Result : Q8G5J9
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Transcriptional regulator WhiB1 |
| NCBI Accession ID | AE014295.3 |
| Organism | Bifidobacterium longum (strain NCC 2705) |
| Left | 833664 |
| Right | 833942 |
| Strand | + |
| Nucleotide Sequence | ATGAGCAGCGCTTTTGATTGGCGAGCCAAGGCCGCATGTCGTGACAAGGATCCGGAACTCTTCTTCCCGGTGGGCAACACCGGTGCAGCCTATCAGCAGATTGAGGAGGCCAAGGCCGTGTGCCGCACCTGCAAAGTGATTGACGCATGCCTGAAGTGCGCACTGGACACCAATCAGGATTACGGCGTGTGGGGCGGCTTGAGCGAAGATGAGCGTCGTGCGCTGAAGCGCCGCGCCATGCGCGCCCGCCGTTCTCAGGCCATGCAGATGCAAATCTGA |
| Sequence | MSSAFDWRAKAACRDKDPELFFPVGNTGAAYQQIEEAKAVCRTCKVIDACLKCALDTNQDYGVWGGLSEDERRALKRRAMRARRSQAMQMQI |
| Source of smORF | Swiss-Prot |
| Function | Acts as a transcriptional regulator. Probably redox-responsive. The apo- but not holo-form probably binds DNA (By similarity). {ECO:0000250}. |
| Pubmed ID | 12381787 22609519 |
| Domain | CDD:396843 |
| Functional Category | DNA-binding_and_Metal-binding |
| Uniprot ID | Q8G5J9 |
| ORF Length (Amino Acid) | 92 |
++ More..
| Conservation Analysis |
No. of Species: 256
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 812019 | 812297 | - | NZ_CP026999.1 | Bifidobacterium longum |
| 2 | 605858 | 606136 | + | NZ_CP062938.1 | Bifidobacterium eulemuris |
| 3 | 2168533 | 2168811 | - | NZ_CP062948.1 | Bifidobacterium lemurum |
| 4 | 1004481 | 1004759 | - | NZ_AP012326.1 | Bifidobacterium dentium JCM 1195 = DSM 20436 |
| 5 | 892353 | 892631 | - | NZ_CP025199.1 | Bifidobacterium pseudocatenulatum |
| 6 | 872317 | 872595 | - | NZ_CP028341.1 | Bifidobacterium adolescentis |
| 7 | 829865 | 830143 | - | NZ_AP012325.1 | Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043 |
| 8 | 1152162 | 1152440 | + | NZ_CP022544.1 | Bifidobacterium pseudolongum |
| 9 | 1316911 | 1317189 | + | NZ_AP012322.1 | Bifidobacterium angulatum DSM 20098 = JCM 7096 |
| 10 | 864663 | 864941 | - | NZ_CP006712.1 | Bifidobacterium breve JCM 7017 |
| 11 | 1251726 | 1252004 | + | NC_018720.1 | Bifidobacterium asteroides PRL2011 |
| 12 | 1012900 | 1013178 | + | NZ_CP006018.1 | Bifidobacterium indicum LMG 11587 = DSM 20214 |
| 13 | 1032670 | 1032948 | + | NZ_CP007287.1 | Bifidobacterium coryneforme |
| 14 | 373763 | 374038 | - | NZ_CP011786.1 | Bifidobacterium actinocoloniiforme DSM 22766 |
| 15 | 1706604 | 1706879 | + | NZ_AP012331.1 | Bifidobacterium scardovii JCM 12489 = DSM 13734 |
| 16 | 1162767 | 1163039 | + | NZ_AP012333.1 | Parascardovia denticolens DSM 10105 = JCM 12538 |
| 17 | 658409 | 658678 | - | NZ_AP012334.1 | Scardovia inopinata JCM 12537 |
| 18 | 2687513 | 2687761 | + | NC_014151.1 | Cellulomonas flavigena DSM 20109 |
| 19 | 1238038 | 1238286 | - | NZ_CP039291.1 | Cellulomonas shaoxiangyii |
| 20 | 1154655 | 1154903 | - | NC_015671.1 | Cellulomonas gilvus ATCC 13127 |
| 21 | 9535961 | 9536215 | + | NZ_CP045572.1 | Nonomuraea nitratireducens |
| 22 | 2819495 | 2819743 | + | NC_015514.1 | Cellulomonas fimi ATCC 484 |
