Result : Q8D1Z4
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 50S ribosomal protein L30 |
| NCBI Accession ID | BA000021.3 |
| Organism | Wigglesworthia glossinidia brevipalpis |
| Left | 634349 |
| Right | 634525 |
| Strand | + |
| Nucleotide Sequence | ATGAATAAATTAAAAATAACTCAAATAAAAAGCTCTATTGGATGCTTGAAAAAACATAAATCAACTTTATATGGATTAGGATTACGACATATTGGACATACTGTAATAAGACAAAATTCACCAAGATTATTAGGAATGATAAACTCTATTTCATATTTAGTAAAAATAAAGGACTAA |
| Sequence | MNKLKITQIKSSIGCLKKHKSTLYGLGLRHIGHTVIRQNSPRLLGMINSISYLVKIKD |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl00203. Profile Description: N/A. This family includes prokaryotic L30 and eukaryotic L7. |
| Pubmed ID | 12219091 |
| Domain | CDD:412218 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | Q8D1Z4 |
| ORF Length (Amino Acid) | 58 |
++ More..
| Conservation Analysis |
No. of Species: 373
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 197298 | 197477 | - | NC_016893.1 | Wigglesworthia glossinidia endosymbiont of Glossina morsitans morsitans (Yale colony) |
| 2 | 428151 | 428330 | + | NZ_LN907827.1 | Erwinia gerundensis |
| 3 | 463655 | 463834 | + | NC_017554.1 | Pantoea ananatis PA13 |
| 4 | 377273 | 377452 | + | NZ_LS483470.1 | Leminorella richardii |
| 5 | 3606461 | 3606640 | - | NZ_CP034148.1 | Pantoea agglomerans |
| 6 | 464954 | 465133 | + | NZ_CP045720.1 | Pantoea eucalypti |
| 7 | 475060 | 475239 | + | NZ_CP038853.1 | Pantoea vagans |
| 8 | 2442153 | 2442332 | - | NZ_CP049115.1 | Pantoea stewartii |
| 9 | 4868734 | 4868913 | - | NC_012962.1 | Photorhabdus asymbiotica |
| 10 | 1677973 | 1678152 | - | NZ_CP011104.1 | Photorhabdus thracensis |
| 11 | 5489800 | 5489979 | - | NC_005126.1 | Photorhabdus laumondii subsp. laumondii TTO1 |
| 12 | 1197969 | 1198148 | + | NZ_CP023536.1 | Providencia alcalifaciens |
| 13 | 312932 | 313111 | + | NZ_LR134531.1 | Pragia fontium |
| 14 | 4139631 | 4139810 | - | NZ_CP034752.1 | Jinshanibacter zhutongyuii |
| 15 | 2018365 | 2018544 | + | NZ_CP023706.1 | Edwardsiella tarda |
| 16 | 291326 | 291505 | + | NZ_CP016043.1 | Edwardsiella hoshinae |
| 17 | 3474338 | 3474517 | - | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 18 | 317521 | 317700 | + | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 19 | 1412835 | 1413014 | - | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 20 | 1181470 | 1181649 | - | NZ_CP019706.1 | Pantoea alhagi |
| 21 | 2122346 | 2122525 | + | NZ_CP042941.1 | Atlantibacter hermannii |
| 22 | 1639835 | 1640014 | - | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 23 | 4092862 | 4093041 | - | NZ_CP048796.1 | Providencia vermicola |
| 24 | 978104 | 978283 | + | NZ_CP029736.1 | Providencia rettgeri |
| 25 | 3560629 | 3560808 | - | NZ_CP031123.2 | Providencia huaxiensis |
| 26 | 459062 | 459241 | + | NC_012880.1 | Musicola paradisiaca Ech703 |
| 27 | 4420012 | 4420191 | - | NZ_CP031560.1 | Dickeya dianthicola |
| 28 | 3482446 | 3482625 | - | NZ_FO704551.1 | Xenorhabdus poinarii G6 |
| 29 | 4058544 | 4058723 | - | NC_013892.1 | Xenorhabdus bovienii SS-2004 |
| 30 | 3161782 | 3161961 | - | NZ_CP060401.1 | Xenorhabdus nematophila |
| 31 | 4098451 | 4098630 | - | NZ_LS483422.1 | Providencia heimbachae |
| 32 | 4188415 | 4188594 | - | NZ_CP072455.1 | Xenorhabdus budapestensis |
| 33 | 3157313 | 3157492 | - | NZ_CP016176.1 | Xenorhabdus hominickii |
| 34 | 279765 | 279944 | + | NZ_FO704550.1 | Xenorhabdus doucetiae |
| 35 | 4889127 | 4889306 | - | NZ_CP048784.1 | Serratia liquefaciens |
| 36 | 1390212 | 1390391 | + | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 37 | 1311214 | 1311393 | - | NZ_CP011254.1 | Serratia fonticola |
| 38 | 4802651 | 4802830 | - | NZ_LT906479.1 | Serratia ficaria |
