Result : Q89UH1
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Translation initiation factor IF-1 |
| NCBI Accession ID | BA000040.2 |
| Organism | Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110) |
| Left | 1577070 |
| Right | 1577360 |
| Strand | - |
| Nucleotide Sequence | ATGGCTAAGGAAGAGCTGATCCAGTTCGAAGGACTGGTCACCGAAATCCTCCCCGACGCCCGCTACCGCGTGCAGCTCGACGCCGGGCACGAGATCGTTGCCTACACCGCCGGCAAGATGAAGAAGAACCGCATCAAGACGCTCGCGGGCGATCGCGTGACGGTGGAGATGTCGCCCTACGATCTCGAGAAGGGCCGGCTGATTTTCCGCCACAAGGACGAACGTCCCGCAACATCCGGCGGACCGCCGCGGGGTGGCGCGCAGCGCGGTGGCCAGTTCCGCCGCCGCTAG |
| Sequence | MAKEELIQFEGLVTEILPDARYRVQLDAGHEIVAYTAGKMKKNRIKTLAGDRVTVEMSPYDLEKGRLIFRHKDERPATSGGPPRGGAQRGGQFRRR |
| Source of smORF | Swiss-Prot |
| Function | One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. {ECO:0000255|HAMAP-Rule:MF_00075}. |
| Pubmed ID | 12597275 |
| Domain | CDD:415806 |
| Functional Category | RNA-binding |
| Uniprot ID | Q89UH1 |
| ORF Length (Amino Acid) | 96 |
++ More..
| Conservation Analysis |
No. of Species: 171
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1507768 | 1508058 | - | NZ_CP032617.1 | Bradyrhizobium diazoefficiens |
| 2 | 1236469 | 1236759 | - | NZ_CP030050.1 | Bradyrhizobium arachidis |
| 3 | 8826829 | 8827119 | + | NZ_CP022221.1 | Bradyrhizobium zhanjiangense |
| 4 | 1248994 | 1249284 | - | NZ_CP030053.1 | Bradyrhizobium guangzhouense |
| 5 | 7462518 | 7462808 | + | NC_020453.1 | Bradyrhizobium oligotrophicum S58 |
| 6 | 7454412 | 7454699 | + | NZ_LS398110.1 | Bradyrhizobium vignae |
| 7 | 3309915 | 3310202 | - | NZ_CP050066.1 | Bradyrhizobium symbiodeficiens |
| 8 | 5938916 | 5939203 | + | NZ_CP029426.1 | Bradyrhizobium amphicarpaeae |
| 9 | 4203980 | 4204267 | - | NZ_CP044543.1 | Bradyrhizobium betae |
| 10 | 1071730 | 1072017 | - | NC_017082.1 | Bradyrhizobium cosmicum |
| 11 | 1327490 | 1327777 | + | NZ_CP029425.1 | Bradyrhizobium ottawaense |
| 12 | 1381158 | 1381445 | - | NZ_CP030051.1 | Bradyrhizobium guangdongense |
| 13 | 5910294 | 5910581 | + | NZ_CP022219.1 | Bradyrhizobium guangxiense |
| 14 | 7587322 | 7587609 | + | NZ_CP016428.1 | Bradyrhizobium icense |
| 15 | 439693 | 439974 | - | NC_007964.1 | Nitrobacter hamburgensis X14 |
| 16 | 1418564 | 1418851 | - | NZ_CP058354.1 | Bradyrhizobium japonicum |
| 17 | 821804 | 822091 | - | NZ_CP042968.1 | Bradyrhizobium paxllaeri |
| 18 | 760083 | 760364 | - | NC_015684.1 | Afipia carboxidovorans OM5 |
| 19 | 1837307 | 1837585 | - | NC_011894.1 | Methylobacterium nodulans ORS 2060 |
| 20 | 2976524 | 2976805 | - | NZ_CP045423.1 | Microvirga thermotolerans |
| 21 | 2640447 | 2640725 | - | NZ_CP029553.1 | Methylobacterium terrae |
| 22 | 2554668 | 2554943 | - | NZ_CP043538.1 | Methylobacterium mesophilicum SR1.6/6 |
| 23 | 3611345 | 3611620 | - | NC_010505.1 | Methylobacterium radiotolerans JCM 2831 |
| 24 | 3885565 | 3885846 | + | NZ_CP016616.1 | Microvirga ossetica |
| 25 | 1344486 | 1344764 | - | NZ_CP016616.1 | Microvirga ossetica |
| 26 | 1043407 | 1043682 | + | NZ_CP039546.1 | Methylorubrum populi |
