Result : Q8RDV8
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 30S ribosomal protein S16 |
| NCBI Accession ID | AE009951.2 |
| Organism | Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / DSM 15643 / BCRC 10681 / CIP 101130 / JCM 8532 / KCTC 2640 / LMG 13131 / VPI 4355) |
| Left | 2049286 |
| Right | 2049549 |
| Strand | - |
| Nucleotide Sequence | ATGTTAAAATTAAGACTTACAAGATTAGGAGATAAAAAAAGACCTTCTTATAGAATAGTAGCTATGGAAGCTTTATCTAAAAGAGATGGTGGAGCAATAGCTTACTTAGGTAACTACTTCCCATTAGAAGATTCAAAAGTAGTATTAAAAGAAGAAGAAATCTTAAACTACTTAAAAAATGGTGCTCAACCTACAAGAACTGTAAAATCAATCTTGGTTAAAGCTGGATTATGGGCTAAATTTGAAGAATCTAAAAAGAAATAG |
| Sequence | MLKLRLTRLGDKKRPSYRIVAMEALSKRDGGAIAYLGNYFPLEDSKVVLKEEEILNYLKNGAQPTRTVKSILVKAGLWAKFEESKKK |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl00368. Profile Description: Ribosomal protein S16. This model describes ribosomal S16 of bacteria and organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification] |
| Pubmed ID | 11889109 |
| Domain | CDD:412339 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | Q8RDV8 |
| ORF Length (Amino Acid) | 87 |
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| Conservation Analysis |
No. of Species: 80
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2064153 | 2064416 | - | NZ_CP068114.1 | Fusobacterium canifelinum |
| 2 | 1011291 | 1011554 | + | NZ_CP024699.1 | Fusobacterium pseudoperiodonticum |
| 3 | 1024873 | 1025136 | + | NZ_CP013336.1 | Fusobacterium hwasookii ChDC F206 |
| 4 | 2038960 | 2039223 | - | NZ_LN831027.1 | Fusobacterium nucleatum subsp. polymorphum |
| 5 | 509956 | 510219 | - | NZ_CP028103.1 | Fusobacterium varium ATCC 27725 |
| 6 | 2025337 | 2025600 | + | NZ_CP028105.1 | Fusobacterium ulcerans |
| 7 | 842158 | 842421 | + | NZ_CP028102.1 | Fusobacterium mortiferum ATCC 9817 |
| 8 | 735529 | 735792 | + | NZ_CP028106.1 | Fusobacterium gonidiaformans ATCC 25563 |
| 9 | 1492296 | 1492559 | - | NC_014632.1 | Ilyobacter polytropus DSM 2926 |
| 10 | 877057 | 877320 | + | NZ_CP028107.1 | Fusobacterium necrophorum subsp. funduliforme |
| 11 | 1763839 | 1764108 | - | NZ_AP019827.1 | Leptotrichia shahii |
| 12 | 441926 | 442195 | + | NZ_AP019829.2 | Leptotrichia wadei |
| 13 | 576560 | 576829 | - | NC_013192.1 | Leptotrichia buccalis C-1013-b |
| 14 | 1898926 | 1899195 | - | NZ_AP019846.1 | Leptotrichia hongkongensis |
| 15 | 707993 | 708262 | + | NZ_AP019845.1 | Leptotrichia trevisanii |
| 16 | 1740158 | 1740430 | - | NZ_AP019822.1 | Pseudoleptotrichia goodfellowii |
| 17 | 1595697 | 1595963 | - | NC_013515.1 | Streptobacillus moniliformis DSM 12112 |
| 18 | 428052 | 428297 | + | NZ_CP014699.1 | Streptococcus pantholopis |
| 19 | 855402 | 855647 | + | NC_008525.1 | Pediococcus pentosaceus ATCC 25745 |
| 20 | 895383 | 895628 | + | NZ_CP053421.1 | Pediococcus acidilactici |
| 21 | 1951189 | 1951404 | + | NZ_CP012294.1 | Pediococcus damnosus |
| 22 | 1492753 | 1492998 | - | NZ_AP024085.1 | Faecalibacillus intestinalis |
| 23 | 667863 | 668111 | + | NZ_CP011403.1 | Ligilactobacillus salivarius str. Ren |
| 24 | 1502814 | 1503062 | - | NZ_CP018180.1 | Liquorilactobacillus nagelii |
| 25 | 2591519 | 2591764 | + | NZ_CP037940.1 | Weissella cryptocerci |
| 26 | 789071 | 789301 | - | NZ_LR215023.1 | Mycoplasma iowae |
| 27 | 766359 | 766604 | + | NZ_CP019981.1 | Pediococcus inopinatus |
| 28 | 2369952 | 2370200 | + | NZ_CP018796.1 | Lentilactobacillus parabuchneri |
| 29 | 1459617 | 1459862 | - | NZ_CP031733.1 | Streptococcus chenjunshii |
| 30 | 1097368 | 1097613 | + | NZ_CP030105.1 | Lactiplantibacillus plantarum |
| 31 | 1714573 | 1714818 | + | NZ_CP032757.1 | Lactiplantibacillus pentosus |
| 32 | 1837268 | 1837516 | + | NZ_CP018906.1 | Lentilactobacillus curieae |
| 33 | 1102829 | 1103077 | + | NZ_LS483405.1 | Levilactobacillus brevis |