| 39 | 5005153 | 5005332 | - | NC_015567.1 | Serratia plymuthica AS9 |
| 40 | 2529554 | 2529733 | + | NZ_CP011078.1 | Yersinia ruckeri |
| 41 | 4933100 | 4933279 | - | NZ_LR134494.1 | Serratia quinivorans |
| 42 | 2586326 | 2586505 | - | NZ_CP009787.1 | Yersinia rohdei |
| 43 | 3011464 | 3011643 | + | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 44 | 1572057 | 1572236 | + | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 45 | 315790 | 315969 | + | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 46 | 4360559 | 4360738 | - | NZ_CP043727.1 | Yersinia canariae |
| 47 | 340408 | 340587 | + | NZ_CP011118.1 | Yersinia enterocolitica |
| 48 | 4374649 | 4374828 | - | NZ_CP032487.1 | Yersinia hibernica |
| 49 | 1260267 | 1260446 | - | NZ_CP007230.1 | Yersinia similis |
| 50 | 144837 | 145016 | + | NZ_CP046293.1 | Yersinia intermedia |
| 51 | 3326767 | 3326946 | - | NZ_CP029185.2 | Limnobaculum parvum |
| 52 | 487238 | 487417 | + | NZ_CP006569.1 | Sodalis praecaptivus |
| 53 | 320943 | 321122 | + | NZ_CP023567.1 | Erwinia pyrifoliae |
| 54 | 3477722 | 3477901 | - | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 55 | 3524361 | 3524540 | - | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 56 | 4582637 | 4582816 | - | NC_014306.1 | Erwinia billingiae Eb661 |
| 57 | 4036668 | 4036847 | + | NZ_CP067057.1 | Rahnella aceris |
| 58 | 1111406 | 1111585 | - | NZ_CP065640.1 | Serratia rubidaea |
| 59 | 2907150 | 2907329 | + | NZ_CP014136.1 | Gibbsiella quercinecans |
| 60 | 156934 | 157113 | + | NZ_CP034035.1 | Brenneria rubrifaciens |
| 61 | 344235 | 344414 | + | NZ_CP071320.1 | Serratia ureilytica |
| 62 | 4066472 | 4066651 | - | NZ_CP016948.1 | Serratia surfactantfaciens |
| 63 | 4838374 | 4838553 | - | NZ_CP038662.1 | Serratia nematodiphila |
| 64 | 241465 | 241641 | + | NZ_CP006954.1 | Bibersteinia trehalosi USDA-ARS-USMARC-188 |
| 65 | 118644 | 118820 | + | NZ_CP006944.1 | Mannheimia varigena USDA-ARS-USMARC-1312 |
| 66 | 327724 | 327900 | - | NZ_CP046531.1 | Mannheimia ovis |
| 67 | 542940 | 543116 | + | NZ_CP061280.1 | Mannheimia bovis |
| 68 | 356226 | 356402 | - | NZ_CP055305.1 | Mannheimia pernigra |
| 69 | 195116 | 195292 | + | NC_021883.1 | Mannheimia haemolytica USMARC_2286 |
| 70 | 161133 | 161312 | + | NZ_CP007445.1 | Gilliamella apicola |
| 71 | 177724 | 177903 | + | NZ_CP009056.1 | Frischella perrara |
| 72 | 996273 | 996452 | - | NZ_CP072425.1 | Pseudoalteromonas viridis |
| 73 | 3590954 | 3591133 | + | NC_010554.1 | Proteus mirabilis HI4320 |
| 74 | 1712244 | 1712423 | + | NZ_CP026364.1 | Proteus hauseri |
| 75 | 142885 | 143064 | + | NZ_CP047349.1 | Proteus terrae subsp. cibarius |
| 76 | 230583 | 230762 | + | NZ_CP069213.1 | Shewanella litorisediminis |
| 77 | 260424 | 260603 | + | NC_008700.1 | Shewanella amazonensis SB2B |
| 78 | 4419575 | 4419754 | + | NZ_CP020373.1 | Shewanella khirikhana |
| 79 | 4673706 | 4673888 | - | NZ_CP046378.1 | Shewanella algae |
| 80 | 113452 | 113631 | + | NZ_CP011039.1 | Pseudoalteromonas spongiae UST010723-006 |
| 81 | 832025 | 832204 | + | NZ_CP009888.1 | Pseudoalteromonas piratica |
| 82 | 3780342 | 3780521 | + | NZ_CP051180.1 | Ferrimonas lipolytica |
| 83 | 373436 | 373615 | + | NZ_CP051183.1 | Bermanella marisrubri |
| 84 | 623938 | 624123 | + | NZ_CP004387.1 | Alcanivorax pacificus W11-5 |
| 85 | 2209350 | 2209529 | + | NZ_CP020465.1 | Cognaticolwellia beringensis |
| 86 | 2327527 | 2327688 | + | NZ_CP041660.1 | Catenovulum sediminis |
| 87 | 245872 | 246054 | + | NZ_CP022358.1 | Shewanella bicestrii |
| 88 | 2454069 | 2454230 | + | NZ_CP072133.1 | Pseudoalteromonas xiamenensis |