| 23 | 2584272 | 2584520 | + | NZ_CP051884.1 | Cellulomonas taurus |
| 24 | 1964167 | 1964430 | + | NZ_CP043661.1 | Kribbella qitaiheensis |
| 25 | 1381256 | 1381507 | - | NZ_CP011502.1 | Aeromicrobium erythreum |
| 26 | 1968900 | 1969154 | - | NZ_CP022295.1 | Nocardioides aromaticivorans |
| 27 | 9167810 | 9168064 | + | NC_013595.1 | Streptosporangium roseum DSM 43021 |
| 28 | 2942225 | 2942476 | + | NZ_CP049257.1 | Nocardioides anomalus |
| 29 | 2619319 | 2619570 | + | NZ_CP026952.1 | Aeromicrobium chenweiae |
| 30 | 722623 | 722877 | + | NZ_AP019307.1 | Nocardioides baekrokdamisoli |
| 31 | 4397529 | 4397780 | + | NC_013757.1 | Geodermatophilus obscurus DSM 43160 |
| 32 | 3232961 | 3233212 | - | NZ_CP060713.1 | Nocardioides mesophilus |
| 33 | 874596 | 874850 | - | NZ_CP060713.1 | Nocardioides mesophilus |
| 34 | 1722710 | 1722961 | - | NZ_CP059164.1 | Nocardioides ungokensis |
| 35 | 2586245 | 2586496 | + | NZ_CP045737.1 | Aeromicrobium yanjiei |
| 36 | 486627 | 486881 | + | NZ_CP041146.1 | Nocardioides humi |
| 37 | 2045098 | 2045352 | + | NZ_CP041091.1 | Nocardioides sambongensis |
| 38 | 2112347 | 2112601 | - | NZ_CP009896.1 | Pimelobacter simplex |
| 39 | 2892861 | 2893112 | - | NZ_CP038436.1 | Nocardioides seonyuensis |
| 40 | 2720358 | 2720615 | + | NZ_CP038436.1 | Nocardioides seonyuensis |
| 41 | 3368334 | 3368582 | - | NZ_CP047156.1 | Epidermidibacterium keratini |
| 42 | 8874056 | 8874310 | + | NZ_CP007155.1 | Kutzneria albida DSM 43870 |
| 43 | 5607686 | 5607949 | + | NC_013729.1 | Kribbella flavida DSM 17836 |
| 44 | 1005162 | 1005407 | - | NC_014666.1 | Frankia inefficax |
| 45 | 1142101 | 1142352 | + | NZ_CP038267.1 | Nocardioides euryhalodurans |
| 46 | 5980292 | 5980543 | + | NZ_AP018920.1 | Pseudonocardia autotrophica |
| 47 | 2312291 | 2312542 | - | NZ_LT996886.1 | Tessaracoccus timonensis |
| 48 | 4180609 | 4180860 | + | NZ_CP015079.1 | Nocardioides dokdonensis FR1436 |
| 49 | 161943 | 162197 | - | NZ_CP015079.1 | Nocardioides dokdonensis FR1436 |
| 50 | 4674961 | 4675215 | - | NZ_AP022871.1 | Phytohabitans suffuscus |
| 51 | 630966 | 631220 | + | NZ_AP022589.1 | Mycolicibacter minnesotensis |
| 52 | 3337885 | 3338139 | - | NZ_AP022562.1 | Mycobacterium novum |
| 53 | 3139399 | 3139653 | + | NC_015576.1 | Mycolicibacter sinensis |
| 54 | 7244992 | 7245246 | + | NZ_CP023445.1 | Actinosynnema pretiosum |
| 55 | 7377909 | 7378163 | + | NC_013093.1 | Actinosynnema mirum DSM 43827 |
| 56 | 6609275 | 6609589 | + | NC_013093.1 | Actinosynnema mirum DSM 43827 |
| 57 | 8374244 | 8374498 | + | NC_019673.1 | Saccharothrix espanaensis DSM 44229 |
| 58 | 3869805 | 3870059 | - | NZ_CP016793.1 | Lentzea guizhouensis |
| 59 | 10020955 | 10021209 | + | NZ_CP034550.1 | Saccharothrix syringae |
| 60 | 976601 | 976858 | - | NZ_CP022752.1 | Actinopolyspora erythraea |
| 61 | 3048118 | 3048372 | + | NZ_LT906469.1 | Mycolicibacter terrae |
| 62 | 10734691 | 10734945 | + | NZ_CP012752.1 | Kibdelosporangium phytohabitans |
