Result : Q8G5K1
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Transcriptional regulator WhiB2 |
| NCBI Accession ID | AE014295.3 |
| Organism | Bifidobacterium longum (strain NCC 2705) |
| Left | 829571 |
| Right | 829870 |
| Strand | - |
| Nucleotide Sequence | ATGTGGGGTGTGGTCGACGATTCAGCCGAAGAGCCATGGCACGAATTGTGGGGACTATTCCGACCTGATGGCGATGTATCTTGGCAGCACAAGGCGTTGTGCGCGCAAACCGATCCGGAGGCGTTCTTCCCGGAAAAGGGGGGCTCGACCCGTGATGCCAAACGTGTGTGCGCAAAATGCGAAGTGCGTGAGCAATGCCTGAAATGGGCCATCGACCATGATGAGCGATTCGGTATTTGGGGTGGCATGAGCGAGCGCGAACGCCGTCGATATAAGCGAGAGCACCGGGAGCGGGCGTAG |
| Sequence | MWGVVDDSAEEPWHELWGLFRPDGDVSWQHKALCAQTDPEAFFPEKGGSTRDAKRVCAKCEVREQCLKWAIDHDERFGIWGGMSERERRRYKREHRERA |
| Source of smORF | Swiss-Prot |
| Function | Acts as a transcriptional regulator. Probably redox-responsive. The apo- but not holo-form probably binds DNA (By similarity). {ECO:0000250}. |
| Pubmed ID | 12381787 22609519 |
| Domain | CDD:396843 |
| Functional Category | DNA-binding_and_Metal-binding |
| Uniprot ID | Q8G5K1 |
| ORF Length (Amino Acid) | 99 |
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| Conservation Analysis |
No. of Species: 88
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 816091 | 816390 | + | NZ_CP026999.1 | Bifidobacterium longum |
| 2 | 868573 | 868872 | + | NZ_CP006712.1 | Bifidobacterium breve JCM 7017 |
| 3 | 877642 | 877941 | + | NZ_CP028341.1 | Bifidobacterium adolescentis |
| 4 | 897793 | 898092 | + | NZ_CP025199.1 | Bifidobacterium pseudocatenulatum |
| 5 | 835281 | 835580 | + | NZ_AP012325.1 | Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043 |
| 6 | 1702318 | 1702626 | - | NZ_AP012331.1 | Bifidobacterium scardovii JCM 12489 = DSM 13734 |
| 7 | 1311084 | 1311383 | - | NZ_AP012322.1 | Bifidobacterium angulatum DSM 20098 = JCM 7096 |
| 8 | 1009879 | 1010178 | + | NZ_AP012326.1 | Bifidobacterium dentium JCM 1195 = DSM 20436 |
| 9 | 2174159 | 2174458 | + | NZ_CP062948.1 | Bifidobacterium lemurum |
| 10 | 600316 | 600615 | - | NZ_CP062938.1 | Bifidobacterium eulemuris |
| 11 | 1579668 | 1579979 | + | NZ_CP025333.1 | Brevibacterium aurantiacum |
| 12 | 931640 | 931948 | + | NZ_CP022752.1 | Actinopolyspora erythraea |
| 13 | 845321 | 845620 | + | NZ_CP017812.1 | Boudabousia tangfeifanii |
| 14 | 5008137 | 5008421 | - | NZ_CP015163.1 | Amycolatopsis albispora |
| 15 | 609236 | 609484 | + | NZ_CP039247.1 | Corynebacterium endometrii |
| 16 | 2289693 | 2289956 | + | NZ_CP068168.1 | Corynebacterium amycolatum |
| 17 | 861328 | 861576 | - | NZ_CP014635.1 | Corynebacterium simulans |
| 18 | 719691 | 719939 | + | NZ_CP009246.1 | Corynebacterium flavescens |
| 19 | 10068400 | 10068645 | - | NZ_CP034550.1 | Saccharothrix syringae |
| 20 | 757402 | 757650 | + | NZ_CP010827.1 | Corynebacterium singulare |
| 21 | 722744 | 722992 | + | NC_012590.1 | Corynebacterium aurimucosum ATCC 700975 |
| 22 | 642974 | 643252 | + | NZ_CP011541.1 | Corynebacterium epidermidicanis |