| 89 | 23546 | 23725 | + | NZ_CP016180.1 | Pasteurella skyensis |
| 90 | 1413552 | 1413731 | - | NC_011852.1 | Glaesserella parasuis SH0165 |
| 91 | 176439 | 176621 | + | NZ_CP022272.1 | Shewanella marisflavi |
| 92 | 187746 | 187928 | + | NC_009092.1 | Shewanella loihica PV-4 |
| 93 | 520736 | 520912 | - | NC_004545.1 | Buchnera aphidicola str. Bp (Baizongia pistaciae) |
| 94 | 3134440 | 3134619 | + | NZ_CP034759.1 | Litorilituus sediminis |
| 95 | 1171110 | 1171292 | - | NZ_CP023559.1 | Salinicola tamaricis |
| 96 | 256615 | 256797 | + | NC_016901.1 | Shewanella baltica OS678 |
| 97 | 317422 | 317601 | + | NC_014541.1 | Ferrimonas balearica DSM 9799 |
| 98 | 619094 | 619273 | + | NC_003910.7 | Colwellia psychrerythraea 34H |
| 99 | 487897 | 488082 | + | NC_007963.1 | Chromohalobacter salexigens DSM 3043 |
| 100 | 4292017 | 4292196 | - | NZ_LR134376.1 | Aeromonas encheleia |
| 101 | 2982175 | 2982354 | - | NZ_CP044060.1 | Aeromonas veronii |
| 102 | 3823189 | 3823368 | + | NZ_CP051883.1 | Aeromonas salmonicida |
| 103 | 3238488 | 3238667 | - | NZ_CP065745.1 | Aeromonas allosaccharophila |
| 104 | 4448980 | 4449159 | - | NZ_AP022188.1 | Aeromonas media |
| 105 | 335746 | 335925 | + | NZ_CP050851.1 | Aeromonas hydrophila |
| 106 | 323222 | 323401 | + | NZ_CP065534.1 | Lonsdalea populi |
| 107 | 742974 | 743153 | - | NZ_CP023009.1 | Lonsdalea britannica |
| 108 | 409518 | 409697 | + | NZ_CP061511.1 | Mixta calida |
| 109 | 481113 | 481292 | + | NZ_CP042220.2 | Dickeya poaceiphila |
| 110 | 4039416 | 4039595 | - | NZ_LT615367.1 | Dickeya aquatica |
| 111 | 484136 | 484315 | + | NZ_CP026377.1 | Mixta gaviniae |
| 112 | 399884 | 400063 | + | NZ_AP023184.1 | Buttiauxella agrestis |
| 113 | 396214 | 396393 | + | NZ_CP054058.1 | Scandinavium goeteborgense |
| 114 | 4251178 | 4251357 | - | NZ_CP050150.1 | Hafnia alvei |
| 115 | 4233100 | 4233279 | + | NZ_CP028271.1 | Mixta intestinalis |
| 116 | 4183222 | 4183401 | - | NZ_CP025799.1 | Dickeya zeae |
| 117 | 244818 | 244997 | + | NZ_LR134201.1 | Cedecea lapagei |
| 118 | 4228356 | 4228535 | - | NZ_CP038498.1 | Pectobacterium punjabense |
| 119 | 384381 | 384560 | + | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 120 | 2143420 | 2143599 | + | NZ_CP047495.1 | Pectobacterium brasiliense |
| 121 | 493264 | 493443 | + | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 122 | 485199 | 485378 | + | NZ_CP051652.1 | Pectobacterium carotovorum |
| 123 | 4383129 | 4383308 | - | NC_014500.1 | Dickeya dadantii 3937 |
| 124 | 4398256 | 4398435 | - | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 125 | 526250 | 526429 | + | NZ_CP065044.1 | Pectobacterium aroidearum |
| 126 | 4388797 | 4388976 | - | NZ_CP034938.1 | Pectobacterium odoriferum |
| 127 | 3201603 | 3201782 | - | NZ_CP017482.1 | Pectobacterium polaris |
| 128 | 4741471 | 4741650 | + | NZ_CP015749.1 | Pectobacterium parmentieri |
| 129 | 1129981 | 1130160 | - | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 130 | 3322812 | 3322991 | + | NZ_CP009460.1 | Dickeya fangzhongdai |
| 131 | 240296 | 240475 | + | NZ_CP023525.1 | Cedecea neteri |
| 132 | 4805041 | 4805220 | + | NZ_CP014137.1 | Brenneria goodwinii |
| 133 | 408612 | 408788 | + | NZ_CP046268.1 | Vibrio spartinae |
| 134 | 1963433 | 1963612 | - | NZ_CP016604.1 | Otariodibacter oris |
| 135 | 4430792 | 4430974 | - | NZ_CP041036.1 | Shewanella polaris |
| 136 | 3108371 | 3108547 | - | NZ_AP014635.1 | Vibrio tritonius |
| 137 | 1188304 | 1188483 | - | NZ_LR134327.1 | Aggregatibacter aphrophilus ATCC 33389 |
| 138 | 620958 | 621137 | + | NZ_LS483443.1 | Aggregatibacter segnis ATCC 33393 |