| 63 | 5747978 | 5748232 | + | NZ_CP022521.1 | Actinoalloteichus hoggarensis |
| 64 | 6240684 | 6240938 | + | NZ_CP016076.1 | Actinoalloteichus fjordicus |
| 65 | 592846 | 593097 | - | NC_008578.1 | Acidothermus cellulolyticus 11B |
| 66 | 7201315 | 7201569 | + | NC_009142.1 | Saccharopolyspora erythraea NRRL 2338 |
| 67 | 3114299 | 3114556 | - | NC_009142.1 | Saccharopolyspora erythraea NRRL 2338 |
| 68 | 1762800 | 1763051 | + | NZ_CP044344.1 | Nocardioides cynanchi |
| 69 | 3299103 | 3299342 | + | NZ_CP044344.1 | Nocardioides cynanchi |
| 70 | 4552224 | 4552481 | + | NZ_CP045309.1 | Micromonospora terminaliae |
| 71 | 4461041 | 4461298 | - | NZ_CP061725.1 | Micromonospora craniellae |
| 72 | 282175 | 282438 | + | NZ_CP038157.1 | Corynebacterium sanguinis |
| 73 | 8303091 | 8303345 | + | NC_022657.1 | Actinoplanes friuliensis DSM 7358 |
| 74 | 2489005 | 2489259 | + | NZ_AP022609.1 | Mycolicibacter hiberniae |
| 75 | 939856 | 940110 | - | NZ_AP022605.1 | Mycobacterium doricum |
| 76 | 888324 | 888578 | + | NZ_AP022615.1 | Mycobacterium heidelbergense |
| 77 | 6314277 | 6314534 | + | NZ_CP058322.1 | Micromonospora carbonacea |
| 78 | 561230 | 561493 | - | NZ_CP007790.1 | Corynebacterium marinum DSM 44953 |
| 79 | 6506135 | 6506383 | + | NC_008278.1 | Frankia alni ACN14a |
| 80 | 3356226 | 3356480 | + | NZ_CP029146.1 | Rhodococcus ruber |
| 81 | 1001922 | 1002176 | - | NZ_AP022613.1 | Mycobacterium conspicuum |
| 82 | 2870321 | 2870575 | - | NZ_AP022588.1 | Mycolicibacterium sediminis |
| 83 | 1703931 | 1704197 | + | NZ_CP046883.1 | Corynebacterium anserum |
| 84 | 932552 | 932806 | - | NZ_CP029543.1 | Mycobacterium leprae |
| 85 | 1739832 | 1740089 | - | NZ_CP022753.1 | Nocardiopsis gilva YIM 90087 |
| 86 | 1946961 | 1947215 | - | NZ_CP011269.1 | Mycolicibacterium fortuitum |
| 87 | 4507679 | 4507927 | + | NC_007777.1 | Frankia casuarinae |
| 88 | 1969071 | 1969325 | + | NZ_AP022603.1 | Mycolicibacterium fallax |
| 89 | 1664307 | 1664555 | + | NZ_CP012117.1 | Dermabacter vaginalis |
| 90 | 4107478 | 4107732 | + | NZ_CP023147.1 | Mycobacterium marseillense |
| 91 | 1081989 | 1082243 | - | NZ_CP011883.2 | Mycobacterium haemophilum DSM 44634 |
| 92 | 500657 | 500905 | - | NZ_CP070228.1 | Arcanobacterium phocisimile |
| 93 | 5583307 | 5583561 | - | NZ_AP022620.1 | Mycolicibacterium anyangense |
| 94 | 598958 | 599212 | - | NZ_LR026975.1 | Mycolicibacterium hassiacum DSM 44199 |
| 95 | 8561918 | 8562172 | - | NZ_AP022870.1 | Phytohabitans flavus |
| 96 | 2311227 | 2311469 | - | NZ_CP007519.1 | Trueperella pyogenes |
| 97 | 747940 | 748200 | - | NC_021915.1 | Corynebacterium maris DSM 45190 |
| 98 | 3595713 | 3595967 | + | NC_000962.3 | Mycobacterium tuberculosis H37Rv |
| 99 | 3650444 | 3650698 | + | NC_015848.1 | Mycobacterium canettii CIPT 140010059 |
| 100 | 493491 | 493745 | - | NZ_AP022581.1 | Mycobacterium lacus |
| 101 | 252599 | 252853 | + | NZ_AP022606.1 | Mycobacterium branderi |
| 102 | 4727420 | 4727674 | - | NC_022663.1 | Mycobacterium kansasii ATCC 12478 |