| 27 | 3076037 | 3076312 | - | NZ_CP015367.1 | Methylobacterium phyllosphaerae |
| 28 | 3922432 | 3922707 | - | NZ_CP003811.1 | Methylobacterium oryzae CBMB20 |
| 29 | 149660 | 149935 | + | NZ_CP030126.1 | Indioceanicola profundi |
| 30 | 719620 | 719901 | - | NC_022997.1 | Hyphomicrobium nitrativorans NL23 |
| 31 | 545446 | 545718 | - | NZ_CP022113.1 | Nitrospirillum amazonense CBAmc |
| 32 | 1605311 | 1605583 | + | NZ_CP041730.1 | Chitinimonas arctica |
| 33 | 1385439 | 1385717 | + | NZ_AP019700.1 | Stella humosa |
| 34 | 138022 | 138285 | + | NZ_CP021395.1 | Bordetella hinzii |
| 35 | 1145426 | 1145686 | + | NZ_CP028324.1 | Massilia armeniaca |
| 36 | 573341 | 573601 | + | NC_009379.1 | Polynucleobacter asymbioticus QLW-P1DMWA-1 |
| 37 | 3146993 | 3147256 | + | NZ_CP016440.1 | Bordetella pseudohinzii |
| 38 | 2283461 | 2283724 | + | NZ_CP043146.1 | Bordetella holmesii |
| 39 | 2692845 | 2693120 | - | NC_009937.1 | Azorhizobium caulinodans ORS 571 |
| 40 | 1558503 | 1558763 | + | NZ_CP027666.1 | Ottowia oryzae |
| 41 | 929606 | 929878 | + | NZ_AP014946.1 | Variibacter gotjawalensis |
| 42 | 3463970 | 3464239 | + | NC_011144.1 | Phenylobacterium zucineum HLK1 |
| 43 | 2520687 | 2520959 | + | NZ_CP017147.1 | Bosea vaviloviae |
| 44 | 116390 | 116665 | + | NZ_AP018907.1 | Blastochloris tepida |
| 45 | 3599478 | 3599753 | - | NZ_CP012946.1 | Blastochloris viridis |
| 46 | 2173950 | 2174231 | - | NZ_CP048630.1 | Ancylobacter pratisalsi |
| 47 | 4078569 | 4078829 | - | NZ_CP040017.1 | Massilia umbonata |
| 48 | 3661303 | 3661584 | + | NC_014217.1 | Starkeya novella DSM 506 |
| 49 | 573759 | 574022 | - | NZ_AP019378.1 | Bordetella parapertussis |
| 50 | 3676881 | 3677144 | + | NZ_LR134326.1 | Bordetella bronchiseptica |
| 51 | 1482751 | 1483014 | - | NC_018518.1 | Bordetella pertussis 18323 |
| 52 | 384928 | 385191 | + | NZ_CP013737.1 | Herbaspirillum rubrisubalbicans M1 |
| 53 | 429692 | 429955 | + | NZ_CP037993.1 | Herbaspirillum huttiense |
| 54 | 3813749 | 3814012 | + | NC_010170.1 | Bordetella petrii |
| 55 | 157540 | 157806 | + | NZ_AP018721.1 | Sulfuritortus calidifontis |
| 56 | 1035811 | 1036074 | + | NZ_CP058952.1 | Chitinibacter fontanus |
| 57 | 4973255 | 4973518 | - | NZ_CP018845.1 | Herbaspirillum robiniae |
| 58 | 1979852 | 1980118 | - | NZ_CP060714.1 | Diaphorobacter ruginosibacter |
| 59 | 2847026 | 2847283 | - | NZ_CP060714.1 | Diaphorobacter ruginosibacter |
| 60 | 106979 | 107233 | - | NZ_CP037867.1 | Hydrogenophaga pseudoflava |
| 61 | 2449228 | 2449500 | - | NZ_CP024942.1 | Paraburkholderia terricola |
| 62 | 3711211 | 3711477 | - | NZ_CP014646.1 | Thauera humireducens |
| 63 | 2463410 | 2463676 | - | NZ_CP043575.1 | Comamonas koreensis |
| 64 | 929772 | 930038 | - | NC_010645.1 | Bordetella avium 197N |
| 65 | 1101521 | 1101784 | - | NZ_CP016171.1 | Bordetella bronchialis |
| 66 | 3086005 | 3086277 | + | NZ_CP028339.1 | Thauera aromatica K172 |
| 67 | 3764830 | 3765102 | - | NZ_CP013119.1 | Alcaligenes faecalis |
| 68 | 1703309 | 1703581 | + | NZ_CP066076.1 | Paraburkholderia ginsengisoli |