| 139 | 3803608 | 3803787 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 140 | 230864 | 231043 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 141 | 3882890 | 3883069 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 142 | 3960245 | 3960424 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 143 | 84846 | 85025 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 144 | 4050134 | 4050313 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 145 | 1437942 | 1438121 | - | NZ_CP053416.1 | Salmonella bongori |
| 146 | 412271 | 412450 | + | NZ_CP035129.1 | Kosakonia cowanii |
| 147 | 4172192 | 4172371 | - | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 148 | 4342912 | 4343091 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 149 | 3834510 | 3834689 | + | NZ_CP038469.1 | Citrobacter tructae |
| 150 | 3587811 | 3587990 | - | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 151 | 2689127 | 2689306 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 152 | 4439188 | 4439367 | - | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 153 | 2836125 | 2836304 | + | NZ_CP044098.1 | Citrobacter portucalensis |
| 154 | 2246569 | 2246748 | - | NZ_CP033744.1 | Citrobacter freundii |
| 155 | 3565553 | 3565732 | + | NZ_CP045300.1 | Kosakonia arachidis |
| 156 | 1661410 | 1661589 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
| 157 | 707841 | 708020 | - | NZ_CP040428.1 | Jejubacter calystegiae |
| 158 | 432689 | 432868 | + | NZ_LR134475.1 | Klebsiella aerogenes |
| 159 | 428885 | 429064 | + | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 160 | 429454 | 429633 | + | NZ_CP041247.1 | Raoultella electrica |
| 161 | 4862168 | 4862347 | - | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 162 | 4765730 | 4765909 | + | NC_013716.1 | Citrobacter rodentium ICC168 |
| 163 | 1186314 | 1186493 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 164 | 457892 | 458071 | + | NZ_CP014007.2 | Kosakonia oryzae |
| 165 | 985265 | 985444 | + | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 166 | 20976 | 21155 | - | NZ_CP045205.1 | Citrobacter telavivensis |
| 167 | 1248791 | 1248970 | - | NZ_CP026047.1 | Raoultella planticola |
| 168 | 5146194 | 5146373 | + | NZ_CP011602.1 | Phytobacter ursingii |
| 169 | 438420 | 438599 | + | NZ_CP054254.1 | Klebsiella variicola |
| 170 | 467793 | 467972 | + | NZ_CP046672.1 | Raoultella ornithinolytica |
| 171 | 431020 | 431199 | + | NZ_CP050508.1 | Raoultella terrigena |
| 172 | 4866169 | 4866348 | - | NZ_CP015113.1 | Kosakonia radicincitans |
| 173 | 511571 | 511750 | + | NZ_CP060111.1 | Klebsiella michiganensis |
| 174 | 550716 | 550895 | + | NZ_CP036175.1 | Klebsiella huaxiensis |
| 175 | 219199 | 219381 | + | NZ_CP048602.1 | Halomonas piezotolerans |
| 176 | 123298 | 123477 | + | NZ_CP016605.1 | Bisgaardia hudsonensis |
| 177 | 2541756 | 2541932 | - | NZ_CP033078.1 | Vibrio zhugei |
| 178 | 380363 | 380542 | + | NZ_CP061527.1 | Shigella dysenteriae |
| 179 | 3947732 | 3947911 | - | NZ_LR134340.1 | Escherichia marmotae |
| 180 | 2365834 | 2366013 | - | NZ_CP057657.1 | Escherichia fergusonii |
| 181 | 3428926 | 3429105 | - | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 182 | 3444543 | 3444722 | - | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 183 | 3420550 | 3420729 | - | NZ_AP014857.1 | Escherichia albertii |
| 184 | 4179683 | 4179862 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 185 | 413013 | 413189 | + | NZ_CP044069.1 | Vibrio vulnificus |
| 186 | 200668 | 200847 | - | NZ_CP009610.1 | Haemophilus influenzae |
| 187 | 297360 | 297539 | - | NZ_LS483458.1 | Haemophilus haemolyticus |
| 188 | 210964 | 211143 | - | NZ_LS483429.1 | Haemophilus aegyptius |
| 189 | 731110 | 731289 | + | NZ_LT906463.1 | Haemophilus pittmaniae |
