Result : Q89AA8
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Sulfurtransferase TusE (EC 2.8.1.-) (tRNA 2-thiouridine synthesizing protein E) |
| NCBI Accession ID | AE016826.1 |
| Organism | Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) |
| Left | 482901 |
| Right | 483185 |
| Strand | + |
| Nucleotide Sequence | ATGAACTATATACCCGATTGGAATGAAGAATTAGCAAAAAAGATTGCAAAATCAGAATTTATAAACATGACACCAGATCATTGGGAAATAATATACATTATAAGAAATTTTTATCTAAATTTTAATCTAGCACCTTCTATAAGAATATTAATAAAAACACTAGAAAAAATGAAATATAATAAAAAAAAATGTTCAAGTAGATATTTATTAAAACTATTTCCTAAAAATCCTATTAAACAAGCTAGTAAAATTGCAGGAGTTCCAAAAACTAATGATTGTATATAA |
| Sequence | MNYIPDWNEELAKKIAKSEFINMTPDHWEIIYIIRNFYLNFNLAPSIRILIKTLEKMKYNKKKCSSRYLLKLFPKNPIKQASKIAGVPKTNDCI |
| Source of smORF | Swiss-Prot |
| Function | Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Could accept sulfur from TusD (By similarity). {ECO:0000250}. |
| Pubmed ID | 12522265 |
| Domain | CDD:412740 |
| Functional Category | Others |
| Uniprot ID | Q89AA8 |
| ORF Length (Amino Acid) | 94 |
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| Conservation Analysis |
No. of Species: 80
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 482901 | 483185 | + | NC_004545.1 | Buchnera aphidicola str. Bp (Baizongia pistaciae) |
| 2 | 1623640 | 1623978 | + | NZ_CP029347.1 | Saliniradius amylolyticus |
| 3 | 1857326 | 1857655 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 4 | 1625492 | 1625821 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 5 | 903191 | 903520 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 6 | 2961369 | 2961650 | + | NC_017554.1 | Pantoea ananatis PA13 |
| 7 | 2110522 | 2110851 | + | NZ_CP070624.1 | Photobacterium damselae subsp. damselae |
| 8 | 1660353 | 1660682 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 9 | 1818213 | 1818494 | - | NC_008709.1 | Psychromonas ingrahamii 37 |
| 10 | 769543 | 769824 | - | NZ_CP006944.1 | Mannheimia varigena USDA-ARS-USMARC-1312 |
| 11 | 1191345 | 1191626 | - | NZ_CP061280.1 | Mannheimia bovis |
| 12 | 748617 | 748859 | - | NZ_CP051883.1 | Aeromonas salmonicida |
| 13 | 1669832 | 1670152 | + | NZ_LT906463.1 | Haemophilus pittmaniae |
| 14 | 1614561 | 1614803 | - | NC_015968.1 | Enterobacter soli |
| 15 | 3303994 | 3304260 | + | NZ_CP028897.1 | Dongshaea marina |
| 16 | 2719594 | 2719836 | + | NZ_CP061527.1 | Shigella dysenteriae |
| 17 | 1795323 | 1795565 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 18 | 1669696 | 1669938 | - | NZ_CP009756.1 | Enterobacter cloacae |
| 19 | 1018262 | 1018504 | - | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 20 | 1030339 | 1030581 | - | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 21 | 1159811 | 1160053 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 22 | 3836046 | 3836297 | + | NZ_CP023009.1 | Lonsdalea britannica |
| 23 | 1697162 | 1697404 | - | NZ_LR134340.1 | Escherichia marmotae |
| 24 | 96975 | 97217 | - | NZ_CP057657.1 | Escherichia fergusonii |
| 25 | 551248 | 551490 | - | NZ_CP023529.1 | Lelliottia amnigena |
| 26 | 2540861 | 2541103 | - | NZ_CP014056.2 | Grimontia hollisae |
| 27 | 1184367 | 1184645 | - | NZ_CP014137.1 | Brenneria goodwinii |
| 28 | 1041981 | 1042223 | - | NZ_AP014857.1 | Escherichia albertii |
| 29 | 2934608 | 2934859 | - | NZ_CP026364.1 | Proteus hauseri |
| 30 | 2016624 | 2016863 | + | NZ_CP060401.1 | Xenorhabdus nematophila |
| 31 | 3975143 | 3975382 | + | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 32 | 1914240 | 1914491 | - | NZ_LT906479.1 | Serratia ficaria |
| 33 | 2854551 | 2854793 | + | NZ_CP054058.1 | Scandinavium goeteborgense |
| 34 | 1218347 | 1218649 | - | NZ_CP015425.1 | [Haemophilus] ducreyi |
| 35 | 749826 | 750077 | + | NC_013892.1 | Xenorhabdus bovienii SS-2004 |