| 34 | 2098625 | 2098873 | - | NZ_CP029971.1 | Lentilactobacillus kefiri |
| 35 | 2881687 | 2881935 | - | NZ_CP014912.1 | Secundilactobacillus paracollinoides |
| 36 | 1928728 | 1928979 | + | NZ_CP023392.1 | Lactococcus raffinolactis |
| 37 | 1291877 | 1292125 | - | NZ_AP014612.1 | Streptococcus troglodytae |
| 38 | 1148374 | 1148619 | + | NZ_CP065637.1 | Lactococcus garvieae |
| 39 | 854699 | 854947 | + | NZ_CP047141.1 | Ligilactobacillus animalis |
| 40 | 1036727 | 1036972 | - | NC_016605.1 | Pediococcus claussenii ATCC BAA-344 |
| 41 | 1609149 | 1609394 | - | NC_022369.1 | Lactococcus lactis subsp. cremoris KW2 |
| 42 | 1206135 | 1206380 | - | NZ_CP032627.1 | Lactococcus allomyrinae |
| 43 | 1444643 | 1444888 | - | NZ_CP070872.1 | Lactococcus taiwanensis |
| 44 | 846474 | 846719 | + | NZ_LS483383.1 | Streptococcus cristatus ATCC 51100 |
| 45 | 795857 | 796105 | - | NZ_CP013237.1 | Streptococcus mutans |
| 46 | 1040747 | 1040992 | - | NZ_CP017326.1 | Weissella soli |
| 47 | 265238 | 265483 | + | NZ_CP014835.1 | Streptococcus halotolerans |
| 48 | 894199 | 894444 | + | NZ_CP012805.1 | Streptococcus anginosus |
| 49 | 1047061 | 1047309 | + | NZ_AP014680.1 | Paucilactobacillus hokkaidonensis JCM 18461 |
| 50 | 1616917 | 1617165 | + | NZ_CP043405.1 | Streptococcus ratti |
| 51 | 854831 | 855076 | + | NZ_CP034543.1 | Streptococcus periodonticum |
| 52 | 1478145 | 1478390 | - | NC_017581.1 | Streptococcus thermophilus JIM 8232 |
| 53 | 1506548 | 1506793 | - | NZ_LR134275.1 | Streptococcus vestibularis |
| 54 | 1197305 | 1197556 | - | NZ_CP017194.1 | Lactococcus carnosus |
| 55 | 1547192 | 1547473 | - | NC_011661.1 | Dictyoglomus turgidum DSM 6724 |
| 56 | 1239128 | 1239379 | - | NZ_CP017195.1 | Lactococcus paracarnosus |
| 57 | 1181299 | 1181544 | - | NZ_CP068170.1 | Erysipelatoclostridium ramosum |
| 58 | 1362803 | 1363084 | - | NC_011297.1 | Dictyoglomus thermophilum H-6-12 |
| 59 | 747085 | 747300 | + | NZ_CP027563.1 | Weissella confusa |
| 60 | 1101243 | 1101488 | - | NZ_LR594050.1 | Streptococcus porcinus |
| 61 | 751547 | 751795 | + | NZ_CP023074.1 | Enterococcus thailandicus |
| 62 | 1078815 | 1079060 | + | NZ_AP019309.1 | Intestinibaculum porci |
| 63 | 573155 | 573400 | - | NZ_CP014163.1 | Aerococcus urinaehominis |
| 64 | 1461538 | 1461804 | - | NZ_CP065712.1 | Staphylococcus auricularis |
| 65 | 508985 | 509230 | + | NZ_CP014161.1 | Aerococcus urinae |
| 66 | 1628912 | 1629178 | - | NZ_CP064056.1 | Staphylococcus lloydii |
| 67 | 1040598 | 1040843 | + | NZ_CP014159.1 | Aerococcus christensenii |
| 68 | 1712062 | 1712337 | + | NZ_CP066042.1 | Staphylococcus saccharolyticus |
| 69 | 793804 | 794049 | - | NZ_CP035807.1 | Thiospirochaeta perfilievii |
| 70 | 796718 | 796948 | - | NC_011374.1 | Ureaplasma urealyticum serovar 10 str. ATCC 33699 |
| 71 | 2287928 | 2288146 | - | NZ_AP017378.1 | Desulfovibrio ferrophilus |
| 72 | 842158 | 842391 | + | NC_014844.1 | Pseudodesulfovibrio aespoeensis Aspo-2 |
| 73 | 5302114 | 5302362 | + | NC_010296.1 | Microcystis aeruginosa NIES-843 |
| 74 | 208986 | 209234 | - | NC_019776.1 | Cyanobacterium aponinum PCC 10605 |
| 75 | 1609684 | 1609950 | - | NZ_LR134089.1 | Staphylococcus saprophyticus |
| 76 | 389926 | 390177 | + | NZ_AP018202.1 | Thermostichus vulcanus NIES-2134 |
| 77 | 35569 | 35820 | - | NC_004113.1 | Thermosynechococcus vestitus BP-1 |
| 78 | 1025450 | 1025698 | + | NZ_CP018092.1 | Synechococcus lividus PCC 6715 |
| 79 | 4139676 | 4139930 | + | NC_009925.1 | Acaryochloris marina MBIC11017 |
| 80 | 2993856 | 2994140 | - | NC_017243.1 | Brachyspira intermedia PWS/A |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP014699.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF13083.8 | 0.62 | 50 | 16.0 | same-strand | KH domain |
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