Result : Q8D204
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 50S ribosomal protein L29 |
| NCBI Accession ID | BA000021.3 |
| Organism | Wigglesworthia glossinidia brevipalpis |
| Left | 630365 |
| Right | 630571 |
| Strand | + |
| Nucleotide Sequence | ATGAATTTAAAAAATTTAAGAAAAAAAAACAAAAAAGAACTTAACAATGAATTACTAAATTTACTACGTGAACAATTTAATTTGCGCATGCAAGCTGGAAATGGACAATTGCAACACACTCATCTTTTAAAAGAAGTACGTAAAAATCTTGCTTATGTAAAAATGTTAATTAATGAAGAAAAAAAAGGTAGAAATAATAATGGGTAA |
| Sequence | MNLKNLRKKNKKELNNELLNLLREQFNLRMQAGNGQLQHTHLLKEVRKNLAYVKMLINEEKKGRNNNG |
| Source of smORF | Swiss-Prot |
| Function | |
| Pubmed ID | 12219091 |
| Domain | |
| Functional Category | Ribosomal_protein |
| Uniprot ID | Q8D204 |
| ORF Length (Amino Acid) | 68 |
++ More..
| Conservation Analysis |
No. of Species: 319
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 477070 | 477261 | + | NZ_CP042220.2 | Dickeya poaceiphila |
| 2 | 4043447 | 4043638 | - | NZ_LT615367.1 | Dickeya aquatica |
| 3 | 455021 | 455212 | + | NC_012880.1 | Musicola paradisiaca Ech703 |
| 4 | 4187248 | 4187439 | - | NZ_CP025799.1 | Dickeya zeae |
| 5 | 380343 | 380534 | + | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 6 | 4387154 | 4387345 | - | NC_014500.1 | Dickeya dadantii 3937 |
| 7 | 3318774 | 3318965 | + | NZ_CP009460.1 | Dickeya fangzhongdai |
| 8 | 108042 | 108233 | + | NZ_CP015581.1 | Tatumella citrea |
| 9 | 610734 | 610925 | + | NZ_CP005974.1 | Photobacterium gaetbulicola Gung47 |
| 10 | 4255203 | 4255394 | - | NZ_CP050150.1 | Hafnia alvei |
| 11 | 2702241 | 2702432 | - | NZ_CP016414.1 | Vibrio scophthalmi |
| 12 | 457645 | 457836 | - | NZ_CP022355.1 | Paraphotobacterium marinum |
| 13 | 270171 | 270362 | + | NZ_CP071325.1 | Photobacterium ganghwense |
| 14 | 2620016 | 2620207 | - | NZ_CP009977.1 | Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 |
| 15 | 124994 | 125185 | - | NC_013456.1 | Vibrio antiquarius |
| 16 | 2996135 | 2996326 | - | NZ_CP031781.1 | Vibrio parahaemolyticus |
| 17 | 5493839 | 5494030 | - | NC_005126.1 | Photorhabdus laumondii subsp. laumondii TTO1 |
| 18 | 587711 | 587902 | + | NZ_CP070624.1 | Photobacterium damselae subsp. damselae |
| 19 | 1643860 | 1644051 | - | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 20 | 2139388 | 2139579 | + | NZ_CP047495.1 | Pectobacterium brasiliense |
| 21 | 481167 | 481358 | + | NZ_CP051652.1 | Pectobacterium carotovorum |
| 22 | 522216 | 522407 | + | NZ_CP065044.1 | Pectobacterium aroidearum |
| 23 | 4392818 | 4393009 | - | NZ_CP034938.1 | Pectobacterium odoriferum |
| 24 | 3205623 | 3205814 | - | NZ_CP017482.1 | Pectobacterium polaris |
| 25 | 4737436 | 4737627 | + | NZ_CP015749.1 | Pectobacterium parmentieri |
| 26 | 1134004 | 1134195 | - | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 27 | 2171430 | 2171621 | + | NZ_CP046793.1 | Vibrio metschnikovii |
| 28 | 4232379 | 4232570 | - | NZ_CP038498.1 | Pectobacterium punjabense |
| 29 | 306492 | 306683 | + | NZ_CP040021.1 | Salinivibrio kushneri |
| 30 | 4402280 | 4402471 | - | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 31 | 2986162 | 2986353 | - | NZ_CP044060.1 | Aeromonas veronii |
| 32 | 3242475 | 3242666 | - | NZ_CP065745.1 | Aeromonas allosaccharophila |