| 190 | 1600065 | 1600244 | - | NZ_CP015031.1 | Basfia succiniciproducens |
| 191 | 1092665 | 1092844 | + | NZ_CP028926.1 | Pasteurella multocida |
| 192 | 2018207 | 2018386 | + | NZ_LT906448.1 | Pasteurella dagmatis |
| 193 | 1997697 | 1997876 | - | NC_006300.1 | [Mannheimia] succiniciproducens MBEL55E |
| 194 | 1355456 | 1355635 | - | NZ_CP040863.1 | Rodentibacter heylii |
| 195 | 3599820 | 3599999 | - | NZ_CP013187.1 | Pseudoalteromonas phenolica |
| 196 | 492014 | 492190 | + | NZ_CP009467.1 | Vibrio harveyi |
| 197 | 213630 | 213812 | + | NZ_AP022843.1 | Halomonas hydrothermalis |
| 198 | 213091 | 213273 | + | NZ_CP065135.1 | Halomonas venusta |
| 199 | 120955 | 121131 | - | NC_013456.1 | Vibrio antiquarius |
| 200 | 909284 | 909463 | + | NZ_CP015425.1 | [Haemophilus] ducreyi |
| 201 | 2712890 | 2713066 | - | NZ_AP019651.1 | Vibrio taketomensis |
| 202 | 3100348 | 3100524 | + | NZ_CP014035.2 | Vibrio fluvialis |
| 203 | 2698216 | 2698392 | - | NZ_CP016414.1 | Vibrio scophthalmi |
| 204 | 3188309 | 3188485 | + | NZ_AP019657.1 | Vibrio ponticus |
| 205 | 117310 | 117486 | - | NZ_CP040990.1 | Vibrio furnissii |
| 206 | 2274087 | 2274263 | - | NZ_CP035688.1 | Vibrio metoecus |
| 207 | 2175483 | 2175659 | + | NZ_CP046793.1 | Vibrio metschnikovii |
| 208 | 2616333 | 2616509 | - | NZ_AP014524.1 | Vibrio cholerae MS6 |
| 209 | 516004 | 516186 | - | NZ_CP042382.1 | Pistricoccus aurantiacus |
| 210 | 592369 | 592548 | + | NZ_CP015029.1 | Frederiksenia canicola |
| 211 | 422424 | 422603 | - | NZ_CP029206.1 | Actinobacillus porcitonsillarum |
| 212 | 2047006 | 2047185 | + | NZ_CP030753.1 | Actinobacillus pleuropneumoniae |
| 213 | 1913808 | 1913987 | - | NZ_CP007715.1 | Actinobacillus equuli subsp. equuli |
| 214 | 1908508 | 1908687 | - | NZ_CP009159.1 | Actinobacillus suis ATCC 33415 |
| 215 | 3507240 | 3507410 | - | NZ_CP036422.1 | Halioglobus maricola |
| 216 | 2849354 | 2849530 | - | NZ_CP032093.1 | Vibrio alfacsensis |
| 217 | 2615975 | 2616151 | - | NZ_CP009977.1 | Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 |
| 218 | 284313 | 284489 | + | NZ_CP030788.1 | Vibrio campbellii |
| 219 | 2992097 | 2992273 | - | NZ_CP031781.1 | Vibrio parahaemolyticus |
| 220 | 2818486 | 2818662 | - | NZ_CP018312.1 | Vibrio rotiferianus |
| 221 | 1539795 | 1539971 | - | NZ_CP019959.1 | Vibrio owensii |
| 222 | 1952275 | 1952451 | - | NZ_CP025792.1 | Vibrio jasicida 090810c |
| 223 | 453638 | 453817 | - | NZ_CP022355.1 | Paraphotobacterium marinum |
| 224 | 5647790 | 5647972 | - | NC_010506.1 | Shewanella woodyi ATCC 51908 |
| 225 | 3568047 | 3568223 | + | NZ_CP031961.1 | Pseudoalteromonas tunicata |
| 226 | 4738229 | 4738411 | - | NZ_CP020472.1 | Shewanella japonica |
| 227 | 131515 | 131697 | + | NC_012691.1 | Tolumonas auensis DSM 9187 |
| 228 | 112084 | 112263 | + | NZ_CP015581.1 | Tatumella citrea |
| 229 | 94671 | 94850 | + | NZ_CP018804.1 | Histophilus somni |
| 230 | 292864 | 293046 | + | NC_014532.2 | Halomonas elongata DSM 2581 |
| 231 | 3585028 | 3585210 | - | NZ_CP040449.1 | Aeromonas simiae |
| 232 | 2935636 | 2935812 | - | NZ_LT960611.1 | Vibrio tapetis subsp. tapetis |
| 233 | 757842 | 758027 | - | NZ_CP021323.1 | Kushneria konosiri |
| 234 | 604431 | 604610 | + | NC_007204.1 | Psychrobacter arcticus 273-4 |
| 235 | 4009744 | 4009926 | - | NZ_CP037951.1 | Parashewanella tropica |
| 236 | 465561 | 465740 | + | NZ_CP045845.1 | Kluyvera intermedia |
| 237 | 698126 | 698308 | - | NZ_CP059082.1 | Halomonas titanicae |
| 238 | 2989644 | 2989823 | - | NZ_CP023529.1 | Lelliottia amnigena |
