Result : Q8FU23
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | UPF0337 protein CE0198 |
| NCBI Accession ID | BA000035.2 |
| Organism | Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395) |
| Left | 209278 |
| Right | 209511 |
| Strand | + |
| Nucleotide Sequence | ATGGGTGACCTGTCCAACAAGGCTGAAGGTGTCGGCGGCAAGATCAAGGAGGGCATCGGTGAGGCAACCGGTAATGAATCCCTCGCCGATGAGGGTCGTGCCGATCAGACCAAGGCTGACATCAAGGAAGCCGTGAGCGATGCCGGCGACAAGATCAAGGACGGCGCCAACAAGGTGCTGGGTTCCTTCCAGGACAAGGACCCGGATGTGGAGCATCCCGAAGCCGTCAACTAA |
| Sequence | MGDLSNKAEGVGGKIKEGIGEATGNESLADEGRADQTKADIKEAVSDAGDKIKDGANKVLGSFQDKDPDVEHPEAVN |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl22912. Profile Description: CsbD-like. hypothetical protein; Provisional |
| Pubmed ID | 12840036 |
| Domain | CDD:419889 |
| Functional Category | Others |
| Uniprot ID | Q8FU23 |
| ORF Length (Amino Acid) | 77 |
++ More..
| Conservation Analysis |
No. of Species: 40
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 209278 | 209511 | + | NC_004369.1 | Corynebacterium efficiens YS-314 |
| 2 | 259852 | 260061 | + | NZ_CP009220.1 | Corynebacterium deserti GIMN1.010 |
| 3 | 220061 | 220267 | + | NC_020506.1 | Corynebacterium callunae DSM 20147 |
| 4 | 714363 | 714572 | - | NZ_LT906443.1 | Corynebacterium ulcerans |
| 5 | 1617094 | 1617303 | - | NC_017301.2 | Corynebacterium pseudotuberculosis C231 |
| 6 | 248482 | 248685 | + | NZ_CP015622.1 | Corynebacterium crudilactis |
| 7 | 1690215 | 1690424 | - | NZ_LR738855.1 | Corynebacterium rouxii |
| 8 | 1675844 | 1676053 | - | NZ_LN831026.1 | Corynebacterium diphtheriae |
| 9 | 373814 | 374008 | + | NZ_AP017369.1 | Corynebacterium suranareeae |
| 10 | 185411 | 185617 | + | NZ_CP011545.1 | Corynebacterium testudinoris |
| 11 | 2430815 | 2431030 | - | NZ_LT906473.1 | Corynebacterium cystitidis |
| 12 | 216091 | 216294 | + | NZ_CP011541.1 | Corynebacterium epidermidicanis |
| 13 | 758305 | 758511 | + | NZ_CP033898.1 | Corynebacterium pseudopelargi |
| 14 | 126533 | 126736 | + | NZ_CP011546.1 | Corynebacterium uterequi |
| 15 | 757007 | 757213 | + | NZ_CP035299.1 | Corynebacterium pelargi |
| 16 | 146623 | 146826 | + | NZ_CP026947.1 | Corynebacterium yudongzhengii |
| 17 | 1611507 | 1611713 | - | NZ_CP033897.1 | Corynebacterium gerontici |
| 18 | 127864 | 128073 | + | NZ_CP011312.1 | Corynebacterium kutscheri |
| 19 | 119464 | 119667 | + | NZ_CP008944.1 | Corynebacterium atypicum |
| 20 | 140924 | 141157 | + | NZ_CP009245.1 | Corynebacterium aquilae DSM 44791 |
| 21 | 1957185 | 1957403 | - | NZ_CP069485.1 | Corynebacterium glucuronolyticum |
| 22 | 211980 | 212186 | + | NZ_CP009246.1 | Corynebacterium flavescens |
| 23 | 186410 | 186619 | + | NZ_CP007790.1 | Corynebacterium marinum DSM 44953 |
| 24 | 1975442 | 1975645 | - | NZ_LS483459.1 | Corynebacterium jeikeium |
| 25 | 73276 | 73476 | - | NC_022198.1 | Corynebacterium argentoratense DSM 44202 |
| 26 | 1026772 | 1026981 | - | NZ_CP042429.1 | Corynebacterium nuruki S6-4 |
| 27 | 245331 | 245543 | + | NZ_CP009251.1 | Corynebacterium stationis |
| 28 | 211694 | 211897 | + | NZ_CP009247.1 | Corynebacterium frankenforstense DSM 45800 |
| 29 | 251380 | 251589 | + | NZ_CP006764.1 | Corynebacterium doosanense CAU 212 = DSM 45436 |
| 30 | 245479 | 245691 | + | NZ_LR698967.1 | Corynebacterium ammoniagenes |
| 31 | 962871 | 963080 | + | NC_021663.1 | Corynebacterium terpenotabidum Y-11 |
| 32 | 2468206 | 2468406 | - | NZ_CP067012.1 | Corynebacterium kefirresidentii |
| 33 | 1397738 | 1397938 | - | NZ_CP014635.1 | Corynebacterium simulans |
| 34 | 3710605 | 3710799 | - | NC_013595.1 | Streptosporangium roseum DSM 43021 |
| 35 | 227248 | 227460 | + | NZ_LT906467.1 | Corynebacterium imitans |
| 36 | 6270523 | 6270723 | - | NZ_CP016174.1 | Amycolatopsis orientalis |
| 37 | 4630016 | 4630207 | + | NZ_CP048813.1 | Rhodococcus triatomae |
| 38 | 2786515 | 2786715 | - | NZ_CP015163.1 | Amycolatopsis albispora |
| 39 | 6278905 | 6279105 | - | NC_021252.1 | Amycolatopsis keratiniphila |
| 40 | 2391814 | 2392014 | + | NZ_CP008953.1 | Amycolatopsis japonica |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_004369.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00383.25 | 0.6 | 24 | 101.5 | same-strand | Cytidine and deoxycytidylate deaminase zinc-binding region |
++ More..