| 33 | 4452966 | 4453157 | - | NZ_AP022188.1 | Aeromonas media |
| 34 | 331747 | 331938 | + | NZ_CP050851.1 | Aeromonas hydrophila |
| 35 | 4296001 | 4296192 | - | NZ_LR134376.1 | Aeromonas encheleia |
| 36 | 3819190 | 3819381 | + | NZ_CP051883.1 | Aeromonas salmonicida |
| 37 | 3434365 | 3434556 | + | NZ_CP031961.1 | Pseudoalteromonas tunicata |
| 38 | 972016 | 972207 | - | NZ_CP014056.2 | Grimontia hollisae |
| 39 | 111909 | 112103 | - | NZ_CP072844.1 | Psychrosphaera aestuarii |
| 40 | 167294 | 167485 | + | NZ_CP011041.1 | Pseudoalteromonas tetraodonis |
| 41 | 172239 | 172430 | + | NZ_CP011030.1 | Pseudoalteromonas issachenkonii |
| 42 | 180566 | 180757 | + | NZ_CP033065.1 | Pseudoalteromonas agarivorans |
| 43 | 248415 | 248606 | + | NZ_CP032090.1 | Pseudoalteromonas donghaensis |
| 44 | 183524 | 183715 | + | NZ_CP023464.1 | Pseudoalteromonas atlantica |
| 45 | 179328 | 179519 | + | NZ_CP011028.1 | Pseudoalteromonas espejiana DSM 9414 |
| 46 | 303456 | 303647 | + | NZ_CP031416.1 | Gallaecimonas mangrovi |
| 47 | 19304 | 19495 | + | NZ_CP016180.1 | Pasteurella skyensis |
| 48 | 3824373 | 3824564 | - | NZ_CP012621.1 | Zobellella denitrificans |
| 49 | 160761 | 160952 | + | NC_007481.1 | Pseudoalteromonas translucida |
| 50 | 161633 | 161824 | + | NZ_CP011036.1 | Pseudoalteromonas nigrifaciens |
| 51 | 1192459 | 1192650 | - | NZ_LR134327.1 | Aggregatibacter aphrophilus ATCC 33389 |
| 52 | 983793 | 983984 | - | NZ_CP048812.1 | Halomonas socia |
| 53 | 1088540 | 1088731 | + | NZ_CP028926.1 | Pasteurella multocida |
| 54 | 3426311 | 3426502 | - | NZ_CP027523.1 | Pseudoalteromonas carrageenovora |
| 55 | 87788 | 87979 | + | NZ_CP018804.1 | Histophilus somni |
| 56 | 130896 | 131087 | - | NZ_LR134167.1 | Avibacterium volantium |
| 57 | 3540921 | 3541112 | - | NZ_CP011025.1 | Pseudoalteromonas arctica A 37-1-2 |
| 58 | 2069530 | 2069721 | + | NZ_CP019628.1 | Pseudoalteromonas aliena |
| 59 | 2042885 | 2043076 | + | NZ_CP030753.1 | Actinobacillus pleuropneumoniae |
| 60 | 1917916 | 1918107 | - | NZ_CP007715.1 | Actinobacillus equuli subsp. equuli |
| 61 | 1912618 | 1912809 | - | NZ_CP009159.1 | Actinobacillus suis ATCC 33415 |
| 62 | 2618803 | 2618994 | + | NZ_CP036200.1 | Shewanella maritima |
| 63 | 2096378 | 2096569 | - | NZ_CP016605.1 | Bisgaardia hudsonensis |
| 64 | 588214 | 588405 | + | NZ_CP015029.1 | Frederiksenia canicola |
| 65 | 2014082 | 2014273 | + | NZ_LT906448.1 | Pasteurella dagmatis |
| 66 | 1967454 | 1967645 | - | NZ_CP016604.1 | Otariodibacter oris |
| 67 | 616776 | 616967 | + | NZ_LS483443.1 | Aggregatibacter segnis ATCC 33393 |
| 68 | 3589017 | 3589208 | - | NZ_CP040449.1 | Aeromonas simiae |
| 69 | 226556 | 226747 | + | NZ_CP069213.1 | Shewanella litorisediminis |
| 70 | 256398 | 256589 | + | NC_008700.1 | Shewanella amazonensis SB2B |
| 71 | 4415545 | 4415736 | + | NZ_CP020373.1 | Shewanella khirikhana |
| 72 | 4677727 | 4677918 | - | NZ_CP046378.1 | Shewanella algae |
| 73 | 3639466 | 3639657 | - | NZ_CP021435.1 | Halomonas beimenensis |
| 74 | 697720 | 697911 | + | NZ_CP029206.1 | Actinobacillus porcitonsillarum |
| 75 | 491235 | 491426 | + | NZ_CP017689.1 | Thalassotalea crassostreae |