| 239 | 2021109 | 2021288 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 240 | 4195270 | 4195449 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 241 | 4269257 | 4269436 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 242 | 4288193 | 4288372 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 243 | 453694 | 453873 | + | NZ_CP013990.1 | Leclercia adecarboxylata |
| 244 | 4302660 | 4302839 | - | NC_015968.1 | Enterobacter soli |
| 245 | 3011452 | 3011631 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 246 | 4392204 | 4392383 | - | NZ_CP009756.1 | Enterobacter cloacae |
| 247 | 2850754 | 2850933 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 248 | 4058530 | 4058709 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 249 | 4624310 | 4624489 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 250 | 274224 | 274385 | + | NZ_CP071325.1 | Photobacterium ganghwense |
| 251 | 136369 | 136551 | + | NZ_CP014226.1 | Halomonas chromatireducens |
| 252 | 431285 | 431473 | + | NZ_CP034015.1 | Shewanella livingstonensis |
| 253 | 179085 | 179273 | + | NC_008345.1 | Shewanella frigidimarina NCIMB 400 |
| 254 | 4746255 | 4746440 | - | NC_014012.1 | Shewanella violacea DSS12 |
| 255 | 218955 | 219140 | + | NC_009901.1 | Shewanella pealeana ATCC 700345 |
| 256 | 2099843 | 2100028 | + | NC_011566.1 | Shewanella piezotolerans WP3 |
| 257 | 5276141 | 5276305 | - | NC_009831.1 | Shewanella sediminis HAW-EB3 |
| 258 | 497715 | 497894 | + | NZ_CP017689.1 | Thalassotalea crassostreae |
| 259 | 614769 | 614948 | + | NZ_CP005974.1 | Photobacterium gaetbulicola Gung47 |
| 260 | 411596 | 411781 | + | NZ_CP014782.1 | Shewanella psychrophila |
| 261 | 316671 | 316847 | + | NZ_CP039700.1 | Vibrio cyclitrophicus |
| 262 | 5299595 | 5299777 | - | NZ_CP037952.1 | Parashewanella spongiae |
| 263 | 240279 | 240461 | + | NZ_CP027523.1 | Pseudoalteromonas carrageenovora |
| 264 | 1558441 | 1558623 | - | NZ_CP019628.1 | Pseudoalteromonas aliena |
| 265 | 1027814 | 1027993 | + | NZ_LR134510.1 | Actinobacillus delphinicola |
| 266 | 2989829 | 2990011 | - | NC_007481.1 | Pseudoalteromonas translucida |
| 267 | 3286281 | 3286463 | - | NZ_CP011036.1 | Pseudoalteromonas nigrifaciens |
| 268 | 348652 | 348834 | + | NZ_CP032090.1 | Pseudoalteromonas donghaensis |
| 269 | 2864335 | 2864514 | - | NZ_LS483250.1 | Moritella yayanosii |
| 270 | 2541472 | 2541657 | + | NZ_CP021358.1 | Kushneria marisflavi |
| 271 | 3928124 | 3928306 | - | NZ_CP065435.1 | Halomonas sp. SS10-MC5 |
| 272 | 2971543 | 2971719 | - | NC_011753.2 | Vibrio atlanticus |
| 273 | 376869 | 377051 | + | NZ_CP013106.1 | Halomonas huangheensis |
| 274 | 3605153 | 3605317 | - | NC_020888.1 | Thalassolituus oleivorans MIL-1 |
| 275 | 204841 | 205023 | + | NC_007954.1 | Shewanella denitrificans OS217 |
| 276 | 1791378 | 1791554 | + | NZ_CP065150.1 | Vibrio kanaloae |
| 277 | 3597420 | 3597602 | - | NZ_CP011025.1 | Pseudoalteromonas arctica A 37-1-2 |
| 278 | 3423884 | 3424066 | + | NZ_CP041783.1 | Shewanella donghaensis |
| 279 | 321677 | 321853 | + | NZ_AP018685.1 | Vibrio rumoiensis |
| 280 | 3353429 | 3353611 | - | NZ_CP033065.1 | Pseudoalteromonas agarivorans |
| 281 | 3411257 | 3411439 | - | NZ_CP023464.1 | Pseudoalteromonas atlantica |
| 282 | 3452174 | 3452356 | - | NZ_CP011028.1 | Pseudoalteromonas espejiana DSM 9414 |
| 283 | 307487 | 307669 | + | NZ_CP031416.1 | Gallaecimonas mangrovi |
| 284 | 1971433 | 1971615 | + | NZ_CP018139.1 | Halomonas aestuarii |
| 285 | 286799 | 286975 | + | NZ_AP018689.1 | Vibrio aphrogenes |
| 286 | 259283 | 259459 | + | NZ_CP009354.1 | Vibrio tubiashii ATCC 19109 |
| 287 | 2622831 | 2623010 | + | NZ_CP036200.1 | Shewanella maritima |
| 288 | 1551987 | 1552166 | - | NC_014147.1 | Moraxella catarrhalis BBH18 |
