Result : Q8DVB4
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Exodeoxyribonuclease 7 small subunit (EC 3.1.11.6) (Exodeoxyribonuclease VII small subunit) (Exonuclease VII small subunit) |
| NCBI Accession ID | AE014133.2 |
| Organism | Streptococcus mutans serotype c (strain ATCC 700610 / UA159) |
| Left | 542717 |
| Right | 542938 |
| Strand | + |
| Nucleotide Sequence | ATGTCAAACAAGAAGAAAACATTTGAAGAAAATTTACAGGATTTAGAAGAAATTGTGAACCAGTTAGAAACCGGTGAAATTCCTCTTGAAGAAGCTATTACTCAATTCCAAAAAGGAATGGCGCTTTCTAAAGATTTGCAGAAAACCTTGGAGTCTGCTGAAAAGACCTTGGTCAAAGTCATGCAGGCTGATGGCAGTGAAGCAGAAATGGACGAGTTGTGA |
| Sequence | MSNKKKTFEENLQDLEEIVNQLETGEIPLEEAITQFQKGMALSKDLQKTLESAEKTLVKVMQADGSEAEMDEL |
| Source of smORF | Swiss-Prot |
| Function | Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides. {ECO:0000255|HAMAP-Rule:MF_00337}. |
| Pubmed ID | 12397186 |
| Domain | CDD:412547 |
| Functional Category | Others |
| Uniprot ID | Q8DVB4 |
| ORF Length (Amino Acid) | 73 |
++ More..
| Conservation Analysis |
No. of Species: 134
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1074633 | 1074854 | - | NZ_CP013237.1 | Streptococcus mutans |
| 2 | 1556789 | 1557010 | - | NZ_AP014612.1 | Streptococcus troglodytae |
| 3 | 184896 | 185111 | - | NZ_CP043405.1 | Streptococcus ratti |
| 4 | 639808 | 640032 | + | NZ_CP029491.1 | Streptococcus sobrinus |
| 5 | 515686 | 515901 | + | NZ_LS483343.1 | Streptococcus ferus |
| 6 | 1118995 | 1119210 | - | NZ_LR134275.1 | Streptococcus vestibularis |
| 7 | 1132471 | 1132686 | - | NZ_CP010450.1 | Streptococcus pyogenes |
| 8 | 1482556 | 1482771 | - | NZ_LR594046.1 | Streptococcus dysgalactiae |
| 9 | 1482454 | 1482672 | - | NZ_CP025536.1 | Streptococcus pluranimalium |
| 10 | 1178986 | 1179201 | - | NC_017581.1 | Streptococcus thermophilus JIM 8232 |
| 11 | 1415908 | 1416123 | - | NZ_CP065061.1 | Streptococcus equi subsp. zooepidemicus |
| 12 | 1244785 | 1245000 | + | NZ_LR134293.1 | Streptococcus canis |
| 13 | 549474 | 549689 | + | NZ_CP039457.1 | Streptococcus pasteurianus |
| 14 | 1426448 | 1426663 | + | NZ_CP054015.1 | Streptococcus gallolyticus |
| 15 | 1034022 | 1034240 | - | NZ_CP014835.1 | Streptococcus halotolerans |
| 16 | 1568259 | 1568474 | - | NC_012924.1 | Streptococcus suis SC84 |
| 17 | 501958 | 502173 | + | NZ_LS483403.1 | Streptococcus lutetiensis |
| 18 | 714755 | 714988 | + | NZ_CP031733.1 | Streptococcus chenjunshii |
| 19 | 8852 | 9064 | - | NZ_CP032620.1 | Streptococcus koreensis |
| 20 | 463862 | 464077 | + | NZ_AP018400.1 | Streptococcus ruminantium |
| 21 | 1445122 | 1445352 | - | NZ_CP014699.1 | Streptococcus pantholopis |
| 22 | 509088 | 509303 | + | NZ_LR134512.1 | Streptococcus agalactiae |
| 23 | 1410966 | 1411178 | - | NZ_LS483383.1 | Streptococcus cristatus ATCC 51100 |
| 24 | 1350060 | 1350272 | - | NZ_LS483436.1 | Streptococcus intermedius |
| 25 | 2256545 | 2256727 | - | NZ_CP016953.1 | Streptococcus himalayensis |
| 26 | 187884 | 188066 | - | NZ_CP015196.1 | Streptococcus marmotae |
| 27 | 1352922 | 1353134 | - | NZ_CP034543.1 | Streptococcus periodonticum |