| 76 | 168231 | 168422 | + | NZ_CP006954.1 | Bibersteinia trehalosi USDA-ARS-USMARC-188 |
| 77 | 2056119 | 2056310 | - | NZ_CP006944.1 | Mannheimia varigena USDA-ARS-USMARC-1312 |
| 78 | 334585 | 334776 | - | NZ_CP046531.1 | Mannheimia ovis |
| 79 | 538683 | 538874 | + | NZ_CP061280.1 | Mannheimia bovis |
| 80 | 363087 | 363278 | - | NZ_CP055305.1 | Mannheimia pernigra |
| 81 | 1593665 | 1593856 | + | NC_011852.1 | Glaesserella parasuis SH0165 |
| 82 | 2548405 | 2548596 | - | NC_021883.1 | Mannheimia haemolytica USMARC_2286 |
| 83 | 1967510 | 1967701 | + | NZ_CP018139.1 | Halomonas aestuarii |
| 84 | 288938 | 289129 | + | NC_014532.2 | Halomonas elongata DSM 2581 |
| 85 | 132456 | 132647 | + | NZ_CP014226.1 | Halomonas chromatireducens |
| 86 | 1604196 | 1604387 | - | NZ_CP015031.1 | Basfia succiniciproducens |
| 87 | 2001829 | 2002020 | - | NC_006300.1 | [Mannheimia] succiniciproducens MBEL55E |
| 88 | 3028214 | 3028405 | - | NZ_CP043420.1 | Kushneria phosphatilytica |
| 89 | 2323492 | 2323683 | + | NZ_CP041660.1 | Catenovulum sediminis |
| 90 | 4013767 | 4013958 | - | NZ_CP037951.1 | Parashewanella tropica |
| 91 | 519911 | 520102 | - | NZ_CP042382.1 | Pistricoccus aurantiacus |
| 92 | 410243 | 410434 | - | NZ_LT906463.1 | Haemophilus pittmaniae |
| 93 | 3932028 | 3932219 | - | NZ_CP065435.1 | Halomonas sp. SS10-MC5 |
| 94 | 905183 | 905374 | + | NZ_CP015425.1 | [Haemophilus] ducreyi |
| 95 | 547287 | 547478 | + | NZ_CP031415.1 | Saccharospirillum mangrovi |
| 96 | 205832 | 206023 | - | NZ_CP009610.1 | Haemophilus influenzae |
| 97 | 301461 | 301652 | - | NZ_LS483458.1 | Haemophilus haemolyticus |
| 98 | 216126 | 216317 | - | NZ_LS483429.1 | Haemophilus aegyptius |
| 99 | 241847 | 242038 | + | NZ_CP022358.1 | Shewanella bicestrii |
| 100 | 2398076 | 2398270 | - | NZ_AP018725.1 | Sulfuriflexus mobilis |
| 101 | 330891 | 331082 | + | NZ_AP018933.1 | Zymobacter palmae |
| 102 | 5303612 | 5303803 | - | NZ_CP037952.1 | Parashewanella spongiae |
| 103 | 1021521 | 1021712 | + | NZ_LR134510.1 | Actinobacillus delphinicola |
| 104 | 640993 | 641190 | + | NZ_AP018724.1 | Sulfurivermis fontis |
| 105 | 4434807 | 4434998 | - | NZ_CP041036.1 | Shewanella polaris |
| 106 | 127507 | 127698 | + | NC_012691.1 | Tolumonas auensis DSM 9187 |
| 107 | 761757 | 761945 | - | NZ_CP021323.1 | Kushneria konosiri |
| 108 | 2537556 | 2537744 | + | NZ_CP021358.1 | Kushneria marisflavi |
| 109 | 6025854 | 6026045 | - | NZ_CP007142.1 | Gynuella sunshinyii YC6258 |
| 110 | 2048337 | 2048528 | - | NC_006512.1 | Idiomarina loihiensis L2TR |
| 111 | 172416 | 172607 | + | NZ_CP022272.1 | Shewanella marisflavi |
| 112 | 183724 | 183915 | + | NC_009092.1 | Shewanella loihica PV-4 |
| 113 | 5020391 | 5020582 | - | NC_010334.1 | Shewanella halifaxensis HAW-EB4 |
| 114 | 2095817 | 2096008 | + | NC_011566.1 | Shewanella piezotolerans WP3 |
| 115 | 5280155 | 5280346 | - | NC_009831.1 | Shewanella sediminis HAW-EB3 |
| 116 | 5651808 | 5651999 | - | NC_010506.1 | Shewanella woodyi ATCC 51908 |
| 117 | 369505 | 369696 | + | NZ_CP051183.1 | Bermanella marisrubri |
| 118 | 4750272 | 4750463 | - | NC_014012.1 | Shewanella violacea DSS12 |
| 119 | 407573 | 407764 | + | NZ_CP014782.1 | Shewanella psychrophila |