| 289 | 2035328 | 2035510 | - | NC_006512.1 | Idiomarina loihiensis L2TR |
| 290 | 515011 | 515190 | + | NZ_LR134167.1 | Avibacterium volantium |
| 291 | 5016367 | 5016552 | - | NC_010334.1 | Shewanella halifaxensis HAW-EB4 |
| 292 | 3820360 | 3820542 | - | NZ_CP012621.1 | Zobellella denitrificans |
| 293 | 979876 | 980058 | - | NZ_CP048812.1 | Halomonas socia |
| 294 | 310516 | 310695 | + | NZ_CP040021.1 | Salinivibrio kushneri |
| 295 | 2458064 | 2458240 | - | NZ_CP022741.1 | Vibrio qinghaiensis |
| 296 | 2477502 | 2477684 | + | NZ_CP021376.1 | Oceanisphaera avium |
| 297 | 2046548 | 2046730 | + | NZ_CP021377.1 | Oceanisphaera profunda |
| 298 | 153863 | 154042 | - | NZ_LR134343.1 | Moraxella cuniculi |
| 299 | 2997024 | 2997206 | + | NZ_CP048711.1 | Kineobactrum salinum |
| 300 | 351366 | 351542 | + | NZ_CP047475.1 | Vibrio astriarenae |
| 301 | 1581165 | 1581350 | + | NZ_CP014143.1 | Microbulbifer aggregans |
| 302 | 1697965 | 1698144 | - | NZ_CP011381.2 | Moraxella bovoculi |
| 303 | 3635549 | 3635731 | - | NZ_CP021435.1 | Halomonas beimenensis |
| 304 | 2009255 | 2009410 | - | NC_018868.3 | Simiduia agarivorans SA1 = DSM 21679 |
| 305 | 107802 | 107984 | - | NZ_CP072844.1 | Psychrosphaera aestuarii |
| 306 | 3120659 | 3120841 | - | NZ_CP011041.1 | Pseudoalteromonas tetraodonis |
| 307 | 3156207 | 3156389 | - | NZ_CP011030.1 | Pseudoalteromonas issachenkonii |
| 308 | 2847573 | 2847749 | - | NZ_CP045350.1 | Vibrio aquimaris |
| 309 | 591749 | 591928 | + | NZ_CP070624.1 | Photobacterium damselae subsp. damselae |
| 310 | 602852 | 602998 | + | NZ_CP014864.1 | Microbulbifer thermotolerans |
| 311 | 5168593 | 5168778 | - | NZ_CP020038.1 | Agarilytica rhodophyticola |
| 312 | 1262453 | 1262632 | - | NZ_LR884459.1 | Psychrobacter arenosus |
| 313 | 843754 | 843918 | + | NC_010995.1 | Cellvibrio japonicus Ueda107 |
| 314 | 334819 | 334983 | + | NZ_AP018933.1 | Zymobacter palmae |
| 315 | 241291 | 241470 | + | NZ_CP028897.1 | Dongshaea marina |
| 316 | 1253281 | 1253466 | + | NC_007912.1 | Saccharophagus degradans 2-40 |
| 317 | 968005 | 968184 | - | NZ_CP014056.2 | Grimontia hollisae |
| 318 | 4194218 | 4194400 | - | NC_018691.1 | Alcanivorax dieselolei B5 |
| 319 | 384291 | 384470 | + | NZ_CP065728.1 | Moraxella nonliquefaciens |
| 320 | 423220 | 423396 | + | NZ_CP049916.1 | Acinetobacter lanii |
| 321 | 4409588 | 4409773 | - | NZ_CP060092.1 | Teredinibacter purpureus |
| 322 | 491227 | 491370 | + | NZ_CP029331.1 | Thauera hydrothermalis |
| 323 | 982017 | 982196 | - | NZ_CP014234.1 | Moraxella osloensis |
| 324 | 1900164 | 1900352 | - | NC_010168.1 | Renibacterium salmoninarum ATCC 33209 |
| 325 | 617820 | 617984 | + | NC_014394.1 | Gallionella capsiferriformans ES-2 |
| 326 | 2900257 | 2900442 | + | NZ_CP029822.1 | Entomomonas moraniae |
| 327 | 3438586 | 3438771 | - | NZ_CP047491.1 | Microbulbifer hydrolyticus |
| 328 | 2653395 | 2653574 | - | NZ_CP030241.1 | Moraxella bovis |
| 329 | 3126400 | 3126576 | - | NC_005966.1 | Acinetobacter baylyi ADP1 |
| 330 | 643274 | 643417 | + | NZ_CP025682.1 | Azoarcus pumilus |
| 331 | 3752288 | 3752467 | - | NZ_CP008849.1 | Alteromonas australica |
| 332 | 3041644 | 3041823 | + | NC_015914.1 | Cyclobacterium marinum DSM 745 |
| 333 | 390917 | 391099 | + | NZ_CP029347.1 | Saliniradius amylolyticus |
| 334 | 2080206 | 2080349 | - | NZ_CP059560.1 | Aromatoleum petrolei |
| 335 | 193066 | 193242 | - | NZ_CP071766.1 | Acinetobacter towneri |
| 336 | 479751 | 479927 | + | NZ_CP049801.1 | Acinetobacter shaoyimingii |
| 337 | 2454252 | 2454395 | - | NZ_CP014646.1 | Thauera humireducens |
| 338 | 728454 | 728627 | + | NC_016041.1 | Glaciecola nitratireducens FR1064 |
| 339 | 458408 | 458584 | + | NZ_CP024632.1 | Acinetobacter junii |