| 28 | 1412472 | 1412684 | - | NZ_CP012805.1 | Streptococcus anginosus |
| 29 | 1933406 | 1933618 | - | NZ_CP022680.1 | Streptococcus respiraculi |
| 30 | 537125 | 537343 | + | NZ_LR594050.1 | Streptococcus porcinus |
| 31 | 717936 | 718154 | - | NZ_LR134341.1 | Streptococcus pseudoporcinus |
| 32 | 715716 | 715928 | + | NZ_LR594049.1 | Streptococcus gordonii |
| 33 | 67327 | 67545 | + | NZ_LT906439.1 | Streptococcus merionis |
| 34 | 2273948 | 2274178 | + | NZ_CP037940.1 | Weissella cryptocerci |
| 35 | 956655 | 956867 | - | NZ_CP032621.1 | Streptococcus gwangjuense |
| 36 | 1113848 | 1114060 | - | NC_015875.1 | Streptococcus pseudopneumoniae IS7493 |
| 37 | 1086031 | 1086267 | + | NZ_CP017702.1 | Companilactobacillus farciminis KCTC 3681 = DSM 20184 |
| 38 | 1387736 | 1387972 | - | NZ_CP049366.1 | Companilactobacillus pabuli |
| 39 | 865197 | 865433 | + | NZ_CP053421.1 | Pediococcus acidilactici |
| 40 | 1084583 | 1084795 | - | NZ_LR134336.1 | Streptococcus oralis ATCC 35037 |
| 41 | 2015836 | 2016045 | - | NZ_CP042371.1 | Secundilactobacillus malefermentans |
| 42 | 825445 | 825681 | + | NC_008525.1 | Pediococcus pentosaceus ATCC 25745 |
| 43 | 988162 | 988398 | + | NZ_CP040736.1 | Companilactobacillus futsaii |
| 44 | 261197 | 261415 | - | NZ_CP023392.1 | Lactococcus raffinolactis |
| 45 | 1725820 | 1726059 | + | NZ_CP019323.1 | Companilactobacillus allii |
| 46 | 843961 | 844200 | + | NZ_CP017996.1 | Companilactobacillus crustorum |
| 47 | 1329241 | 1329447 | - | NZ_CP017194.1 | Lactococcus carnosus |
| 48 | 1401216 | 1401422 | - | NZ_CP017195.1 | Lactococcus paracarnosus |
| 49 | 1274351 | 1274581 | - | NZ_CP045007.1 | Latilactobacillus graminis |
| 50 | 207813 | 208043 | + | NZ_CP026116.1 | Latilactobacillus curvatus JCM 1096 = DSM 20019 |
| 51 | 726560 | 726802 | + | NZ_CP018809.1 | Lactobacillus jensenii |
| 52 | 599265 | 599495 | - | NZ_CP049887.1 | Vagococcus hydrophili |
| 53 | 1061676 | 1061906 | + | NZ_CP030105.1 | Lactiplantibacillus plantarum |
| 54 | 681097 | 681336 | - | NZ_CP012034.1 | Companilactobacillus ginsenosidimutans |
| 55 | 1678676 | 1678906 | + | NZ_CP032757.1 | Lactiplantibacillus pentosus |
| 56 | 400316 | 400567 | + | NZ_CP031513.1 | Bombilactobacillus bombi |
| 57 | 1166015 | 1166251 | - | NZ_CP024610.1 | Lactobacillus terrae |
| 58 | 2966387 | 2966635 | - | NZ_CP012033.1 | Levilactobacillus koreensis |
| 59 | 1066253 | 1066486 | - | NC_016605.1 | Pediococcus claussenii ATCC BAA-344 |
| 60 | 544466 | 544693 | + | NZ_CP017267.1 | Vagococcus teuberi |
| 61 | 1543086 | 1543322 | - | NZ_CP012559.1 | Companilactobacillus heilongjiangensis |
| 62 | 594858 | 595109 | + | NZ_CP045562.1 | Fructilactobacillus fructivorans |
| 63 | 147372 | 147611 | - | NZ_CP018888.1 | Amylolactobacillus amylophilus DSM 20533 = JCM 1125 |
| 64 | 1474887 | 1475117 | + | NZ_CP046037.1 | Latilactobacillus sakei |
| 65 | 1546976 | 1547194 | - | NZ_CP014332.1 | Weissella jogaejeotgali |
| 66 | 1236834 | 1237022 | - | NZ_CP017326.1 | Weissella soli |
| 67 | 604347 | 604538 | + | NZ_CP027563.1 | Weissella confusa |
| 68 | 845448 | 845690 | + | NZ_CP059829.1 | Lactobacillus ultunensis |