| 120 | 214926 | 215117 | + | NC_009901.1 | Shewanella pealeana ATCC 700345 |
| 121 | 1774564 | 1774755 | - | NZ_CP070273.1 | Marinomonas foliarum |
| 122 | 255866 | 256057 | + | NC_015276.1 | Marinomonas mediterranea MMB-1 |
| 123 | 3197153 | 3197344 | + | NZ_CP014476.1 | Methylomonas denitrificans |
| 124 | 345639 | 345833 | + | NZ_AP012273.1 | Thiolapillus brandeum |
| 125 | 611350 | 611541 | + | NC_012560.1 | Azotobacter vinelandii DJ |
| 126 | 5639164 | 5639355 | - | NZ_CP048878.1 | Spartinivicinus ruber |
| 127 | 201232 | 201426 | - | NC_016893.1 | Wigglesworthia glossinidia endosymbiont of Glossina morsitans morsitans (Yale colony) |
| 128 | 3262067 | 3262258 | + | NZ_CP037953.1 | Permianibacter aggregans |
| 129 | 3004677 | 3004862 | - | NZ_CP015249.1 | Dokdonella koreensis DS-123 |
| 130 | 200815 | 201006 | + | NC_007954.1 | Shewanella denitrificans OS217 |
| 131 | 361633 | 361824 | + | NZ_CP011797.1 | Reinekea forsetii |
| 132 | 626761 | 626952 | + | NZ_AP014862.1 | Pseudomonas furukawaii |
| 133 | 171801 | 171992 | + | NZ_CP007030.1 | Thiomicrospira aerophila AL3 |
| 134 | 3419826 | 3420017 | + | NZ_CP041783.1 | Shewanella donghaensis |
| 135 | 427260 | 427451 | + | NZ_CP034015.1 | Shewanella livingstonensis |
| 136 | 175062 | 175253 | + | NC_008345.1 | Shewanella frigidimarina NCIMB 400 |
| 137 | 4742284 | 4742475 | - | NZ_CP020472.1 | Shewanella japonica |
| 138 | 252589 | 252780 | + | NC_016901.1 | Shewanella baltica OS678 |
| 139 | 3789526 | 3789717 | - | NZ_CP020931.1 | Marinobacter salarius |
| 140 | 233623 | 233814 | + | NZ_CP061941.1 | Marinomonas algicola |
| 141 | 1577209 | 1577400 | + | NZ_CP014143.1 | Microbulbifer aggregans |
| 142 | 2626518 | 2626721 | - | NZ_CP017415.1 | Acidihalobacter yilgarnenesis |
| 143 | 4273281 | 4273472 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 144 | 4396231 | 4396422 | - | NZ_CP009756.1 | Enterobacter cloacae |
| 145 | 390625 | 390816 | + | NC_017506.1 | Marinobacter adhaerens HP15 |
| 146 | 418005 | 418196 | + | NZ_CP014322.1 | Alteromonas addita |
| 147 | 3728538 | 3728729 | - | NC_015554.1 | Alteromonas naphthalenivorans |
| 148 | 808703 | 808894 | + | NZ_CP043042.1 | Marinobacter fonticola |
| 149 | 726455 | 726646 | + | NZ_CP011494.1 | Marinobacter psychrophilus |
| 150 | 3330787 | 3330978 | - | NZ_CP029185.2 | Limnobaculum parvum |
| 151 | 373238 | 373429 | + | NZ_LS483470.1 | Leminorella richardii |
| 152 | 308899 | 309090 | + | NZ_LR134531.1 | Pragia fontium |
| 153 | 3799569 | 3799760 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 154 | 226826 | 227017 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 155 | 3886917 | 3887108 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 156 | 3964272 | 3964463 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 157 | 80807 | 80998 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 158 | 4054161 | 4054352 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 159 | 408233 | 408424 | + | NZ_CP035129.1 | Kosakonia cowanii |
| 160 | 2693153 | 2693344 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 161 | 4443214 | 4443405 | - | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 162 | 711873 | 712064 | - | NZ_CP040428.1 | Jejubacter calystegiae |