| 36 | 1598395 | 1598670 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 37 | 1331614 | 1331865 | - | NZ_CP047349.1 | Proteus terrae subsp. cibarius |
| 38 | 2544932 | 2545174 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 39 | 2671737 | 2672009 | - | NZ_CP041660.1 | Catenovulum sediminis |
| 40 | 696005 | 696247 | + | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 41 | 102333 | 102575 | - | NZ_CP065745.1 | Aeromonas allosaccharophila |
| 42 | 3484438 | 3484680 | + | NC_014500.1 | Dickeya dadantii 3937 |
| 43 | 3420262 | 3420504 | - | NZ_CP042941.1 | Atlantibacter hermannii |
| 44 | 2647223 | 2647465 | + | NZ_CP065534.1 | Lonsdalea populi |
| 45 | 882527 | 882775 | - | NC_010554.1 | Proteus mirabilis HI4320 |
| 46 | 3143522 | 3143761 | + | NC_012880.1 | Musicola paradisiaca Ech703 |
| 47 | 3291316 | 3291567 | + | NZ_CP025799.1 | Dickeya zeae |
| 48 | 1499719 | 1499997 | - | NZ_CP034035.1 | Brenneria rubrifaciens |
| 49 | 4828503 | 4828754 | + | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 50 | 1812899 | 1813141 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 51 | 4187421 | 4187663 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 52 | 3021375 | 3021617 | + | NZ_CP065044.1 | Pectobacterium aroidearum |
| 53 | 1002400 | 1002678 | - | NZ_CP015749.1 | Pectobacterium parmentieri |
| 54 | 1387997 | 1388248 | - | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 55 | 1649381 | 1649632 | - | NZ_FO704550.1 | Xenorhabdus doucetiae |
| 56 | 2715789 | 2716031 | + | NZ_LR134376.1 | Aeromonas encheleia |
| 57 | 2055346 | 2055597 | + | NZ_FO704551.1 | Xenorhabdus poinarii G6 |
| 58 | 1988704 | 1988946 | - | NZ_CP034938.1 | Pectobacterium odoriferum |
| 59 | 2928713 | 2928958 | + | NZ_CP045845.1 | Kluyvera intermedia |
| 60 | 3098069 | 3098308 | + | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 61 | 2890860 | 2891102 | + | NZ_CP038498.1 | Pectobacterium punjabense |
| 62 | 4592425 | 4592664 | - | NZ_CP014136.1 | Gibbsiella quercinecans |
| 63 | 3648684 | 3648935 | - | NZ_CP026047.1 | Raoultella planticola |
| 64 | 3596040 | 3596291 | + | NZ_CP046672.1 | Raoultella ornithinolytica |
| 65 | 1772423 | 1772662 | - | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 66 | 1839580 | 1839822 | + | NZ_AP014635.1 | Vibrio tritonius |
| 67 | 1124529 | 1124762 | - | NZ_CP031961.1 | Pseudoalteromonas tunicata |
| 68 | 1866992 | 1867231 | - | NZ_CP051652.1 | Pectobacterium carotovorum |
| 69 | 1842935 | 1843177 | + | NZ_CP017482.1 | Pectobacterium polaris |
| 70 | 3426086 | 3426337 | + | NZ_CP041247.1 | Raoultella electrica |
| 71 | 1848278 | 1848529 | + | NZ_CP011041.1 | Pseudoalteromonas tetraodonis |
| 72 | 1794801 | 1795052 | + | NZ_CP011030.1 | Pseudoalteromonas issachenkonii |
| 73 | 2787227 | 2787466 | + | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 74 | 4514385 | 4514627 | + | NZ_CP047495.1 | Pectobacterium brasiliense |
| 75 | 1357609 | 1357848 | - | NZ_CP032487.1 | Yersinia hibernica |
| 76 | 3512865 | 3513104 | - | NZ_CP007230.1 | Yersinia similis |
| 77 | 1831231 | 1831470 | - | NZ_AP022188.1 | Aeromonas media |
| 78 | 1656211 | 1656450 | - | NZ_CP040449.1 | Aeromonas simiae |
| 79 | 1593290 | 1593571 | - | NZ_CP009056.1 | Frischella perrara |
| 80 | 1933951 | 1934217 | + | NZ_CP033065.1 | Pseudoalteromonas agarivorans |
| 81 | 1679658 | 1679924 | - | NZ_CP023464.1 | Pseudoalteromonas atlantica |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_017554.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01027.22 | 0.76 | 61 | 195.0 | same-strand | Inhibitor of apoptosis-promoting Bax1 |
| 2 | PF13380.8 | 0.6 | 48 | 1962 | opposite-strand | CoA binding domain |
| 3 | PF08755.13 | 0.68 | 54 | 1617 | same-strand | Hemimethylated DNA-binding protein YccV like |
| 4 | PF00708.20 | 0.75 | 60 | 4 | opposite-strand | Acylphosphatase |
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