Result : Q8K9F0
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | DNA-binding protein Fis |
| NCBI Accession ID | AE013218.1 |
| Organism | Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) |
| Left | 437843 |
| Right | 438142 |
| Strand | - |
| Nucleotide Sequence | ATGTCAGAAGAGTCAATGGATACAGGATTTTTAGTTATTAATACTAAAGATAAACAAGATAAAACTGTAAAAAAACCTTTACGTATATTAATAAAAAAATCCTTAGAAAATTATTTTTTACATTTAGATAAAAGCCAATGTGTCAGTAATCTATATCAATTAGTTTTATCTGAACTAGAACAACCATTATTAGACATAATAATGCAACATACGCGCGGAAATCAAACACGAGCCGCTTCTATTATGGGTATTAATCGAAGTACCTTGCGAAAAAAATTGAAAAGGTATGGTATGAATTAA |
| Sequence | MSEESMDTGFLVINTKDKQDKTVKKPLRILIKKSLENYFLHLDKSQCVSNLYQLVLSELEQPLLDIIMQHTRGNQTRAASIMGINRSTLRKKLKRYGMN |
| Source of smORF | Swiss-Prot |
| Function | Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters. {ECO:0000255|HAMAP-Rule:MF_00166}. |
| Pubmed ID | 12089438 |
| Domain | CDD:419882 |
| Functional Category | DNA-binding |
| Uniprot ID | Q8K9F0 |
| ORF Length (Amino Acid) | 99 |
++ More..
| Conservation Analysis |
No. of Species: 256
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3580071 | 3580367 | + | NZ_CP034148.1 | Pantoea agglomerans |
| 2 | 491233 | 491529 | - | NZ_CP045720.1 | Pantoea eucalypti |
| 3 | 501329 | 501625 | - | NZ_CP038853.1 | Pantoea vagans |
| 4 | 2955211 | 2955507 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 5 | 2406488 | 2406784 | + | NZ_CP049115.1 | Pantoea stewartii |
| 6 | 489825 | 490121 | - | NC_017554.1 | Pantoea ananatis PA13 |
| 7 | 458410 | 458706 | - | NZ_CP050508.1 | Raoultella terrigena |
| 8 | 578197 | 578493 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
| 9 | 3249076 | 3249372 | + | NZ_CP029185.2 | Limnobaculum parvum |
| 10 | 3436606 | 3436902 | + | NZ_LR134531.1 | Pragia fontium |
| 11 | 3685923 | 3686219 | + | NZ_CP034752.1 | Jinshanibacter zhutongyuii |
| 12 | 533989 | 534285 | - | NZ_CP006569.1 | Sodalis praecaptivus |
| 13 | 1814589 | 1814885 | + | NZ_CP011078.1 | Yersinia ruckeri |
| 14 | 2498664 | 2498960 | + | NZ_CP009787.1 | Yersinia rohdei |
| 15 | 2259631 | 2259927 | + | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 16 | 754059 | 754355 | + | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 17 | 437217 | 437513 | - | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 18 | 4223489 | 4223785 | + | NZ_CP043727.1 | Yersinia canariae |
| 19 | 448704 | 449000 | - | NZ_CP011118.1 | Yersinia enterocolitica |
| 20 | 4285001 | 4285297 | + | NZ_CP032487.1 | Yersinia hibernica |
| 21 | 1115879 | 1116175 | + | NZ_CP007230.1 | Yersinia similis |
| 22 | 300900 | 301196 | - | NZ_CP046293.1 | Yersinia intermedia |
| 23 | 3147740 | 3148036 | + | NZ_LS483470.1 | Leminorella richardii |
| 24 | 2075575 | 2075871 | - | NZ_CP026364.1 | Proteus hauseri |
| 25 | 485387 | 485683 | - | NZ_CP047349.1 | Proteus terrae subsp. cibarius |
| 26 | 3959637 | 3959933 | - | NC_010554.1 | Proteus mirabilis HI4320 |
| 27 | 683084 | 683380 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 28 | 2095098 | 2095394 | - | NZ_CP023706.1 | Edwardsiella tarda |
| 29 | 455033 | 455329 | - | NZ_LN907827.1 | Erwinia gerundensis |
| 30 | 324333 | 324629 | - | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 31 | 386228 | 386524 | - | NZ_CP016043.1 | Edwardsiella hoshinae |
| 32 | 3402671 | 3402967 | + | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 33 | 324262 | 324558 | - | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 34 | 3663849 | 3664145 | + | NZ_CP023567.1 | Erwinia pyrifoliae |