| 163 | 425420 | 425611 | + | NZ_CP041247.1 | Raoultella electrica |
| 164 | 453854 | 454045 | + | NZ_CP014007.2 | Kosakonia oryzae |
| 165 | 1252813 | 1253004 | - | NZ_CP026047.1 | Raoultella planticola |
| 166 | 463759 | 463950 | + | NZ_CP046672.1 | Raoultella ornithinolytica |
| 167 | 4870195 | 4870386 | - | NZ_CP015113.1 | Kosakonia radicincitans |
| 168 | 303270 | 303461 | + | NZ_CP046670.1 | Alteromonas mediterranea |
| 169 | 1386174 | 1386365 | + | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 170 | 313484 | 313675 | + | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 171 | 454278 | 454469 | + | NZ_CP008849.1 | Alteromonas australica |
| 172 | 2369859 | 2370050 | - | NZ_CP057657.1 | Escherichia fergusonii |
| 173 | 3448568 | 3448759 | - | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 174 | 4183708 | 4183899 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 175 | 138839 | 139030 | + | NZ_CP047349.1 | Proteus terrae subsp. cibarius |
| 176 | 3586908 | 3587099 | + | NC_010554.1 | Proteus mirabilis HI4320 |
| 177 | 311737 | 311928 | + | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 178 | 1264308 | 1264499 | - | NZ_CP007230.1 | Yersinia similis |
| 179 | 3561515 | 3561706 | + | NZ_CP045300.1 | Kosakonia arachidis |
| 180 | 4893153 | 4893344 | - | NZ_CP048784.1 | Serratia liquefaciens |
| 181 | 4937124 | 4937315 | - | NZ_LR134494.1 | Serratia quinivorans |
| 182 | 5009178 | 5009369 | - | NC_015567.1 | Serratia plymuthica AS9 |
| 183 | 2025133 | 2025324 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 184 | 3432951 | 3433142 | - | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 185 | 4199294 | 4199485 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 186 | 4292217 | 4292408 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 187 | 240778 | 240969 | + | NZ_LR134201.1 | Cedecea lapagei |
| 188 | 3007416 | 3007607 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 189 | 2854778 | 2854969 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 190 | 4054494 | 4054685 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 191 | 4628334 | 4628525 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 192 | 832736 | 832927 | + | NZ_CP035467.1 | Methylotuvimicrobium buryatense |
| 193 | 580977 | 581168 | + | NZ_AP021888.1 | Thiosulfativibrio zosterae |
| 194 | 1115439 | 1115630 | - | NZ_CP065640.1 | Serratia rubidaea |
| 195 | 3304652 | 3304846 | - | NZ_CP043869.1 | Neptunomonas concharum |
| 196 | 4806682 | 4806873 | - | NZ_LT906479.1 | Serratia ficaria |
| 197 | 2903104 | 2903295 | + | NZ_CP014136.1 | Gibbsiella quercinecans |
| 198 | 3859165 | 3859356 | - | NC_016112.1 | Methylotuvimicrobium alcaliphilum 20Z |
| 199 | 136301 | 136492 | + | NC_015581.1 | Thiomicrospira cyclica ALM1 |
| 200 | 395848 | 396039 | + | NZ_AP023184.1 | Buttiauxella agrestis |
| 201 | 461528 | 461719 | + | NZ_CP045845.1 | Kluyvera intermedia |
| 202 | 4176216 | 4176407 | - | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 203 | 428652 | 428843 | + | NZ_LR134475.1 | Klebsiella aerogenes |
| 204 | 236256 | 236447 | + | NZ_CP023525.1 | Cedecea neteri |