| 103 | 537219 | 537482 | - | NZ_CP011546.1 | Corynebacterium uterequi |
| 104 | 3026090 | 3026344 | - | NZ_AP022583.1 | Mycobacterium noviomagense |
| 105 | 3700695 | 3700949 | + | NZ_AP024310.1 | Mycobacterium heckeshornense |
| 106 | 710501 | 710761 | - | NZ_CP006764.1 | Corynebacterium doosanense CAU 212 = DSM 45436 |
| 107 | 1686135 | 1686389 | - | NZ_AP022618.1 | Mycolicibacterium insubricum |
| 108 | 5759816 | 5760070 | + | NZ_AP022579.1 | Mycolicibacterium boenickei |
| 109 | 1308101 | 1308355 | - | NZ_AP018164.1 | Mycobacterium shigaense |
| 110 | 1601277 | 1601531 | - | NZ_AP022610.1 | Mycolicibacterium madagascariense |
| 111 | 3000530 | 3000784 | + | NZ_AP022614.1 | Mycobacterium parmense |
| 112 | 5527598 | 5527852 | - | NZ_AP022582.1 | Mycobacterium seoulense |
| 113 | 18959 | 19213 | - | NZ_AP022582.1 | Mycobacterium seoulense |
| 114 | 5334433 | 5334687 | - | NZ_AP022619.1 | Mycobacterium paraseoulense |
| 115 | 745010 | 745264 | + | NZ_AP022599.1 | Mycolicibacterium pulveris |
| 116 | 2794471 | 2794728 | + | NZ_LR134501.1 | Nocardiopsis dassonvillei |
| 117 | 7906607 | 7906861 | + | NC_017093.1 | Actinoplanes missouriensis 431 |
| 118 | 2675146 | 2675400 | + | NZ_AP022575.1 | Mycobacterium shinjukuense |
| 119 | 5761557 | 5761811 | + | NZ_AP022572.1 | Mycobacterium shottsii |
| 120 | 1658067 | 1658321 | - | NZ_AP018410.1 | Mycobacterium pseudoshottsii JCM 15466 |
| 121 | 3048409 | 3048663 | - | NZ_CP058277.1 | Mycobacterium marinum |
| 122 | 5892312 | 5892569 | + | NC_014391.1 | Micromonospora aurantiaca ATCC 27029 |
| 123 | 1396113 | 1396367 | - | NZ_AP022561.1 | Mycolicibacterium aichiense |
| 124 | 5485300 | 5485566 | - | NC_013947.1 | Stackebrandtia nassauensis DSM 44728 |
| 125 | 4091148 | 4091402 | + | NZ_CP009360.4 | Mycobacterium avium subsp. hominissuis |
| 126 | 4246486 | 4246740 | + | NC_016946.1 | Mycobacterium intracellulare ATCC 13950 |
| 127 | 4364834 | 4365088 | + | NC_016948.1 | Mycobacterium paraintracellulare |
| 128 | 1397002 | 1397256 | - | NZ_LR130759.1 | Mycobacterium basiliense |
| 129 | 1330198 | 1330452 | + | NZ_AP022568.1 | Mycobacterium simiae |
| 130 | 589964 | 590227 | - | NZ_CP026948.1 | Corynebacterium liangguodongii |
| 131 | 2510508 | 2510762 | + | NZ_AP022608.1 | Mycolicibacterium gadium |
| 132 | 5186043 | 5186297 | - | NZ_AP022573.1 | Mycobacterium saskatchewanense |
| 133 | 2553749 | 2554003 | + | NZ_AP022587.1 | Mycobacterium stomatepiae |
| 134 | 2251382 | 2251636 | + | NZ_AP022576.1 | Mycobacterium florentinum |
| 135 | 5867013 | 5867267 | - | NZ_AP022590.1 | Mycobacterium mantenii |
| 136 | 3920027 | 3920281 | - | NZ_AP022596.1 | Mycolicibacterium helvum |
| 137 | 1814310 | 1814570 | + | NZ_LT906473.1 | Corynebacterium cystitidis |
| 138 | 939233 | 939481 | - | NZ_CP028913.1 | Agromyces badenianii |
| 139 | 1315532 | 1315786 | - | NZ_LT906483.1 | Mycolicibacterium thermoresistibile |
| 140 | 7413365 | 7413619 | + | NZ_CP023865.1 | Actinoplanes teichomyceticus ATCC 31121 |
