDC |
| 299 | 316259 | 316456 | - | NZ_CP045696.1 | Sodaliphilus pleomorphus |
| 300 | 1873930 | 1874136 | - | NZ_CP048877.1 | Thermosulfuriphilus ammonigenes |
| 301 | 271907 | 272104 | + | NC_018020.1 | Turneriella parva DSM 21527 |
| 302 | 2618933 | 2619133 | + | NC_022097.1 | Treponema pedis str. T A4 |
| 303 | 1871810 | 1872007 | - | NZ_CP072844.1 | Psychrosphaera aestuarii |
| 304 | 2102609 | 2102797 | - | NZ_AP019309.1 | Intestinibaculum porci |
| 305 | 1783750 | 1783944 | - | NZ_CP013189.1 | Pseudohongiella spirulinae |
| 306 | 1636003 | 1636200 | - | NZ_CP053351.1 | Winogradskyella schleiferi |
| 307 | 1323506 | 1323703 | - | NC_023035.1 | Salinispira pacifica |
| 308 | 1611338 | 1611529 | + | NZ_CP042909.1 | Thermosulfurimonas marina |
| 309 | 2472260 | 2472457 | - | NC_015687.1 | Clostridium acetobutylicum DSM 1731 |
| 310 | 1630850 | 1631047 | + | NZ_CP015401.2 | Bacteroides caecimuris |
| 311 | 3167314 | 3167511 | + | NZ_CP007202.1 | Siansivirga zeaxanthinifaciens CC-SAMT-1 |
| 312 | 1945384 | 1945581 | - | NZ_CP041637.1 | Formosa sediminum |
| 313 | 1378719 | 1378916 | - | NZ_CP053352.1 | Winogradskyella helgolandensis |
| 314 | 2094620 | 2094817 | - | NC_019978.1 | Halobacteroides halobius DSM 5150 |
| 315 | 127866 | 128060 | + | NC_017379.1 | Helicobacter pylori Puno135 |
| 316 | 546423 | 546614 | - | NC_015682.1 | Thermodesulfobacterium geofontis OPF15 |
| 317 | 280844 | 281041 | + | NC_018013.1 | Aequorivita sublithincola DSM 14238 |
| 318 | 459784 | 459981 | + | NZ_CP029463.1 | Flavobacterium sediminis |
| 319 | 1655725 | 1655916 | + | NC_015681.1 | Thermodesulfatator indicus DSM 15286 |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LT906477.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00453.20 | 1.0 | 316 | 49 | same-strand | Ribosomal protein L20 |
| 2 | PF00707.24 | 0.95 | 301 | 45 | same-strand | Translation initiation factor IF-3, C-terminal domain |
| 3 | PF00587.27 | 0.66 | 209 | 664 | same-strand | tRNA synthetase class II core domain (G, H, P, S and T) |
| 4 | PF03129.22 | 0.66 | 209 | 663.5 | same-strand | Anticodon binding domain |
| 5 | PF07973.16 | 0.66 | 208 | 664 | same-strand | Threonyl and Alanyl tRNA synthetase second additional domain |
| 6 | PF02824.23 | 0.62 | 196 | 666 | same-strand | TGS domain |
++ More..