| 69 | 1737807 | 1738031 | - | NZ_CP065637.1 | Lactococcus garvieae |
| 70 | 1658051 | 1658290 | - | NZ_CP021874.1 | Enterococcus wangshanyuanii |
| 71 | 1155174 | 1155416 | - | NZ_CP029544.1 | Lactobacillus helsingborgensis |
| 72 | 791213 | 791449 | + | NZ_CP061341.1 | Lactobacillus kefiranofaciens |
| 73 | 2142868 | 2143059 | - | NZ_CP059603.1 | Levilactobacillus suantsaii |
| 74 | 280602 | 280820 | + | NZ_CP023501.1 | Weissella paramesenteroides |
| 75 | 1806598 | 1806807 | + | NZ_CP018906.1 | Lentilactobacillus curieae |
| 76 | 604591 | 604770 | + | NZ_CP060720.1 | Vagococcus carniphilus |
| 77 | 1730026 | 1730223 | - | NZ_CP017713.1 | Loigolactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM 20001 |
| 78 | 1005068 | 1005280 | + | NZ_AP014680.1 | Paucilactobacillus hokkaidonensis JCM 18461 |
| 79 | 1258228 | 1258419 | + | NZ_CP040586.1 | Furfurilactobacillus rossiae |
| 80 | 882855 | 883082 | + | NZ_CP047141.1 | Ligilactobacillus animalis |
| 81 | 910467 | 910661 | + | NZ_AP022822.1 | Enterococcus saigonensis |
| 82 | 1783639 | 1783824 | - | NZ_CP012047.1 | Tetragenococcus halophilus |
| 83 | 1238945 | 1239187 | - | NZ_CP029477.1 | Lactobacillus kullabergensis |
| 84 | 494963 | 495184 | + | NZ_CP061835.1 | Weissella viridescens |
| 85 | 2806111 | 2806305 | - | NZ_CP034465.1 | Jeotgalibaca ciconiae |
| 86 | 927905 | 928141 | + | NZ_CP070872.1 | Lactococcus taiwanensis |
| 87 | 931083 | 931274 | - | NZ_CP019728.1 | Jeotgalibaca dankookensis |
| 88 | 2291844 | 2292026 | - | NZ_CP049740.1 | Jeotgalibaca arthritidis |
| 89 | 1252881 | 1253120 | - | NZ_CP044499.1 | Lapidilactobacillus dextrinicus |
| 90 | 1441956 | 1442180 | + | NZ_CP042374.1 | Leuconostoc carnosum |
| 91 | 1593302 | 1593481 | - | NC_014334.2 | Lacticaseibacillus paracasei |
| 92 | 2042174 | 2042404 | - | NZ_CP016843.1 | Carnobacterium divergens |
| 93 | 572789 | 572986 | + | NZ_CP011403.1 | Ligilactobacillus salivarius str. Ren |
| 94 | 1574744 | 1574968 | - | NZ_LS991421.1 | Lacticaseibacillus zeae |
| 95 | 1398480 | 1398701 | + | NC_020995.1 | Enterococcus casseliflavus EC20 |
| 96 | 1669340 | 1669552 | - | NZ_CP065993.1 | Leuconostoc pseudomesenteroides |
| 97 | 860903 | 861082 | + | NZ_LN898144.1 | Paucilactobacillus oligofermentans DSM 15707 = LMG 22743 |
| 98 | 848445 | 848684 | + | NC_022369.1 | Lactococcus lactis subsp. cremoris KW2 |
| 99 | 1690905 | 1691129 | - | NZ_LS483306.1 | Enterococcus cecorum |
| 100 | 1486017 | 1486202 | + | NZ_CP027783.1 | Tetragenococcus osmophilus |
| 101 | 1570591 | 1570818 | - | NZ_AP012544.1 | Lacticaseibacillus casei DSM 20011 = JCM 1134 = ATCC 393 |
| 102 | 1374737 | 1374961 | - | NC_018631.1 | Leuconostoc gelidum JB7 |
| 103 | 2286971 | 2287162 | + | NZ_CP049889.1 | Jeotgalibaca porci |
| 104 | 1962306 | 1962530 | - | NC_020207.1 | Enterococcus faecium ATCC 8459 = NRRL B-2354 |
| 105 | 2020000 | 2020224 | - | NZ_CP065211.1 | Enterococcus lactis |
| 106 | 4230484 | 4230681 | - | NZ_CP024035.1 | Priestia aryabhattai |
| 107 | 1411093 | 1411323 | - | NZ_CP018180.1 | Liquorilactobacillus nagelii |
| 108 | 747009 | 747200 | + | NZ_CP023434.1 | Suicoccus acidiformans |