| 205 | 424847 | 425038 | + | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 206 | 4866194 | 4866385 | - | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 207 | 434382 | 434573 | + | NZ_CP054254.1 | Klebsiella variicola |
| 208 | 426987 | 427178 | + | NZ_CP050508.1 | Raoultella terrigena |
| 209 | 507533 | 507724 | + | NZ_CP060111.1 | Klebsiella michiganensis |
| 210 | 546682 | 546873 | + | NZ_CP036175.1 | Klebsiella huaxiensis |
| 211 | 173671 | 173862 | + | NZ_CP009056.1 | Frischella perrara |
| 212 | 2118305 | 2118496 | + | NZ_CP042941.1 | Atlantibacter hermannii |
| 213 | 3951757 | 3951948 | - | NZ_LR134340.1 | Escherichia marmotae |
| 214 | 1441966 | 1442157 | - | NZ_CP053416.1 | Salmonella bongori |
| 215 | 3424575 | 3424766 | - | NZ_AP014857.1 | Escherichia albertii |
| 216 | 4346936 | 4347127 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 217 | 3830478 | 3830669 | + | NZ_CP038469.1 | Citrobacter tructae |
| 218 | 3591835 | 3592026 | - | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 219 | 2832092 | 2832283 | + | NZ_CP044098.1 | Citrobacter portucalensis |
| 220 | 2250590 | 2250781 | - | NZ_CP033744.1 | Citrobacter freundii |
| 221 | 1657375 | 1657566 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
| 222 | 4761695 | 4761886 | + | NC_013716.1 | Citrobacter rodentium ICC168 |
| 223 | 24999 | 25190 | - | NZ_CP045205.1 | Citrobacter telavivensis |
| 224 | 4229059 | 4229250 | + | NZ_CP028271.1 | Mixta intestinalis |
| 225 | 3612280 | 3612471 | - | NZ_CP034148.1 | Pantoea agglomerans |
| 226 | 459093 | 459284 | + | NZ_CP045720.1 | Pantoea eucalypti |
| 227 | 469229 | 469420 | + | NZ_CP038853.1 | Pantoea vagans |
| 228 | 483191 | 483382 | + | NZ_CP006569.1 | Sodalis praecaptivus |
| 229 | 1713320 | 1713514 | - | NZ_LR699114.1 | Aquicella lusitana |
| 230 | 4102488 | 4102679 | - | NZ_LS483422.1 | Providencia heimbachae |
| 231 | 4143651 | 4143842 | - | NZ_CP034752.1 | Jinshanibacter zhutongyuii |
| 232 | 3486478 | 3486669 | - | NZ_FO704551.1 | Xenorhabdus poinarii G6 |
| 233 | 275720 | 275911 | + | NZ_FO704550.1 | Xenorhabdus doucetiae |
| 234 | 3165816 | 3166007 | - | NZ_CP060401.1 | Xenorhabdus nematophila |
| 235 | 4192449 | 4192640 | - | NZ_CP072455.1 | Xenorhabdus budapestensis |
| 236 | 3161347 | 3161538 | - | NZ_CP016176.1 | Xenorhabdus hominickii |
| 237 | 405477 | 405668 | + | NZ_CP061511.1 | Mixta calida |
| 238 | 480094 | 480285 | + | NZ_CP026377.1 | Mixta gaviniae |
| 239 | 421894 | 422085 | + | NC_016041.1 | Glaciecola nitratireducens FR1064 |
| 240 | 336329 | 336517 | + | NZ_CP029556.1 | Lysobacter oculi |
| 241 | 4062580 | 4062771 | - | NC_013892.1 | Xenorhabdus bovienii SS-2004 |
| 242 | 3481743 | 3481934 | - | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 243 | 316910 | 317101 | + | NZ_CP023567.1 | Erwinia pyrifoliae |
| 244 | 218227 | 218427 | + | NZ_CP015230.1 | Epibacterium mobile F1926 |
| 245 | 4096903 | 4097094 | - | NZ_CP048796.1 | Providencia vermicola |
| 246 | 974058 | 974249 | + | NZ_CP029736.1 | Providencia rettgeri |
| 247 | 3564663 | 3564854 | - | NZ_CP031123.2 | Providencia huaxiensis |
| 248 | 4872761 | 4872952 | - | NC_012962.1 | Photorhabdus asymbiotica |