| 141 | 1530191 | 1530445 | - | NZ_LR134356.1 | Mycolicibacterium aurum |
| 142 | 5153648 | 5153902 | + | NZ_AP022560.1 | Mycolicibacterium moriokaense |
| 143 | 4243900 | 4244157 | + | NC_009380.1 | Salinispora tropica CNB-440 |
| 144 | 2812517 | 2812771 | - | NZ_CP043474.1 | Mycobacterium grossiae |
| 145 | 1613979 | 1614233 | - | NZ_CP025546.1 | Mycobacterium paragordonae |
| 146 | 1971986 | 1972240 | + | NZ_AP022565.1 | Mycolicibacterium alvei |
| 147 | 2908602 | 2908856 | + | NZ_AP022586.1 | Mycolicibacterium litorale |
| 148 | 3362399 | 3362653 | + | NZ_AP022617.1 | Mycolicibacterium monacense |
| 149 | 2066152 | 2066406 | - | NZ_LN831039.1 | Mycolicibacterium smegmatis |
| 150 | 6289900 | 6290154 | + | NZ_CP012150.1 | Mycobacterium goodii |
| 151 | 5271261 | 5271515 | + | NZ_CP020809.1 | Mycobacterium dioxanotrophicus |
| 152 | 4934262 | 4934516 | - | NZ_AP022567.1 | Mycolicibacterium mageritense |
| 153 | 1684481 | 1684735 | + | NZ_AP022577.1 | Mycolicibacterium aubagnense |
| 154 | 4149367 | 4149621 | + | NZ_CP062008.1 | Mycolicibacterium mucogenicum DSM 44124 |
| 155 | 614859 | 615110 | + | NZ_CP019400.1 | Acidipropionibacterium acidipropionici |
| 156 | 2005269 | 2005523 | + | NZ_AP022593.1 | Mycolicibacterium arabiense |
| 157 | 1636565 | 1636816 | - | NZ_CP025198.1 | Acidipropionibacterium virtanenii |
| 158 | 3361870 | 3362124 | + | NZ_CP027433.1 | Gordonia iterans |
| 159 | 4825068 | 4825322 | - | NZ_AP022569.1 | Mycobacterium cookii |
| 160 | 1567437 | 1567691 | - | NZ_CP011491.1 | Mycolicibacterium vaccae 95051 |
| 161 | 704610 | 704873 | - | NZ_LT906467.1 | Corynebacterium imitans |
| 162 | 8372725 | 8372985 | + | NZ_CP045643.1 | Streptomyces fagopyri |
| 163 | 3975655 | 3975984 | + | NZ_CP045643.1 | Streptomyces fagopyri |
| 164 | 3238595 | 3238849 | + | NZ_CP011853.1 | Gordonia phthalatica |
| 165 | 7563619 | 7563873 | - | NZ_CP031142.1 | Saccharopolyspora pogona |
| 166 | 659876 | 660142 | - | NZ_CP009245.1 | Corynebacterium aquilae DSM 44791 |
| 167 | 5876859 | 5877113 | - | NZ_AP022601.1 | Mycobacterium gallinarum |
| 168 | 4343331 | 4343654 | - | NZ_CP029254.1 | Streptomyces spongiicola |
| 169 | 3662213 | 3662467 | - | NZ_AP022600.1 | Mycolicibacterium tokaiense |
| 170 | 6633125 | 6633379 | + | NZ_AP017900.1 | Nocardia seriolae |
| 171 | 5059936 | 5060190 | + | NZ_AP022574.1 | Mycolicibacterium psychrotolerans |
| 172 | 5890026 | 5890280 | + | NZ_AP022598.1 | Mycolicibacterium parafortuitum |
| 173 | 1893466 | 1893720 | - | NC_008726.1 | Mycolicibacterium vanbaalenii PYR-1 |
| 174 | 3737397 | 3737654 | + | NC_015312.1 | Pseudonocardia dioxanivorans CB1190 |
| 175 | 5645815 | 5646069 | - | NZ_AP022616.1 | Mycolicibacterium phocaicum |
| 176 | 1497650 | 1497904 | - | NZ_AP023396.1 | Nocardia wallacei |
| 177 | 6620738 | 6621013 | + | NZ_CP029188.1 | Streptomyces tirandamycinicus |
| 178 | 4101295 | 4101618 | - | NZ_CP029188.1 | Streptomyces tirandamycinicus |