| 23 | 2106352 | 2106609 | - | NZ_LT985188.1 | Micropruina glycogenica |
| 24 | 8421163 | 8421408 | - | NC_019673.1 | Saccharothrix espanaensis DSM 44229 |
| 25 | 642025 | 642273 | + | NZ_CP011311.1 | Corynebacterium camporealensis |
| 26 | 2008687 | 2008935 | - | NZ_LS483460.1 | Corynebacterium minutissimum |
| 27 | 652821 | 653084 | + | NZ_CP006841.1 | Corynebacterium lactis RW2-5 |
| 28 | 2177323 | 2177571 | - | NZ_LR698967.1 | Corynebacterium ammoniagenes |
| 29 | 618543 | 618791 | + | NZ_CP011545.1 | Corynebacterium testudinoris |
| 30 | 3386140 | 3386403 | - | NZ_CP029146.1 | Rhodococcus ruber |
| 31 | 2044273 | 2044521 | - | NZ_CP067012.1 | Corynebacterium kefirresidentii |
| 32 | 1798121 | 1798432 | - | NC_012704.1 | Corynebacterium kroppenstedtii DSM 44385 |
| 33 | 2142967 | 2143215 | - | NZ_CP009251.1 | Corynebacterium stationis |
| 34 | 4694685 | 4694936 | + | NZ_CP023698.1 | Streptomyces viridifaciens |
| 35 | 561269 | 561517 | + | NZ_CP026947.1 | Corynebacterium yudongzhengii |
| 36 | 2271289 | 2271549 | + | NZ_CP065682.1 | Brevibacterium casei |
| 37 | 3372347 | 3372634 | - | NC_013159.1 | Saccharomonospora viridis DSM 43017 |
| 38 | 688615 | 688863 | + | NZ_CP006764.1 | Corynebacterium doosanense CAU 212 = DSM 45436 |
| 39 | 631448 | 631738 | + | NZ_CP004353.1 | Corynebacterium vitaeruminis DSM 20294 |
| 40 | 2599303 | 2599566 | - | NZ_CP054938.1 | Streptomyces harbinensis |
| 41 | 1821185 | 1821475 | - | NZ_CP033898.1 | Corynebacterium pseudopelargi |
| 42 | 1822697 | 1822987 | - | NZ_CP035299.1 | Corynebacterium pelargi |
| 43 | 1988373 | 1988636 | - | NZ_CP009922.3 | Streptomyces xiamenensis |
| 44 | 781032 | 781280 | + | NC_020302.1 | Corynebacterium halotolerans YIM 70093 = DSM 44683 |
| 45 | 3651937 | 3652191 | - | NZ_AP022612.1 | Mycolicibacterium confluentis |
| 46 | 3224492 | 3224773 | + | NZ_CP047156.1 | Epidermidibacterium keratini |
| 47 | 568003 | 568251 | + | NZ_CP026948.1 | Corynebacterium liangguodongii |
| 48 | 5827539 | 5827820 | - | NZ_AP022572.1 | Mycobacterium shottsii |
| 49 | 1590779 | 1591060 | + | NZ_AP018410.1 | Mycobacterium pseudoshottsii JCM 15466 |
| 50 | 2982039 | 2982320 | + | NZ_CP058277.1 | Mycobacterium marinum |
| 51 | 999828 | 1000070 | + | NZ_CP038213.1 | Ornithinimicrobium flavum |
| 52 | 533899 | 534156 | + | NC_021064.1 | Cutibacterium avidum 44067 |
| 53 | 7642984 | 7643274 | - | NC_021252.1 | Amycolatopsis keratiniphila |
| 54 | 974392 | 974682 | + | NZ_CP008953.1 | Amycolatopsis japonica |
| 55 | 1337693 | 1337983 | + | NZ_CP016174.1 | Amycolatopsis orientalis |
| 56 | 3532041 | 3532295 | - | NC_013441.1 | Gordonia bronchialis DSM 43247 |
| 57 | 8832406 | 8832663 | - | NC_013131.1 | Catenulispora acidiphila DSM 44928 |
| 58 | 303875 | 304123 | - | NZ_CP038157.1 | Corynebacterium sanguinis |
| 59 | 8832688 | 8832975 | - | NC_022116.1 | Amycolatopsis mediterranei RB |