| 69 | 2188118 | 2188390 | + | NC_007952.1 | Paraburkholderia xenovorans LB400 |
| 70 | 1567063 | 1567326 | - | NZ_CP038034.1 | Achromobacter insolitus |
| 71 | 1714672 | 1714938 | - | NZ_CP065748.1 | Delftia lacustris |
| 72 | 3446485 | 3446748 | + | NZ_CP053986.1 | Achromobacter denitrificans |
| 73 | 888269 | 888541 | + | NZ_CP022990.1 | Paraburkholderia aromaticivorans |
| 74 | 1868785 | 1869057 | + | NC_010676.1 | Paraburkholderia phytofirmans PsJN |
| 75 | 334250 | 334516 | + | NZ_CP017420.1 | Delftia tsuruhatensis |
| 76 | 4278073 | 4278318 | - | NZ_CP059467.1 | Aromatoleum bremense |
| 77 | 565505 | 565771 | + | NC_007947.1 | Methylobacillus flagellatus KT |
| 78 | 369707 | 369967 | + | NZ_CP036401.1 | Massilia albidiflava |
| 79 | 845379 | 845651 | - | NZ_CP024935.1 | Paraburkholderia graminis |
| 80 | 2711835 | 2712092 | - | NZ_AP018786.1 | Sutterella megalosphaeroides |
| 81 | 963576 | 963839 | + | NZ_LR134302.1 | Achromobacter spanius |
| 82 | 1733721 | 1733993 | - | NZ_CP018839.1 | Thauera chlorobenzoica |
| 83 | 1976395 | 1976655 | - | NZ_CP003915.1 | Advenella mimigardefordensis DPN7 |
| 84 | 437433 | 437699 | + | NZ_CP035900.1 | Burkholderia glumae |
| 85 | 2774039 | 2774299 | - | NZ_CP051298.1 | Alicycliphilus denitrificans |
| 86 | 911836 | 912069 | - | NZ_CP051298.1 | Alicycliphilus denitrificans |
| 87 | 3243308 | 3243565 | - | NC_008752.1 | Acidovorax citrulli AAC00-1 |
| 88 | 15871 | 16137 | + | NZ_CP040709.1 | Inhella inkyongensis |
| 89 | 2813404 | 2813673 | - | NZ_CP041335.1 | Chitinolyticbacter meiyuanensis |
| 90 | 741766 | 742023 | + | NZ_CP051461.1 | Polaromonas vacuolata |
| 91 | 5054665 | 5054934 | + | NZ_CP059560.1 | Aromatoleum petrolei |
| 92 | 3250083 | 3250319 | + | NZ_CP059560.1 | Aromatoleum petrolei |
| 93 | 3294847 | 3295116 | - | NZ_CP020121.1 | Comamonas kerstersii |
| 94 | 2541554 | 2541805 | + | NZ_CP020121.1 | Comamonas kerstersii |
| 95 | 2754593 | 2754850 | + | NZ_CP022987.1 | Pusillimonas thiosulfatoxidans |
| 96 | 1232687 | 1232950 | + | NZ_CP027792.1 | Pulveribacter suum |
| 97 | 2881901 | 2882161 | + | NZ_CP068055.1 | Sutterella wadsworthensis |
| 98 | 2082576 | 2082854 | - | NZ_CP017562.1 | Paraburkholderia sprentiae WSM5005 |
| 99 | 2399661 | 2399927 | + | NZ_HG916765.1 | Castellaniella defragrans 65Phen |
| 100 | 475218 | 475478 | + | NZ_CP021455.1 | Comamonas serinivorans |
| 101 | 4219684 | 4219947 | + | NZ_CP021455.1 | Comamonas serinivorans |
| 102 | 2782910 | 2783170 | - | NZ_LR778301.1 | Denitratisoma oestradiolicum |
| 103 | 603115 | 603381 | - | NC_021294.1 | Caballeronia insecticola |
| 104 | 4816957 | 4817241 | + | NZ_CP016172.1 | Bordetella flabilis |
| 105 | 1406089 | 1406349 | + | NC_014207.1 | Methylotenera versatilis 301 |
| 106 | 2895034 | 2895291 | - | NC_012969.1 | Methylovorus glucosetrophus SIP3-4 |
| 107 | 390532 | 390792 | - | NZ_CP016278.1 | Diaphorobacter polyhydroxybutyrativorans |
| 108 | 2401465 | 2401725 | + | NC_017964.1 | Advenella kashmirensis WT001 |
| 109 | 1668192 | 1668452 | - | NZ_CP040882.1 | Sutterella faecalis |