| 35 | 340874 | 341170 | - | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 36 | 1310820 | 1311116 | + | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 37 | 1154110 | 1154406 | + | NZ_CP019706.1 | Pantoea alhagi |
| 38 | 436392 | 436688 | - | NZ_CP061511.1 | Mixta calida |
| 39 | 3047352 | 3047648 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 40 | 3555284 | 3555580 | + | NZ_LS483422.1 | Providencia heimbachae |
| 41 | 3767525 | 3767821 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 42 | 383866 | 384162 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 43 | 2154616 | 2154912 | - | NZ_CP042941.1 | Atlantibacter hermannii |
| 44 | 399064 | 399360 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 45 | 3644801 | 3645097 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 46 | 412130 | 412426 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 47 | 394023 | 394319 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 48 | 3914614 | 3914910 | + | NZ_LR134340.1 | Escherichia marmotae |
| 49 | 1988705 | 1989001 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 50 | 148507 | 148803 | - | NZ_CP015581.1 | Tatumella citrea |
| 51 | 1406618 | 1406914 | + | NZ_CP053416.1 | Salmonella bongori |
| 52 | 510892 | 511188 | - | NZ_CP026377.1 | Mixta gaviniae |
| 53 | 433967 | 434263 | - | NZ_AP023184.1 | Buttiauxella agrestis |
| 54 | 430487 | 430783 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 55 | 2332644 | 2332940 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 56 | 3398842 | 3399138 | + | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 57 | 4160872 | 4161168 | + | NZ_AP022508.1 | Enterobacter bugandensis |
| 58 | 3411271 | 3411567 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 59 | 3391382 | 3391678 | + | NZ_AP014857.1 | Escherichia albertii |
| 60 | 441380 | 441676 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 61 | 494009 | 494305 | - | NZ_CP045845.1 | Kluyvera intermedia |
| 62 | 4259963 | 4260259 | - | NZ_CP028271.1 | Mixta intestinalis |
| 63 | 4140117 | 4140413 | + | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 64 | 4234840 | 4235136 | + | NZ_CP027986.1 | Enterobacter sichuanensis |
| 65 | 4309735 | 4310031 | + | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 66 | 4253773 | 4254069 | + | NZ_CP017184.1 | Enterobacter roggenkampii |
| 67 | 271697 | 271993 | - | NZ_LR134201.1 | Cedecea lapagei |
| 68 | 488060 | 488356 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 69 | 4251287 | 4251583 | + | NC_015968.1 | Enterobacter soli |
| 70 | 3045764 | 3046060 | - | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 71 | 3867692 | 3867988 | - | NZ_CP038469.1 | Citrobacter tructae |
| 72 | 4357801 | 4358097 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 73 | 4148338 | 4148634 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 74 | 3556269 | 3556565 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 75 | 4092803 | 4093099 | - | NZ_CP045769.1 | Enterobacter cancerogenus |
| 76 | 2659329 | 2659625 | + | NZ_CP016337.1 | Kosakonia sacchari |
| 77 | 4409403 | 4409699 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 78 | 2869371 | 2869667 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 79 | 2213213 | 2213509 | + | NZ_CP033744.1 | Citrobacter freundii |