| 340 | 411883 | 412059 | + | NZ_CP030880.1 | Acinetobacter haemolyticus |
| 341 | 2480465 | 2480641 | + | NZ_CP040105.1 | Acinetobacter nosocomialis M2 |
| 342 | 2723146 | 2723322 | - | NC_016603.1 | Acinetobacter pittii PHEA-2 |
| 343 | 450926 | 451102 | + | NZ_CP053391.1 | Acinetobacter lactucae |
| 344 | 445909 | 446085 | + | NZ_CP015121.1 | Acinetobacter baumannii |
| 345 | 480127 | 480303 | + | NZ_CP065820.1 | Acinetobacter seifertii |
| 346 | 462311 | 462487 | + | NC_014259.1 | Acinetobacter oleivorans DR1 |
| 347 | 475859 | 476035 | + | NZ_CP016895.1 | Acinetobacter larvae |
| 348 | 507593 | 507754 | + | NZ_CP019236.1 | Rhodoferax koreense |
| 349 | 6336798 | 6336989 | - | NC_007645.1 | Hahella chejuensis KCTC 2396 |
| 350 | 2397799 | 2397975 | + | NZ_CP070518.1 | Acinetobacter calcoaceticus |
| 351 | 3539042 | 3539218 | + | NZ_CP041970.1 | Acinetobacter dispersus |
| 352 | 3582100 | 3582279 | - | NZ_CP036536.1 | Salinimonas lutimaris |
| 353 | 3925508 | 3925687 | - | NZ_CP046670.1 | Alteromonas mediterranea |
| 354 | 3294880 | 3295053 | - | NZ_CP012373.2 | Beggiatoa leptomitoformis |
| 355 | 584037 | 584222 | + | NZ_CP068345.1 | Succinivibrio dextrinosolvens |
| 356 | 779307 | 779468 | + | NC_013959.1 | Sideroxydans lithotrophicus ES-1 |
| 357 | 489234 | 489410 | - | NZ_CP012808.1 | Acinetobacter equi |
| 358 | 2966411 | 2966584 | - | NC_008261.1 | Clostridium perfringens ATCC 13124 |
| 359 | 2358419 | 2358595 | - | NZ_CP045650.1 | Acinetobacter wanghuae |
| 360 | 3080947 | 3081129 | - | NZ_CP022579.1 | Oryzomicrobium terrae |
| 361 | 3052485 | 3052664 | + | NZ_CP012040.1 | Cyclobacterium amurskyense |
| 362 | 501728 | 501904 | + | NZ_CP035934.2 | Acinetobacter cumulans |
| 363 | 372099 | 372278 | + | NC_011312.1 | Aliivibrio salmonicida LFI1238 |
| 364 | 2328804 | 2328989 | - | NZ_CP031222.1 | Aquirhabdus parva |
| 365 | 746276 | 746437 | + | NZ_CP013124.1 | Pseudomonas mendocina S5.2 |
| 366 | 1369216 | 1369371 | + | NZ_LR134533.1 | Neisseria weaveri |
| 367 | 1465187 | 1465348 | - | NZ_CP070505.1 | Pseudomonas toyotomiensis |
| 368 | 1899836 | 1899991 | + | NZ_CP038033.1 | Nitrosococcus wardiae |
| 369 | 552491 | 552667 | + | NZ_CP029397.2 | Acinetobacter defluvii |
| 370 | 4569764 | 4569925 | - | NZ_CP068551.1 | Pseudomonas khazarica |
| 371 | 4145144 | 4145320 | - | NZ_AP014630.1 | Acinetobacter guillouiae |
| 372 | 1046438 | 1046599 | + | NZ_CP060009.1 | Pseudomonas sediminis |
| 373 | 4084554 | 4084739 | + | NZ_CP043473.1 | Chromobacterium paludis |
| 374 | 2217199 | 2217384 | + | NZ_CP029495.1 | Chromobacterium phragmitis |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_016893.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00411.21 | 0.82 | 304 | 2444 | same-strand | Ribosomal protein S11 |
| 2 | PF00416.24 | 0.92 | 342 | 2072 | same-strand | Ribosomal protein S13/S18 |
| 3 | PF00444.20 | 0.68 | 255 | 1811.0 | same-strand | Ribosomal protein L36 |
| 4 | PF00344.22 | 1.0 | 373 | 446.0 | same-strand | SecY |
| 5 | PF00828.21 | 0.99 | 370 | 4 | same-strand | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A |
| 6 | PF03719.17 | 1.0 | 373 | 7.0 | same-strand | Ribosomal protein S5, C-terminal domain |
| 7 | PF00333.22 | 1.0 | 373 | 7.0 | same-strand | Ribosomal protein S5, N-terminal domain |
| 8 | PF00861.24 | 0.92 | 345 | 522.0 | same-strand | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast |
| 9 | PF00347.25 | 0.98 | 366 | 885 | same-strand | Ribosomal protein L6 |
| 10 | PF00410.21 | 1.0 | 373 | 1431.0 | same-strand | Ribosomal protein S8 |
| 11 | PF00253.23 | 0.98 | 364 | 1857 | same-strand | Ribosomal protein S14p/S29e |
++ More..