| 179 | 1009108 | 1009371 | - | NZ_CP006842.1 | Corynebacterium glyciniphilum AJ 3170 |
| 180 | 2149773 | 2150027 | - | NZ_AP022570.1 | Mycolicibacterium poriferae |
| 181 | 2895475 | 2895729 | + | NZ_AP022563.1 | Mycolicibacterium duvalii |
| 182 | 14867 | 15121 | + | NZ_CP015235.1 | Rhodococcus fascians D188 |
| 183 | 313552 | 313800 | - | NZ_CP040508.1 | Rhodoluna limnophila |
| 184 | 9077540 | 9077797 | - | NZ_CP017248.1 | Streptomyces fodineus |
| 185 | 4167557 | 4167811 | + | NZ_CP017248.1 | Streptomyces fodineus |
| 186 | 3535007 | 3535336 | + | NZ_CP032698.1 | Streptomyces hundungensis |
| 187 | 1107828 | 1108076 | + | NZ_CP007490.1 | Rhodoluna lacicola |
| 188 | 7660659 | 7660910 | - | NZ_LN831790.1 | Streptomyces leeuwenhoekii |
| 189 | 3503864 | 3504118 | + | NZ_LN831790.1 | Streptomyces leeuwenhoekii |
| 190 | 477441 | 477695 | + | NZ_CP015866.1 | Streptomyces parvulus |
| 191 | 2873309 | 2873638 | + | NZ_CP023202.1 | Streptomyces xinghaiensis S187 |
| 192 | 7491359 | 7491610 | - | NZ_CP023703.1 | Streptomyces galilaeus |
| 193 | 597703 | 597969 | - | NZ_CP023703.1 | Streptomyces galilaeus |
| 194 | 4830264 | 4830515 | - | NZ_CP023703.1 | Streptomyces galilaeus |
| 195 | 1543421 | 1543651 | + | NZ_CP032427.1 | Streptomyces griseorubiginosus |
| 196 | 3872172 | 3872423 | + | NZ_CP032427.1 | Streptomyces griseorubiginosus |
| 197 | 6127343 | 6127597 | - | NZ_CP022744.1 | Streptomyces lincolnensis |
| 198 | 9252932 | 9253165 | - | NZ_CP023689.1 | Streptomyces chartreusis |
| 199 | 4038640 | 4038894 | + | NZ_CP023689.1 | Streptomyces chartreusis |
| 200 | 9963949 | 9964182 | - | NZ_CP034539.1 | Streptomyces cyaneochromogenes |
| 201 | 6134634 | 6134888 | - | NZ_CP034539.1 | Streptomyces cyaneochromogenes |
| 202 | 597727 | 597987 | - | NZ_CP026947.1 | Corynebacterium yudongzhengii |
| 203 | 7259663 | 7259902 | + | NZ_CP023698.1 | Streptomyces viridifaciens |
| 204 | 725992 | 726225 | + | NC_004572.3 | Tropheryma whipplei str. Twist |
| 205 | 1561680 | 1561931 | - | NC_013235.1 | Nakamurella multipartita DSM 44233 |
| 206 | 2673658 | 2673909 | + | NZ_CP031264.1 | Streptacidiphilus bronchialis |
| 207 | 4434047 | 4434301 | - | NZ_CP021080.1 | Streptomyces pluripotens |
| 208 | 4803937 | 4804191 | - | NZ_CP063374.1 | Streptomyces chromofuscus |
| 209 | 4524262 | 4524516 | - | NZ_CP029043.1 | Streptomyces nigra |
| 210 | 4390619 | 4390873 | - | NZ_CP022310.1 | Streptomyces calvus |
| 211 | 3611815 | 3612069 | + | NZ_CP051006.1 | Streptomyces griseofuscus |
| 212 | 5257380 | 5257634 | - | NZ_CP071839.1 | Streptomyces cyanogenus |
| 213 | 3600257 | 3600511 | + | NZ_CP034687.1 | Streptomyces griseoviridis |
| 214 | 515096 | 515359 | + | NZ_CP015098.1 | Streptomyces qaidamensis |
| 215 | 5499879 | 5500133 | - | NZ_CP015098.1 | Streptomyces qaidamensis |
| 216 | 1186091 | 1186342 | + | NZ_CP047020.1 | Streptomyces broussonetiae |
| 217 | 5675813 | 5676067 | - | NZ_CP047020.1 | Streptomyces broussonetiae |
