Result : Q8D5H3
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | UPF0251 protein VV2_0946 |
| NCBI Accession ID | AE016796.2 |
| Organism | Vibrio vulnificus (strain CMCP6) |
| Left | 1022058 |
| Right | 1022360 |
| Strand | - |
| Nucleotide Sequence | ATGCCAAGACCGAAAAAGCCCCGCACCATTGGTTGTTTGCCAAAAGCCAGCTGCTTTAAGCCCAATGGGATACCTGCACACAATTTGCCGCGCATTGCTCTAGAAGCCGATGAACTTGAAGCCCTGCGACTGGCGGACGTATTGCAACTGCATCAACTTGAAGCGGCTCAGAGTATGGGGGTGTCGAGGCAGACGTTTGGCAACATCATCAAGCGAGCGCGAAACAAAGTGGCGTTGTGTTTGGTGGAAGGCAAAGTGCTGACCTTGCCCAATCAAAGTCAAGATAAGGAGAAGGAAGCATGA |
| Sequence | MPRPKKPRTIGCLPKASCFKPNGIPAHNLPRIALEADELEALRLADVLQLHQLEAAQSMGVSRQTFGNIIKRARNKVALCLVEGKVLTLPNQSQDKEKEA |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl22854. Profile Description: N/A. YdaS_antitoxin is a family of putative bacterial antitoxins, neutralising the toxin YdaT, family pfam06254.**The ORF matches to the profile of cl22867. Profile Description: N/A. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif. |
| Pubmed ID | |
| Domain | CDD:419869,CDD:419874 |
| Functional Category | Others |
| Uniprot ID | Q8D5H3 |
| ORF Length (Amino Acid) | 100 |
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| Conservation Analysis |
No. of Species: 55
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 284728 | 285030 | + | NZ_CP044068.1 | Vibrio vulnificus |
| 2 | 560444 | 560728 | + | NC_009092.1 | Shewanella loihica PV-4 |
| 3 | 1474415 | 1474726 | + | NZ_LT960612.1 | Vibrio tapetis subsp. tapetis |
| 4 | 527406 | 527690 | + | NZ_CP022272.1 | Shewanella marisflavi |
| 5 | 488323 | 488616 | + | NZ_CP071325.1 | Photobacterium ganghwense |
| 6 | 810125 | 810418 | + | NZ_CP070624.1 | Photobacterium damselae subsp. damselae |
| 7 | 836434 | 836748 | + | NZ_CP005974.1 | Photobacterium gaetbulicola Gung47 |
| 8 | 626898 | 627200 | + | NC_011566.1 | Shewanella piezotolerans WP3 |
| 9 | 361911 | 362219 | - | NZ_CP051883.1 | Aeromonas salmonicida |
| 10 | 1517522 | 1517821 | - | NZ_CP014034.2 | Vibrio fluvialis |
| 11 | 830958 | 831254 | + | NC_016901.1 | Shewanella baltica OS678 |
| 12 | 1713990 | 1714271 | + | NC_016901.1 | Shewanella baltica OS678 |
| 13 | 1083380 | 1083691 | + | NZ_CP016415.1 | Vibrio scophthalmi |
| 14 | 4781546 | 4781836 | + | NC_009831.1 | Shewanella sediminis HAW-EB3 |
| 15 | 526163 | 526447 | + | NZ_CP046794.1 | Vibrio metschnikovii |
| 16 | 4003683 | 4003967 | + | NC_012880.1 | Musicola paradisiaca Ech703 |
| 17 | 1056059 | 1056394 | + | NZ_CP040991.1 | Vibrio furnissii |
| 18 | 14152 | 14442 | + | NZ_CP031782.1 | Vibrio parahaemolyticus |
| 19 | 1637907 | 1638182 | + | NZ_CP046268.1 | Vibrio spartinae |
| 20 | 4060704 | 4060994 | - | NZ_CP046378.1 | Shewanella algae |
| 21 | 135418 | 135699 | - | NZ_CP040022.1 | Salinivibrio kushneri |
| 22 | 794022 | 794312 | - | NC_013457.1 | Vibrio antiquarius |