| 249 | 1682002 | 1682193 | - | NZ_CP011104.1 | Photorhabdus thracensis |
| 250 | 1787332 | 1787523 | + | NZ_CP065150.1 | Vibrio kanaloae |
| 251 | 2975575 | 2975766 | - | NC_011753.2 | Vibrio atlanticus |
| 252 | 312625 | 312816 | + | NZ_CP039700.1 | Vibrio cyclitrophicus |
| 253 | 376326 | 376517 | + | NZ_CP061527.1 | Shigella dysenteriae |
| 254 | 1708198 | 1708389 | + | NZ_CP026364.1 | Proteus hauseri |
| 255 | 340192 | 340383 | + | NZ_CP071320.1 | Serratia ureilytica |
| 256 | 4070503 | 4070694 | - | NZ_CP016948.1 | Serratia surfactantfaciens |
| 257 | 4842405 | 4842596 | - | NZ_CP038662.1 | Serratia nematodiphila |
| 258 | 2590352 | 2590543 | - | NZ_CP009787.1 | Yersinia rohdei |
| 259 | 3007426 | 3007617 | + | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 260 | 1568019 | 1568210 | + | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 261 | 4364585 | 4364776 | - | NZ_CP043727.1 | Yersinia canariae |
| 262 | 336370 | 336561 | + | NZ_CP011118.1 | Yersinia enterocolitica |
| 263 | 4378691 | 4378882 | - | NZ_CP032487.1 | Yersinia hibernica |
| 264 | 140799 | 140990 | + | NZ_CP046293.1 | Yersinia intermedia |
| 265 | 505241 | 505432 | + | NZ_CP014544.1 | Zhongshania aliphaticivorans |
| 266 | 2716930 | 2717121 | - | NZ_AP019651.1 | Vibrio taketomensis |
| 267 | 2853393 | 2853584 | - | NZ_CP032093.1 | Vibrio alfacsensis |
| 268 | 3184255 | 3184446 | + | NZ_AP019657.1 | Vibrio ponticus |
| 269 | 408956 | 409147 | + | NZ_CP044069.1 | Vibrio vulnificus |
| 270 | 280258 | 280449 | + | NZ_CP030788.1 | Vibrio campbellii |
| 271 | 255227 | 255418 | + | NZ_CP009354.1 | Vibrio tubiashii ATCC 19109 |
| 272 | 2822526 | 2822717 | - | NZ_CP018312.1 | Vibrio rotiferianus |
| 273 | 1543835 | 1544026 | - | NZ_CP019959.1 | Vibrio owensii |
| 274 | 487958 | 488149 | + | NZ_CP009467.1 | Vibrio harveyi |
| 275 | 1956313 | 1956504 | - | NZ_CP025792.1 | Vibrio jasicida 090810c |
| 276 | 424113 | 424304 | + | NZ_LN907827.1 | Erwinia gerundensis |
| 277 | 1193918 | 1194109 | + | NZ_CP023536.1 | Providencia alcalifaciens |
| 278 | 2446180 | 2446371 | - | NZ_CP049115.1 | Pantoea stewartii |
| 279 | 459615 | 459806 | + | NC_017554.1 | Pantoea ananatis PA13 |
| 280 | 4586657 | 4586848 | - | NC_014306.1 | Erwinia billingiae Eb661 |
| 281 | 4032625 | 4032816 | + | NZ_CP067057.1 | Rahnella aceris |
| 282 | 5172657 | 5172848 | - | NZ_CP020038.1 | Agarilytica rhodophyticola |
| 283 | 1160654 | 1160857 | + | NZ_CP016268.1 | Woeseia oceani |
| 284 | 404569 | 404760 | + | NZ_CP046268.1 | Vibrio spartinae |
| 285 | 1185771 | 1185962 | - | NZ_CP019706.1 | Pantoea alhagi |
| 286 | 2939668 | 2939859 | - | NZ_LT960611.1 | Vibrio tapetis subsp. tapetis |
| 287 | 3502714 | 3502914 | - | NZ_CP035704.1 | Pseudolysobacter antarcticus |
| 288 | 319176 | 319367 | + | NZ_CP065534.1 | Lonsdalea populi |
| 289 | 747008 | 747199 | - | NZ_CP023009.1 | Lonsdalea britannica |
| 290 | 347311 | 347502 | + | NZ_CP047475.1 | Vibrio astriarenae |
| 291 | 524771 | 524968 | - | NC_004545.1 | Buchnera aphidicola str. Bp (Baizongia pistaciae) |
| 292 | 2462093 | 2462284 | - | NZ_CP022741.1 | Vibrio qinghaiensis |
| 293 | 3528382 | 3528573 | - | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 294 | 2278126 | 2278317 | - | NZ_CP035688.1 | Vibrio metoecus |