| 218 | 5667086 | 5667319 | + | NZ_CP063373.1 | Streptomyces ferrugineus |
| 219 | 9098390 | 9098644 | + | NZ_CP063373.1 | Streptomyces ferrugineus |
| 220 | 1400892 | 1401167 | + | NC_013929.1 | Streptomyces scabiei 87.22 |
| 221 | 948685 | 949011 | - | NZ_CP016279.1 | Streptomyces griseochromogenes |
| 222 | 879203 | 879532 | - | NZ_CP051486.1 | Streptomyces pratensis |
| 223 | 5683816 | 5684070 | + | NZ_CP016353.1 | Prauserella marina |
| 224 | 751506 | 751766 | - | NZ_CP009246.1 | Corynebacterium flavescens |
| 225 | 890889 | 891140 | + | NZ_CP012382.1 | Streptomyces ambofaciens ATCC 23877 |
| 226 | 7587321 | 7587575 | + | NC_021252.1 | Amycolatopsis keratiniphila |
| 227 | 8779091 | 8779345 | + | NC_022116.1 | Amycolatopsis mediterranei RB |
| 228 | 3331685 | 3331939 | + | NC_013159.1 | Saccharomonospora viridis DSM 43017 |
| 229 | 836248 | 836532 | - | NC_013159.1 | Saccharomonospora viridis DSM 43017 |
| 230 | 2005508 | 2005768 | + | NC_021663.1 | Corynebacterium terpenotabidum Y-11 |
| 231 | 399175 | 399405 | - | NC_016582.1 | Streptomyces bingchenggensis BCW-1 |
| 232 | 7566532 | 7566852 | - | NC_016582.1 | Streptomyces bingchenggensis BCW-1 |
| 233 | 7240299 | 7240553 | - | NZ_CP072827.1 | Streptomyces mobaraensis NBRC 13819 = DSM 40847 |
| 234 | 3249586 | 3249906 | + | NZ_CP072827.1 | Streptomyces mobaraensis NBRC 13819 = DSM 40847 |
| 235 | 6532411 | 6532725 | - | NZ_CP065050.1 | Streptomyces solisilvae |
| 236 | 4586915 | 4587226 | + | NZ_CP031455.1 | Streptomyces olivoreticuli subsp. olivoreticuli |
| 237 | 3729938 | 3730186 | - | NZ_CP032229.1 | Streptomyces seoulensis |
| 238 | 3961803 | 3962063 | - | NZ_CP017316.1 | Streptomyces rubrolavendulae |
| 239 | 4123739 | 4123999 | - | NZ_CP023696.1 | Streptomyces fradiae ATCC 10745 = DSM 40063 |
| 240 | 7203677 | 7203940 | - | NZ_AP023439.1 | Streptomyces tuirus |
| 241 | 4601345 | 4601599 | - | NZ_AP023439.1 | Streptomyces tuirus |
| 242 | 4721625 | 4721954 | - | NZ_CP023695.1 | Streptomyces alboniger |
| 243 | 5133777 | 5134031 | - | NC_021985.1 | Streptomyces collinus Tu 365 |
| 244 | 3516112 | 3516441 | + | NZ_CP026652.1 | Streptomyces dengpaensis |
| 245 | 562633 | 562896 | + | NZ_CP021978.1 | Streptomyces hawaiiensis |
| 246 | 5304176 | 5304430 | - | NZ_CP021978.1 | Streptomyces hawaiiensis |
| 247 | 6046179 | 6046508 | - | NC_003155.5 | Streptomyces avermitilis MA-4680 = NBRC 14893 |
| 248 | 2003193 | 2003450 | + | NZ_CP030073.1 | Streptomyces cadmiisoli |
| 249 | 1195164 | 1195439 | - | NZ_CP030073.1 | Streptomyces cadmiisoli |
| 250 | 3916032 | 3916286 | + | NZ_CP030073.1 | Streptomyces cadmiisoli |
| 251 | 8121920 | 8122177 | - | NZ_CP023694.1 | Streptomyces coeruleorubidus |
| 252 | 5688820 | 5689074 | - | NZ_CP023694.1 | Streptomyces coeruleorubidus |
| 253 | 3744078 | 3744404 | + | NZ_AP023440.1 | Streptomyces glomeroaurantiacus |
| 254 | 5642106 | 5642429 | - | NZ_CP022685.1 | Streptomyces formicae |
| 255 | 4125723 | 4126049 | + | NZ_CP023699.1 | Streptomyces kanamyceticus |