| 60 | 810975 | 811262 | + | NC_004369.1 | Corynebacterium efficiens YS-314 |
| 61 | 1460326 | 1460586 | - | NZ_CP032788.1 | Corynebacterium xerosis |
| 62 | 896337 | 896657 | - | NZ_CP066049.1 | Actinomyces naeslundii |
| 63 | 1736066 | 1736386 | - | NZ_LR134477.1 | Actinomyces viscosus |
| 64 | 4871796 | 4872050 | + | NZ_CP041146.1 | Nocardioides humi |
| 65 | 5736776 | 5737060 | - | NZ_CP016353.1 | Prauserella marina |
| 66 | 389788 | 390108 | + | NZ_CP066060.1 | Actinomyces oris |
| 67 | 1439617 | 1439874 | - | NZ_CP035806.1 | Leucobacter triazinivorans |
| 68 | 1847395 | 1847652 | - | NC_006085.1 | Cutibacterium acnes KPA171202 |
| 69 | 3801894 | 3802148 | - | NZ_CP022295.1 | Nocardioides aromaticivorans |
| 70 | 1721433 | 1721732 | - | NZ_CP031356.1 | Brachybacterium saurashtrense |
| 71 | 1025200 | 1025457 | + | NZ_LR134406.1 | Arachnia propionica |
| 72 | 1042339 | 1042587 | - | NZ_CP019400.1 | Acidipropionibacterium acidipropionici |
| 73 | 2326450 | 2326749 | - | NC_013172.1 | Brachybacterium faecium DSM 4810 |
| 74 | 376385 | 376639 | + | NZ_CP041091.1 | Nocardioides sambongensis |
| 75 | 366590 | 366907 | - | NZ_CP014228.1 | Actinomyces radicidentis |
| 76 | 2829692 | 2830009 | + | NZ_LR134350.1 | Actinomyces howellii |
| 77 | 2497575 | 2497907 | - | NC_013757.1 | Geodermatophilus obscurus DSM 43160 |
| 78 | 656889 | 657209 | + | NZ_CP025227.1 | Actinomyces wuliandei |
| 79 | 3043049 | 3043369 | - | NZ_LR134363.1 | Actinomyces slackii |
| 80 | 2526871 | 2527200 | - | NZ_CP051884.1 | Cellulomonas taurus |
| 81 | 2763664 | 2763993 | - | NC_015514.1 | Cellulomonas fimi ATCC 484 |
| 82 | 1083355 | 1083603 | + | NZ_CP038266.1 | Microbacterium wangchenii |
| 83 | 1231716 | 1232003 | + | NC_015671.1 | Cellulomonas gilvus ATCC 13127 |
| 84 | 275569 | 275865 | + | NZ_CP066065.1 | Schaalia meyeri |
| 85 | 2607381 | 2607713 | - | NC_015588.1 | Isoptericola variabilis 225 |
| 86 | 979664 | 980002 | + | NZ_CP006842.1 | Corynebacterium glyciniphilum AJ 3170 |
| 87 | 252404 | 252652 | + | NZ_LR134357.1 | Actinomyces israelii |
| 88 | 142632 | 142940 | + | NC_004572.3 | Tropheryma whipplei str. Twist |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP022752.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF06262.13 | 0.61 | 54 | 4667.5 | opposite-strand | Zincin-like metallopeptidase |
| 2 | PF12005.10 | 0.68 | 60 | 4167.0 | same-strand | Protein of unknown function (DUF3499) |
| 3 | PF02878.18 | 0.6 | 53 | 1294 | same-strand | Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I |
| 4 | PF02879.18 | 0.6 | 53 | 1294 | same-strand | Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II |
| 5 | PF02880.18 | 0.6 | 53 | 1294 | same-strand | Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III |
| 6 | PF13641.8 | 0.61 | 54 | 1547.5 | same-strand | Glycosyltransferase like family 2 |
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