| 80 | 1000255 | 1000551 | + | NZ_CP065640.1 | Serratia rubidaea |
| 81 | 3592992 | 3593288 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 82 | 4555242 | 4555538 | + | NC_014306.1 | Erwinia billingiae Eb661 |
| 83 | 474825 | 475121 | - | NZ_CP071320.1 | Serratia ureilytica |
| 84 | 1694973 | 1695269 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
| 85 | 4589882 | 4590178 | + | NZ_CP043318.1 | Enterobacter chengduensis |
| 86 | 3931224 | 3931520 | + | NZ_CP016948.1 | Serratia surfactantfaciens |
| 87 | 459967 | 460263 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 88 | 4672857 | 4673153 | + | NZ_LT906479.1 | Serratia ficaria |
| 89 | 267001 | 267297 | - | NZ_CP023525.1 | Cedecea neteri |
| 90 | 456079 | 456375 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 91 | 4721179 | 4721475 | + | NZ_CP038662.1 | Serratia nematodiphila |
| 92 | 452150 | 452446 | - | NZ_CP041247.1 | Raoultella electrica |
| 93 | 4777870 | 4778166 | + | NZ_CP048784.1 | Serratia liquefaciens |
| 94 | 4818868 | 4819164 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 95 | 4800127 | 4800423 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 96 | 4817208 | 4817504 | + | NZ_LR134494.1 | Serratia quinivorans |
| 97 | 395976 | 396272 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 98 | 487115 | 487411 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 99 | 1014618 | 1014914 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 100 | 4891507 | 4891803 | + | NC_015567.1 | Serratia plymuthica AS9 |
| 101 | 5433104 | 5433400 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 102 | 1481317 | 1481613 | - | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 103 | 1226094 | 1226390 | + | NZ_CP026047.1 | Raoultella planticola |
| 104 | 4146359 | 4146655 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 105 | 5176759 | 5177055 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 106 | 465834 | 466130 | - | NZ_CP054254.1 | Klebsiella variicola |
| 107 | 3042673 | 3042969 | - | NZ_CP014136.1 | Gibbsiella quercinecans |
| 108 | 490381 | 490677 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 109 | 4836837 | 4837133 | + | NZ_CP015113.1 | Kosakonia radicincitans |
| 110 | 1200932 | 1201228 | + | NZ_CP011254.1 | Serratia fonticola |
| 111 | 538982 | 539278 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 112 | 1610634 | 1610930 | - | NZ_CP023536.1 | Providencia alcalifaciens |
| 113 | 3690565 | 3690861 | + | NZ_CP048796.1 | Providencia vermicola |
| 114 | 1511920 | 1512216 | - | NZ_CP029736.1 | Providencia rettgeri |
| 115 | 3076533 | 3076829 | + | NZ_CP031123.2 | Providencia huaxiensis |
| 116 | 4776705 | 4777001 | + | NC_005126.1 | Photorhabdus laumondii subsp. laumondii TTO1 |
| 117 | 1550454 | 1550750 | + | NZ_CP046793.1 | Vibrio metschnikovii |
| 118 | 3262556 | 3262852 | + | NZ_FO704551.1 | Xenorhabdus poinarii G6 |
| 119 | 3755758 | 3756054 | + | NZ_FO704550.1 | Xenorhabdus doucetiae |
| 120 | 3667838 | 3668134 | - | NC_013892.1 | Xenorhabdus bovienii SS-2004 |
| 121 | 2801997 | 2802293 | + | NZ_CP060401.1 | Xenorhabdus nematophila |
| 122 | 452439 | 452735 | - | NZ_CP072455.1 | Xenorhabdus budapestensis |
| 123 | 3751860 | 3752156 | - | NZ_CP016176.1 | Xenorhabdus hominickii |
| 124 | 4315928 | 4316224 | + | NC_012962.1 | Photorhabdus asymbiotica |
| 125 | 2977776 | 2978072 | - | NZ_CP011104.1 | Photorhabdus thracensis |