| 109 | 100037 | 100261 | + | NZ_CP028251.1 | Leuconostoc mesenteroides |
| 110 | 1564630 | 1564854 | - | NZ_CP015247.1 | Leuconostoc suionicum |
| 111 | 2628241 | 2628450 | - | NZ_CP014616.1 | Sporosarcina psychrophila |
| 112 | 691666 | 691866 | + | NZ_CP018061.1 | Enterococcus mundtii |
| 113 | 704648 | 704842 | + | NZ_CP032626.1 | Apilactobacillus bombintestini |
| 114 | 1140234 | 1140473 | - | NZ_CP032627.1 | Lactococcus allomyrinae |
| 115 | 2339316 | 2339543 | + | NZ_CP018796.1 | Lentilactobacillus parabuchneri |
| 116 | 1211002 | 1211226 | - | NZ_CP042410.1 | Leuconostoc citreum |
| 117 | 1253790 | 1254035 | - | NZ_CP014164.1 | Aerococcus viridans |
| 118 | 2575226 | 2575426 | - | NC_013791.2 | Alkalihalobacillus pseudofirmus OF4 |
| 119 | 952676 | 952921 | + | NZ_CP013988.1 | Aerococcus urinaeequi |
| 120 | 2909915 | 2910097 | - | NC_002570.2 | Alkalihalobacillus halodurans C-125 |
| 121 | 68739 | 68978 | - | NZ_CP014159.1 | Aerococcus christensenii |
| 122 | 1709699 | 1709887 | - | NZ_CP008876.1 | Terribacillus goriensis |
| 123 | 2478693 | 2478887 | - | NZ_CP015438.1 | Anoxybacillus amylolyticus |
| 124 | 1482487 | 1482708 | + | NZ_CP018776.1 | Staphylococcus condimenti |
| 125 | 2756149 | 2756331 | + | NZ_CP019699.1 | Novibacillus thermophilus |
| 126 | 693486 | 693680 | - | NZ_CP009709.1 | Weizmannia coagulans DSM 1 = ATCC 7050 |
| 127 | 1771969 | 1772169 | + | NZ_LS483476.1 | Lederbergia lentus |
| 128 | 2427168 | 2427362 | - | NC_006510.1 | Geobacillus kaustophilus HTA426 |
| 129 | 1627734 | 1627928 | - | NZ_CP061470.1 | Geobacillus zalihae |
| 130 | 1509770 | 1509964 | + | NZ_CP018058.1 | Geobacillus thermocatenulatus |
| 131 | 3510976 | 3511170 | + | NZ_CP061472.1 | Geobacillus thermoleovorans |
| 132 | 1164078 | 1164299 | + | NC_012483.1 | Acidobacterium capsulatum ATCC 51196 |
| 133 | 1871849 | 1872043 | - | NZ_CP012152.1 | Anoxybacillus gonensis |
| 134 | 856136 | 856321 | + | NZ_CP014342.1 | Geobacillus subterraneus |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP025536.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF02463.21 | 0.9 | 120 | 2171.0 | same-strand | RecF/RecN/SMC N terminal domain |
| 2 | PF13476.8 | 0.83 | 111 | 2168 | same-strand | AAA domain |
| 3 | PF01316.23 | 0.77 | 103 | 1726 | same-strand | Arginine repressor, DNA binding domain |
| 4 | PF02863.20 | 0.7 | 94 | 1733.0 | same-strand | Arginine repressor, C-terminal domain |
| 5 | PF01728.21 | 0.96 | 129 | 879 | same-strand | FtsJ-like methyltransferase |
| 6 | PF00348.19 | 0.87 | 116 | 0.0 | same-strand | Polyprenyl synthetase |
| 7 | PF02601.17 | 0.99 | 133 | 0 | same-strand | Exonuclease VII, large subunit |
| 8 | PF13742.8 | 0.99 | 132 | 0.0 | same-strand | OB-fold nucleic acid binding domain |
| 9 | PF01336.27 | 0.96 | 128 | 0.0 | same-strand | OB-fold nucleic acid binding domain |
| 10 | PF02882.21 | 0.78 | 104 | 1368.0 | same-strand | Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain |
| 11 | PF00763.25 | 0.78 | 104 | 1368.0 | same-strand | Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain |
++ More..