| 110 | 4687656 | 4687919 | - | NZ_CP019038.1 | Massilia putida |
| 111 | 3239963 | 3240205 | - | NZ_CP019038.1 | Massilia putida |
| 112 | 2628558 | 2628812 | + | NC_015138.1 | Acidovorax avenae subsp. avenae ATCC 19860 |
| 113 | 1191536 | 1191796 | - | NC_015138.1 | Acidovorax avenae subsp. avenae ATCC 19860 |
| 114 | 3377799 | 3378068 | - | NZ_CP041352.1 | Casimicrobium huifangae |
| 115 | 47540 | 47794 | - | NZ_CP017476.1 | Hydrogenophaga crassostreae |
| 116 | 484637 | 484903 | + | NC_015677.1 | Ramlibacter tataouinensis TTB310 |
| 117 | 2929386 | 2929631 | - | NC_015677.1 | Ramlibacter tataouinensis TTB310 |
| 118 | 3729685 | 3729951 | + | NZ_CP060783.1 | Diaphorobacter aerolatus |
| 119 | 1278086 | 1278352 | - | NZ_CP047650.1 | Xylophilus rhododendri |
| 120 | 1237706 | 1237987 | - | NZ_CP031466.1 | Paraburkholderia caffeinilytica |
| 121 | 1428507 | 1428764 | + | NZ_CP013461.1 | Burkholderia stagnalis |
| 122 | 92245 | 92511 | + | NZ_CP013461.1 | Burkholderia stagnalis |
| 123 | 5354125 | 5354382 | - | NZ_CP024645.1 | Rhizobacter gummiphilus |
| 124 | 364126 | 364389 | + | NC_010623.1 | Paraburkholderia phymatum STM815 |
| 125 | 203295 | 203558 | + | NZ_CP035708.1 | Sphaerotilus natans subsp. sulfidivorans |
| 126 | 625681 | 625944 | + | NZ_CP015959.1 | Paraburkholderia caribensis |
| 127 | 1964746 | 1965009 | + | NZ_CP026112.1 | Paraburkholderia terrae |
| 128 | 864547 | 864807 | + | NZ_AP022345.1 | Fluviibacter phosphoraccumulans |
| 129 | 22908 | 23171 | - | NZ_AP018738.1 | Ferriphaselus amnicola |
| 130 | 3979379 | 3979615 | - | NC_006513.1 | Aromatoleum aromaticum EbN1 |
| 131 | 2989947 | 2990204 | - | NZ_CP016210.1 | Azoarcus olearius |
| 132 | 4125245 | 4125517 | - | NZ_CP021112.1 | Pseudorhodoplanes sinuspersici |
| 133 | 2621217 | 2621480 | + | NZ_CP011504.1 | Burkholderia pyrrocinia |
| 134 | 4696441 | 4696707 | - | NZ_CP019236.1 | Rhodoferax koreense |
| 135 | 2886761 | 2887021 | + | NC_013959.1 | Sideroxydans lithotrophicus ES-1 |
| 136 | 1647526 | 1647789 | - | NZ_CP013400.1 | Burkholderia seminalis |
| 137 | 879636 | 879902 | - | NZ_CP046912.1 | Paraburkholderia acidiphila |
| 138 | 1899294 | 1899560 | + | NZ_CP009556.1 | Burkholderia oklahomensis C6786 |
| 139 | 875403 | 875669 | + | NZ_CP046911.1 | Paraburkholderia acidiphila |
| 140 | 1739385 | 1739651 | + | NZ_CP020738.1 | Paraburkholderia acidophila |
| 141 | 243618 | 243884 | + | NZ_CP020738.1 | Paraburkholderia acidophila |
| 142 | 1605023 | 1605286 | - | NZ_CP013403.1 | Burkholderia metallica |
| 143 | 1702066 | 1702329 | - | NZ_CP013452.1 | Burkholderia cenocepacia |
| 144 | 94652 | 94918 | - | NZ_CP029211.1 | Aquabacterium olei |
| 145 | 2762102 | 2762362 | + | NZ_CP047241.1 | Aquitalea denitrificans |
| 146 | 1293675 | 1293938 | - | NZ_CP047241.1 | Aquitalea denitrificans |
| 147 | 1429275 | 1429541 | - | NZ_CP009831.1 | Burkholderia multivorans ATCC BAA-247 |
| 148 | 3058791 | 3059033 | + | NZ_CP022579.1 | Oryzomicrobium terrae |
| 149 | 870398 | 870664 | + | NZ_CP009793.1 | Burkholderia dolosa AU0158 |