| 126 | 3078449 | 3078745 | + | NC_011312.1 | Aliivibrio salmonicida LFI1238 |
| 127 | 309822 | 310118 | - | NZ_CP038498.1 | Pectobacterium punjabense |
| 128 | 1308728 | 1309024 | + | NZ_CP047495.1 | Pectobacterium brasiliense |
| 129 | 4476098 | 4476394 | + | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 130 | 4540662 | 4540958 | + | NZ_CP051652.1 | Pectobacterium carotovorum |
| 131 | 303182 | 303478 | - | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 132 | 4634971 | 4635267 | + | NZ_CP065044.1 | Pectobacterium aroidearum |
| 133 | 305963 | 306259 | - | NZ_CP034938.1 | Pectobacterium odoriferum |
| 134 | 4066969 | 4067265 | - | NZ_CP017482.1 | Pectobacterium polaris |
| 135 | 3783964 | 3784260 | + | NZ_CP015749.1 | Pectobacterium parmentieri |
| 136 | 2065461 | 2065757 | - | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 137 | 3879284 | 3879580 | + | NZ_CP014137.1 | Brenneria goodwinii |
| 138 | 1660175 | 1660471 | - | NZ_CP065150.1 | Vibrio kanaloae |
| 139 | 3107239 | 3107535 | + | NC_011753.2 | Vibrio atlanticus |
| 140 | 184580 | 184876 | - | NZ_CP039700.1 | Vibrio cyclitrophicus |
| 141 | 3043766 | 3044062 | + | NZ_LT960611.1 | Vibrio tapetis subsp. tapetis |
| 142 | 4160219 | 4160515 | + | NZ_CP050150.1 | Hafnia alvei |
| 143 | 3166384 | 3166680 | + | NZ_CP067057.1 | Rahnella aceris |
| 144 | 2780460 | 2780756 | - | NZ_CP035688.1 | Vibrio metoecus |
| 145 | 207518 | 207814 | - | NZ_CP033078.1 | Vibrio zhugei |
| 146 | 177344 | 177640 | - | NZ_AP014524.1 | Vibrio cholerae MS6 |
| 147 | 227586 | 227882 | - | NZ_AP019651.1 | Vibrio taketomensis |
| 148 | 249161 | 249457 | - | NZ_CP047475.1 | Vibrio astriarenae |
| 149 | 184509 | 184805 | - | NZ_CP032093.1 | Vibrio alfacsensis |
| 150 | 2917398 | 2917694 | + | NZ_CP045350.1 | Vibrio aquimaris |
| 151 | 2550956 | 2551252 | + | NZ_CP014035.2 | Vibrio fluvialis |
| 152 | 12945 | 13241 | - | NZ_CP016414.1 | Vibrio scophthalmi |
| 153 | 2668443 | 2668739 | + | NZ_AP019657.1 | Vibrio ponticus |
| 154 | 3085974 | 3086270 | - | NZ_CP009977.1 | Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 |
| 155 | 3186946 | 3187242 | + | NZ_CP044069.1 | Vibrio vulnificus |
| 156 | 635616 | 635912 | - | NC_013456.1 | Vibrio antiquarius |
| 157 | 3038832 | 3039128 | + | NZ_CP030788.1 | Vibrio campbellii |
| 158 | 701739 | 702035 | - | NZ_CP040990.1 | Vibrio furnissii |
| 159 | 209175 | 209471 | - | NZ_CP031781.1 | Vibrio parahaemolyticus |
| 160 | 10778 | 11074 | - | NZ_CP018312.1 | Vibrio rotiferianus |
| 161 | 248191 | 248487 | - | NZ_AP014635.1 | Vibrio tritonius |
| 162 | 2038652 | 2038948 | - | NZ_CP019959.1 | Vibrio owensii |
| 163 | 3614856 | 3615152 | + | NZ_CP009467.1 | Vibrio harveyi |
| 164 | 2462034 | 2462330 | - | NZ_CP025792.1 | Vibrio jasicida 090810c |
| 165 | 94803 | 95099 | + | NZ_CP070624.1 | Photobacterium damselae subsp. damselae |
| 166 | 1505479 | 1505775 | - | NZ_CP014056.2 | Grimontia hollisae |
| 167 | 182203 | 182499 | - | NZ_CP009354.1 | Vibrio tubiashii ATCC 19109 |
| 168 | 2640809 | 2641105 | + | NZ_CP040021.1 | Salinivibrio kushneri |
| 169 | 3575160 | 3575456 | + | NZ_CP065534.1 | Lonsdalea populi |
| 170 | 1367876 | 1368172 | - | NZ_CP023009.1 | Lonsdalea britannica |
| 171 | 186496 | 186792 | - | NZ_CP034035.1 | Brenneria rubrifaciens |
| 172 | 4093220 | 4093516 | + | NZ_CP042220.2 | Dickeya poaceiphila |
| 173 | 350359 | 350655 | - | NZ_LT615367.1 | Dickeya aquatica |