| 295 | 2620372 | 2620563 | - | NZ_AP014524.1 | Vibrio cholerae MS6 |
| 296 | 3096292 | 3096483 | + | NZ_CP014035.2 | Vibrio fluvialis |
| 297 | 282760 | 282951 | + | NZ_AP018689.1 | Vibrio aphrogenes |
| 298 | 317638 | 317829 | + | NZ_AP018685.1 | Vibrio rumoiensis |
| 299 | 2525517 | 2525708 | + | NZ_CP011078.1 | Yersinia ruckeri |
| 300 | 368050 | 368241 | + | NC_011312.1 | Aliivibrio salmonicida LFI1238 |
| 301 | 152894 | 153085 | + | NZ_CP034035.1 | Brenneria rubrifaciens |
| 302 | 4801001 | 4801192 | + | NZ_CP014137.1 | Brenneria goodwinii |
| 303 | 157075 | 157266 | + | NZ_CP007445.1 | Gilliamella apicola |
| 304 | 3112398 | 3112589 | - | NZ_AP014635.1 | Vibrio tritonius |
| 305 | 2545787 | 2545978 | - | NZ_CP033078.1 | Vibrio zhugei |
| 306 | 121350 | 121541 | - | NZ_CP040990.1 | Vibrio furnissii |
| 307 | 2868342 | 2868533 | - | NZ_LS483250.1 | Moritella yayanosii |
| 308 | 4131288 | 4131479 | + | NZ_CP044399.1 | Moritella marina ATCC 15381 |
| 309 | 2851611 | 2851802 | - | NZ_CP045350.1 | Vibrio aquimaris |
| 310 | 489225 | 489416 | + | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 311 | 237269 | 237460 | + | NZ_CP028897.1 | Dongshaea marina |
| 312 | 3776328 | 3776519 | + | NZ_CP051180.1 | Ferrimonas lipolytica |
| 313 | 1823437 | 1823628 | + | NZ_CP040863.1 | Rodentibacter heylii |
| 314 | 313416 | 313607 | + | NC_014541.1 | Ferrimonas balearica DSM 9799 |
| 315 | 4878006 | 4878197 | - | NZ_CP015839.1 | Marinobacterium aestuarii |
| 316 | 3157677 | 3157877 | + | NZ_CP011412.1 | Sedimenticola thiotaurini |
| 317 | 3137783 | 3137983 | - | NC_019940.1 | Thioflavicoccus mobilis 8321 |
| 318 | 229294 | 229491 | + | NC_002971.4 | Coxiella burnetii RSA 493 |
| 319 | 3298982 | 3299176 | - | NZ_CP012373.2 | Beggiatoa leptomitoformis |
| 320 | 2439370 | 2439567 | - | NC_011901.1 | Thioalkalivibrio sulfidiphilus HL-EbGr7 |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP042220.2
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF03947.20 | 0.99 | 317 | 1782.0 | same-strand | Ribosomal Proteins L2, C-terminal domain |
| 2 | PF00181.25 | 0.99 | 317 | 1782.0 | same-strand | Ribosomal Proteins L2, RNA binding domain |
| 3 | PF00203.23 | 0.97 | 310 | 1486 | same-strand | Ribosomal protein S19 |
| 4 | PF00237.21 | 1.0 | 318 | 1140 | same-strand | Ribosomal protein L22p/L17e |
| 5 | PF00189.22 | 1.0 | 318 | 423 | same-strand | Ribosomal protein S3, C-terminal domain |
| 6 | PF07650.19 | 1.0 | 318 | 423 | same-strand | KH domain |
| 7 | PF00252.20 | 0.99 | 317 | 0.0 | same-strand | Ribosomal protein L16p/L10e |
| 8 | PF00366.22 | 1.0 | 319 | 0.0 | same-strand | Ribosomal protein S17 |
| 9 | PF00238.21 | 0.91 | 291 | 420.0 | same-strand | Ribosomal protein L14p/L23e |
| 10 | PF17136.6 | 0.91 | 291 | 802.0 | same-strand | Ribosomal proteins 50S L24/mitochondrial 39S L24 |
| 11 | PF00467.31 | 0.64 | 203 | 802.0 | same-strand | KOW motif |
| 12 | PF00673.23 | 0.91 | 291 | 1132.0 | same-strand | ribosomal L5P family C-terminus |
| 13 | PF00281.21 | 0.91 | 291 | 1132.0 | same-strand | Ribosomal protein L5 |
| 14 | PF00253.23 | 0.87 | 276 | 1685 | same-strand | Ribosomal protein S14p/S29e |
++ More..