| 23 | 4428195 | 4428485 | - | NC_009901.1 | Shewanella pealeana ATCC 700345 |
| 24 | 4521232 | 4521522 | - | NC_010334.1 | Shewanella halifaxensis HAW-EB4 |
| 25 | 783801 | 784115 | + | NZ_CP051180.1 | Ferrimonas lipolytica |
| 26 | 842678 | 842953 | - | NC_011312.1 | Aliivibrio salmonicida LFI1238 |
| 27 | 538429 | 538719 | + | NZ_CP009978.1 | Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 |
| 28 | 1381976 | 1382266 | - | NZ_CP032094.1 | Vibrio alfacsensis |
| 29 | 686964 | 687272 | - | NZ_CP034752.1 | Jinshanibacter zhutongyuii |
| 30 | 9682 | 9963 | + | NZ_CP014055.2 | Grimontia hollisae |
| 31 | 1229924 | 1230214 | + | NZ_CP018311.1 | Vibrio rotiferianus |
| 32 | 665197 | 665487 | - | NZ_CP009468.1 | Vibrio harveyi |
| 33 | 1750130 | 1750420 | - | NZ_CP019960.1 | Vibrio owensii |
| 34 | 1478357 | 1478650 | + | NZ_CP040449.1 | Aeromonas simiae |
| 35 | 667981 | 668262 | - | NZ_CP041036.1 | Shewanella polaris |
| 36 | 2335207 | 2335500 | - | NZ_CP041036.1 | Shewanella polaris |
| 37 | 67563 | 67883 | - | NZ_CP036176.1 | Klebsiella huaxiensis |
| 38 | 83395 | 83715 | - | NZ_CP041248.1 | Raoultella electrica |
| 39 | 350834 | 351115 | + | NC_012691.1 | Tolumonas auensis DSM 9187 |
| 40 | 1315268 | 1315549 | + | NC_012691.1 | Tolumonas auensis DSM 9187 |
| 41 | 1831631 | 1831912 | - | NC_012691.1 | Tolumonas auensis DSM 9187 |
| 42 | 3673789 | 3674067 | - | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 43 | 3515119 | 3515409 | - | NC_014541.1 | Ferrimonas balearica DSM 9799 |
| 44 | 920712 | 920981 | + | NZ_AP014636.1 | Vibrio tritonius |
| 45 | 4558029 | 4558343 | - | NZ_CP044060.1 | Aeromonas veronii |
| 46 | 1027880 | 1028167 | - | NZ_CP034015.1 | Shewanella livingstonensis |
| 47 | 681432 | 681713 | - | NC_008345.1 | Shewanella frigidimarina NCIMB 400 |
| 48 | 3448811 | 3449089 | - | NZ_CP023706.1 | Edwardsiella tarda |
| 49 | 1764431 | 1764709 | - | NZ_CP016043.1 | Edwardsiella hoshinae |
| 50 | 605304 | 605594 | + | NZ_CP025793.1 | Vibrio jasicida 090810c |
| 51 | 254286 | 254600 | - | NZ_CP065745.1 | Aeromonas allosaccharophila |
| 52 | 1110997 | 1111293 | + | NZ_CP035689.1 | Vibrio metoecus |
| 53 | 1741944 | 1742216 | - | NZ_CP009355.1 | Vibrio tubiashii ATCC 19109 |
| 54 | 93641 | 93937 | + | NZ_AP014525.1 | Vibrio cholerae MS6 |
| 55 | 1913277 | 1913555 | + | NZ_CP039700.1 | Vibrio cyclitrophicus |
| 56 | 1458554 | 1458829 | + | NZ_AP019658.1 | Vibrio ponticus |
| 57 | 2840072 | 2840350 | - | NZ_CP065150.1 | Vibrio kanaloae |
| 58 | 1864600 | 1864878 | + | NC_011753.2 | Vibrio atlanticus |
| 59 | 1322676 | 1322951 | + | NZ_AP019652.1 | Vibrio taketomensis |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP044068.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF02579.19 | 0.84 | 46 | 3.5 | same-strand | Dinitrogenase iron-molybdenum cofactor |
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