| 150 | 1420495 | 1420758 | + | NZ_CP010836.1 | Sphingomonas hengshuiensis |
| 151 | 1468340 | 1468606 | + | NZ_CP013416.1 | Burkholderia ubonensis |
| 152 | 2986322 | 2986579 | - | NZ_CP043046.1 | Pigmentiphaga aceris |
| 153 | 1030546 | 1030809 | - | NZ_CP043473.1 | Chromobacterium paludis |
| 154 | 3512638 | 3512907 | - | NZ_CP029495.1 | Chromobacterium phragmitis |
| 155 | 1641938 | 1642201 | + | NC_007511.1 | Burkholderia lata |
| 156 | 864179 | 864442 | + | NZ_CP045236.1 | Burkholderia cepacia |
| 157 | 2606712 | 2606978 | - | NZ_CP045236.1 | Burkholderia cepacia |
| 158 | 1121329 | 1121595 | + | NZ_CP002581.1 | Burkholderia plantarii |
| 159 | 1524497 | 1524766 | - | NZ_AP019312.1 | Chromobacterium haemolyticum |
| 160 | 4905085 | 4905348 | - | NZ_CP017707.1 | Chromobacterium vaccinii |
| 161 | 2065091 | 2065357 | - | NC_005085.1 | Chromobacterium violaceum ATCC 12472 |
| 162 | 1258686 | 1258952 | + | NZ_CP029641.1 | Paraburkholderia dokdonella |
| 163 | 239146 | 239412 | + | NZ_CP009292.1 | Novosphingobium pentaromativorans US6-1 |
| 164 | 969560 | 969814 | - | NZ_LR699114.1 | Aquicella lusitana |
| 165 | 1539891 | 1540148 | + | NC_008048.1 | Sphingopyxis alaskensis RB2256 |
| 166 | 880114 | 880380 | - | NZ_CP042345.1 | Novosphingobium ginsenosidimutans |
| 167 | 2279591 | 2279839 | - | NZ_CP042345.1 | Novosphingobium ginsenosidimutans |
| 168 | 4006945 | 4007208 | + | NZ_CP039731.1 | Aquitalea aquatilis |
| 169 | 595121 | 595387 | - | NZ_CP012669.1 | Altererythrobacter epoxidivorans |
| 170 | 3357654 | 3357917 | + | NZ_CP011452.2 | Croceibacterium atlanticum |
| 171 | 1525776 | 1526036 | + | NZ_LR699119.1 | Aquicella siphonis |
| 172 | 2824437 | 2824700 | + | NZ_CP022423.1 | Vitreoscilla filiformis |
| 173 | 2326541 | 2326795 | + | NZ_CP009429.1 | Sphingopyxis macrogoltabida |
| 174 | 1429072 | 1429335 | - | NZ_CP009429.1 | Sphingopyxis macrogoltabida |
| 175 | 2014268 | 2014519 | + | NZ_CP045434.1 | Sphingomonas ginsengisoli An et al. 2013 |
| 176 | 95404 | 95655 | + | NZ_CP060718.1 | Sphingomonas lutea |
| 177 | 2655953 | 2656219 | + | NZ_CP022889.1 | Tsuneonella mangrovi |
| 178 | 2712879 | 2713142 | - | NZ_CP060782.1 | Sphingomonas sediminicola |
| 179 | 498309 | 498554 | - | NZ_CP009291.1 | Novosphingobium pentaromativorans US6-1 |
| 180 | 1007239 | 1007487 | + | NZ_CP041659.1 | Sphingomonas xanthus |
| 181 | 474779 | 475024 | - | NZ_CP013816.1 | Piscirickettsia salmonis |
| 182 | 2088287 | 2088553 | + | NZ_CP060717.1 | Sphingomonas rhizophila |
| 183 | 687056 | 687322 | - | NZ_CP015963.1 | Altererythrobacter ishigakiensis |
| 184 | 2329282 | 2329533 | + | NZ_CP011310.1 | Aurantiacibacter atlanticus |
| 185 | 779907 | 780170 | - | NZ_CP049137.1 | Paraburkholderia tropica |
| 186 | 2315246 | 2315509 | + | NC_017310.1 | Desulfovibrio vulgaris RCH1 |
| 187 | 1145508 | 1145765 | - | NZ_CP016545.1 | Paraurantiacibacter namhicola |
| 188 | 3963365 | 3963598 | + | NZ_CP053452.2 | Frigoriglobus tundricola |
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