Result : Q89VT6
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Aminoacyl carrier protein 1 |
| NCBI Accession ID | BA000040.2 |
| Organism | Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110) |
| Left | 1049408 |
| Right | 1049680 |
| Strand | + |
| Nucleotide Sequence | ATGCAGGCCTTCAATACCGACGTGCGCAATCGCATCATCAAGCTGGTGAAGGGCATCCTCGAACAGAACGCGCTCGCCGCGGACGTCACGCCGCAGGCCAAGCTCGTCGATGTCGGCCTGACCTCAATGGATATGGTCAATCTGATGCTCGGCGTCGAAGCCGAATTCGATTTCACCATTCCGCAGTCGGAGATCACGCCGGAGAATTTCCAGTCCGTCGAGACGCTGGAGCGGATGGTGATGACCCAGCTGCAGCCGGCGACCGCGGCTTAG |
| Sequence | MQAFNTDVRNRIIKLVKGILEQNALAADVTPQAKLVDVGLTSMDMVNLMLGVEAEFDFTIPQSEITPENFQSVETLERMVMTQLQPATAA |
| Source of smORF | Swiss-Prot |
| Function | Aminoacyl carrier protein. Can be charged with L-glycine via the formation of a thioester bond between the amino acid and the 4'-phosphopantetheinyl prosthetic group, catalyzed by the bll0957 ligase. {ECO:0000269|Pubmed:20663952}. |
| Pubmed ID | 12597275 20663952 |
| Domain | CDD:415812 |
| Functional Category | Others |
| Uniprot ID | Q89VT6 |
| ORF Length (Amino Acid) | 90 |
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| Conservation Analysis |
No. of Species: 17
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 980104 | 980376 | + | NZ_CP032617.1 | Bradyrhizobium diazoefficiens |
| 2 | 6850610 | 6850879 | + | NZ_CP032617.1 | Bradyrhizobium diazoefficiens |
| 3 | 2832066 | 2832338 | - | NZ_CP044543.1 | Bradyrhizobium betae |
| 4 | 8033448 | 8033720 | - | NZ_LS398110.1 | Bradyrhizobium vignae |
| 5 | 775055 | 775327 | + | NZ_CP022221.1 | Bradyrhizobium zhanjiangense |
| 6 | 6497750 | 6498022 | - | NZ_CP022219.1 | Bradyrhizobium guangxiense |
| 7 | 2713657 | 2713929 | + | NZ_CP050066.1 | Bradyrhizobium symbiodeficiens |
| 8 | 7122780 | 7123052 | - | NC_017082.1 | Bradyrhizobium cosmicum |
| 9 | 6542822 | 6543094 | - | NZ_CP029426.1 | Bradyrhizobium amphicarpaeae |
| 10 | 2027405 | 2027677 | - | NZ_CP029425.1 | Bradyrhizobium ottawaense |
| 11 | 7341847 | 7342119 | - | NZ_CP030051.1 | Bradyrhizobium guangdongense |
| 12 | 7052075 | 7052347 | - | NZ_CP030053.1 | Bradyrhizobium guangzhouense |
| 13 | 9738159 | 9738431 | - | NZ_CP030050.1 | Bradyrhizobium arachidis |
| 14 | 9075973 | 9076245 | - | NZ_CP058354.1 | Bradyrhizobium japonicum |
| 15 | 622576 | 622848 | + | NC_020453.1 | Bradyrhizobium oligotrophicum S58 |
| 16 | 7480022 | 7480288 | - | NZ_CP042968.1 | Bradyrhizobium paxllaeri |
| 17 | 5048491 | 5048739 | + | NZ_CP058907.1 | Rhodopseudomonas palustris |
| 18 | 1714947 | 1715177 | - | NZ_CP025086.1 | Methylovirgula ligni |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP032617.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF12860.9 | 0.76 | 13 | 3771 | opposite-strand | PAS fold |
| 2 | PF00563.22 | 0.76 | 13 | 3788 | opposite-strand | EAL domain |
| 3 | PF00990.23 | 0.76 | 13 | 3788 | opposite-strand | Diguanylate cyclase, GGDEF domain |
| 4 | PF00441.26 | 0.76 | 13 | 358 | opposite-strand | Acyl-CoA dehydrogenase, C-terminal domain |
| 5 | PF01048.22 | 0.82 | 14 | 188.5 | same-strand | Phosphorylase superfamily |
| 6 | PF01008.19 | 0.82 | 14 | 1087.0 | same-strand | Initiation factor 2 subunit family |
| 7 | PF00702.28 | 0.82 | 14 | 2292.5 | opposite-strand | haloacid dehalogenase-like hydrolase |
| 8 | PF00089.28 | 0.82 | 14 | 3017.5 | same-strand | Trypsin |
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