| 174 | 4275744 | 4276040 | + | NC_012880.1 | Musicola paradisiaca Ech703 |
| 175 | 309356 | 309652 | - | NZ_CP025799.1 | Dickeya zeae |
| 176 | 4347761 | 4348057 | + | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 177 | 298342 | 298638 | - | NZ_CP031560.1 | Dickeya dianthicola |
| 178 | 2466508 | 2466804 | - | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 179 | 307385 | 307681 | - | NC_014500.1 | Dickeya dadantii 3937 |
| 180 | 2472768 | 2473064 | + | NZ_CP009460.1 | Dickeya fangzhongdai |
| 181 | 3482044 | 3482340 | + | NZ_CP046268.1 | Vibrio spartinae |
| 182 | 115323 | 115619 | + | NZ_CP005974.1 | Photobacterium gaetbulicola Gung47 |
| 183 | 3287488 | 3287784 | + | NZ_CP071325.1 | Photobacterium ganghwense |
| 184 | 2612996 | 2613292 | + | NZ_CP022741.1 | Vibrio qinghaiensis |
| 185 | 2668572 | 2668868 | + | NZ_AP018685.1 | Vibrio rumoiensis |
| 186 | 2391183 | 2391479 | + | NZ_AP018689.1 | Vibrio aphrogenes |
| 187 | 739554 | 739850 | - | NZ_CP022355.1 | Paraphotobacterium marinum |
| 188 | 805612 | 805908 | - | NZ_CP040449.1 | Aeromonas simiae |
| 189 | 827051 | 827347 | - | NZ_LR134376.1 | Aeromonas encheleia |
| 190 | 3978040 | 3978336 | - | NZ_CP044060.1 | Aeromonas veronii |
| 191 | 4379185 | 4379481 | - | NZ_CP051883.1 | Aeromonas salmonicida |
| 192 | 4233149 | 4233445 | - | NZ_CP065745.1 | Aeromonas allosaccharophila |
| 193 | 793690 | 793986 | - | NZ_AP022188.1 | Aeromonas media |
| 194 | 3984224 | 3984520 | + | NZ_CP050851.1 | Aeromonas hydrophila |
| 195 | 3567234 | 3567485 | + | NZ_CP044399.1 | Moritella marina ATCC 15381 |
| 196 | 2643744 | 2644043 | + | NZ_LS483250.1 | Moritella yayanosii |
| 197 | 859058 | 859357 | - | NZ_CP012621.1 | Zobellella denitrificans |
| 198 | 2103809 | 2104105 | + | NZ_CP007445.1 | Gilliamella apicola |
| 199 | 19557 | 19856 | - | NZ_CP009610.1 | Haemophilus influenzae |
| 200 | 816867 | 817163 | - | NZ_CP018804.1 | Histophilus somni |
| 201 | 44120 | 44419 | - | NZ_LR134167.1 | Avibacterium volantium |
| 202 | 703559 | 703858 | - | NZ_LS483458.1 | Haemophilus haemolyticus |
| 203 | 832130 | 832426 | + | NZ_LS483443.1 | Aggregatibacter segnis ATCC 33393 |
| 204 | 375746 | 376042 | - | NZ_LR134510.1 | Actinobacillus delphinicola |
| 205 | 101270 | 101569 | - | NZ_CP015031.1 | Basfia succiniciproducens |
| 206 | 496047 | 496346 | - | NC_006300.1 | [Mannheimia] succiniciproducens MBEL55E |
| 207 | 2293219 | 2293515 | - | NZ_LR134327.1 | Aggregatibacter aphrophilus ATCC 33389 |
| 208 | 1844226 | 1844525 | - | NZ_CP016605.1 | Bisgaardia hudsonensis |
| 209 | 1938593 | 1938889 | + | NZ_CP016180.1 | Pasteurella skyensis |
| 210 | 1349972 | 1350268 | + | NC_011852.1 | Glaesserella parasuis SH0165 |
| 211 | 1824332 | 1824631 | - | NZ_CP040863.1 | Rodentibacter heylii |
| 212 | 862650 | 862946 | - | NZ_CP009056.1 | Frischella perrara |
| 213 | 385845 | 386099 | - | NZ_CP028926.1 | Pasteurella multocida |
| 214 | 1303533 | 1303787 | - | NZ_LT906448.1 | Pasteurella dagmatis |
| 215 | 884664 | 884918 | + | NZ_LT906463.1 | Haemophilus pittmaniae |
| 216 | 19207 | 19506 | - | NZ_LS483429.1 | Haemophilus aegyptius |
| 217 | 1469056 | 1469355 | + | NZ_CP021376.1 | Oceanisphaera avium |
| 218 | 2645687 | 2645986 | - | NZ_CP021377.1 | Oceanisphaera profunda |
| 219 | 2763620 | 2763919 | + | NC_012691.1 | Tolumonas auensis DSM 9187 |