| 256 | 1033637 | 1033891 | - | NZ_CP008953.1 | Amycolatopsis japonica |
| 257 | 1977608 | 1977865 | + | NZ_LS483460.1 | Corynebacterium minutissimum |
| 258 | 752703 | 752960 | - | NC_012590.1 | Corynebacterium aurimucosum ATCC 700975 |
| 259 | 788082 | 788339 | - | NZ_CP010827.1 | Corynebacterium singulare |
| 260 | 4966968 | 4967222 | + | NZ_CP015163.1 | Amycolatopsis albispora |
| 261 | 450164 | 450415 | + | NZ_CP010849.1 | Streptomyces cyaneogriseus subsp. noncyanogenus |
| 262 | 4663735 | 4663989 | - | NZ_CP010849.1 | Streptomyces cyaneogriseus subsp. noncyanogenus |
| 263 | 1393773 | 1394027 | - | NZ_CP016174.1 | Amycolatopsis orientalis |
| 264 | 3908015 | 3908269 | + | NZ_CP022208.1 | Rhodococcus pyridinivorans |
| 265 | 3567145 | 3567399 | + | NZ_LT906450.1 | Rhodococcus rhodochrous |
| 266 | 2921327 | 2921647 | + | NZ_CP034279.1 | Streptomyces ficellus |
| 267 | 429656 | 429907 | - | NZ_CP023408.1 | Streptomyces fungicidicus |
| 268 | 1137470 | 1137724 | - | NC_014158.1 | Tsukamurella paurometabola DSM 20162 |
| 269 | 4253487 | 4253741 | - | NZ_LS483468.1 | Rhodococcus coprophilus |
| 270 | 580063 | 580326 | - | NZ_CP019688.1 | Corynebacterium glaucum |
| 271 | 4764195 | 4764449 | + | NC_006361.1 | Nocardia farcinica IFM 10152 |
| 272 | 6298517 | 6298771 | + | NZ_LR134352.1 | Nocardia asteroides |
| 273 | 4673200 | 4673454 | - | NZ_CP023407.1 | Streptomyces fungicidicus |
| 274 | 3272394 | 3272648 | + | NC_010572.1 | Streptomyces griseus subsp. griseus NBRC 13350 |
| 275 | 5768015 | 5768266 | - | NZ_CP023690.1 | Streptomyces spectabilis |
| 276 | 2217944 | 2218198 | - | NZ_CP027114.1 | Gordonia alkanivorans |
| 277 | 4887867 | 4888121 | + | NZ_CP059694.1 | Gordonia rubripertincta |
| 278 | 3741711 | 3741953 | - | NZ_CP054938.1 | Streptomyces harbinensis |
| 279 | 3570358 | 3570600 | - | NZ_CP009922.3 | Streptomyces xiamenensis |
| 280 | 3180298 | 3180552 | - | NZ_CP026746.1 | Nocardia cyriacigeorgica |
| 281 | 5422707 | 5422961 | + | NZ_CP018082.1 | Nocardia mangyaensis |
| 282 | 878153 | 878407 | - | NZ_CP041695.1 | Nocardia otitidiscaviarum |
| 283 | 8135530 | 8135784 | - | NZ_CP022088.2 | Nocardia brasiliensis |
| 284 | 3673998 | 3674321 | + | NZ_CP011340.1 | Streptomyces pristinaespiralis |
| 285 | 823568 | 823834 | - | NZ_LS483459.1 | Corynebacterium jeikeium |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP045572.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF12282.10 | 0.64 | 165 | 102.5 | opposite-strand | Signal transduction histidine kinase |
| 2 | PF07568.14 | 0.66 | 168 | 103 | opposite-strand | Histidine kinase |
| 3 | PF02518.28 | 0.68 | 174 | 102.5 | opposite-strand | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase |
| 4 | PF08281.14 | 0.81 | 208 | 2389 | opposite-strand | Sigma-70, region 4 |
| 5 | PF04545.18 | 0.8 | 206 | 2387.0 | opposite-strand | Sigma-70, region 4 |
| 6 | PF04542.16 | 0.78 | 200 | 2365 | opposite-strand | Sigma-70 region 2 |
++ More..