| 220 | 3938831 | 3939139 | - | NZ_CP051180.1 | Ferrimonas lipolytica |
| 221 | 498391 | 498699 | - | NC_014541.1 | Ferrimonas balearica DSM 9799 |
| 222 | 3955079 | 3955348 | - | NZ_CP028897.1 | Dongshaea marina |
| 223 | 1096440 | 1096736 | + | NZ_CP015425.1 | [Haemophilus] ducreyi |
| 224 | 1340468 | 1340764 | - | NZ_CP007715.1 | Actinobacillus equuli subsp. equuli |
| 225 | 1351375 | 1351671 | - | NZ_CP009159.1 | Actinobacillus suis ATCC 33415 |
| 226 | 1671697 | 1671951 | - | NZ_CP016604.1 | Otariodibacter oris |
| 227 | 632238 | 632534 | - | NZ_CP006944.1 | Mannheimia varigena USDA-ARS-USMARC-1312 |
| 228 | 1013015 | 1013311 | - | NZ_CP061280.1 | Mannheimia bovis |
| 229 | 2007115 | 2007411 | + | NC_021883.1 | Mannheimia haemolytica USMARC_2286 |
| 230 | 1995100 | 1995354 | - | NZ_CP015029.1 | Frederiksenia canicola |
| 231 | 2076392 | 2076688 | + | NZ_CP046531.1 | Mannheimia ovis |
| 232 | 2105462 | 2105758 | + | NZ_CP055305.1 | Mannheimia pernigra |
| 233 | 212979 | 213233 | + | NZ_CP030753.1 | Actinobacillus pleuropneumoniae |
| 234 | 1080587 | 1080841 | + | NZ_CP029206.1 | Actinobacillus porcitonsillarum |
| 235 | 1611544 | 1611840 | - | NZ_CP006954.1 | Bibersteinia trehalosi USDA-ARS-USMARC-188 |
| 236 | 2375510 | 2375797 | + | NZ_CP020465.1 | Cognaticolwellia beringensis |
| 237 | 3807929 | 3808192 | + | NZ_CP019650.1 | Microbulbifer agarilyticus |
| 238 | 2129776 | 2130069 | - | NZ_CP041660.1 | Catenovulum sediminis |
| 239 | 521763 | 522053 | - | NZ_CP011039.1 | Pseudoalteromonas spongiae UST010723-006 |
| 240 | 1252069 | 1252359 | - | NZ_CP009888.1 | Pseudoalteromonas piratica |
| 241 | 1964890 | 1965180 | - | NZ_CP072425.1 | Pseudoalteromonas viridis |
| 242 | 751677 | 751967 | - | NZ_CP072844.1 | Psychrosphaera aestuarii |
| 243 | 3197813 | 3198103 | + | NZ_CP013187.1 | Pseudoalteromonas phenolica |
| 244 | 3007769 | 3008059 | + | NZ_CP011041.1 | Pseudoalteromonas tetraodonis |
| 245 | 2989309 | 2989599 | + | NZ_CP011030.1 | Pseudoalteromonas issachenkonii |
| 246 | 3163843 | 3164133 | + | NZ_CP033065.1 | Pseudoalteromonas agarivorans |
| 247 | 3214187 | 3214477 | + | NZ_CP027523.1 | Pseudoalteromonas carrageenovora |
| 248 | 647801 | 648091 | - | NZ_CP032090.1 | Pseudoalteromonas donghaensis |
| 249 | 3242930 | 3243220 | + | NZ_CP023464.1 | Pseudoalteromonas atlantica |
| 250 | 3303509 | 3303799 | + | NZ_CP011028.1 | Pseudoalteromonas espejiana DSM 9414 |
| 251 | 3453458 | 3453748 | + | NZ_CP011025.1 | Pseudoalteromonas arctica A 37-1-2 |
| 252 | 2516989 | 2517279 | + | NZ_CP031961.1 | Pseudoalteromonas tunicata |
| 253 | 2329735 | 2330025 | - | NZ_CP019628.1 | Pseudoalteromonas aliena |
| 254 | 359309 | 359599 | - | NC_007481.1 | Pseudoalteromonas translucida |
| 255 | 389034 | 389324 | - | NZ_CP011036.1 | Pseudoalteromonas nigrifaciens |
| 256 | 352617 | 352922 | - | NZ_CP022272.1 | Shewanella marisflavi |
| 257 | 374408 | 374713 | - | NC_009092.1 | Shewanella loihica PV-4 |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP034148.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF06196.14 | 0.66 | 168 | 3769 | same-strand | Protein of unknown function (DUF997) |
| 2 | PF00474.19 | 0.66 | 170 | 2333 | same-strand | Sodium:solute symporter family |
| 3 | PF06325.15 | 0.9 | 231 | 1341.0 | same-strand | Ribosomal protein L11 methyltransferase (PrmA) |
| 4 | PF01207.19 | 1.0 | 256 | 24 | same-strand | Dihydrouridine synthase (Dus) |
++ More..