Result : Q89A74
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 50S ribosomal protein L29 |
| NCBI Accession ID | AE016826.1 |
| Organism | Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) |
| Left | 524771 |
| Right | 524968 |
| Strand | - |
| Nucleotide Sequence | ATGAAAAAAGTTGAGATAAAAAAAAAAACAATCAAAGAATTAAATATTGAGCTAATGAATTTGTTGCGAGAACAATTTAATCTTACTTTACAACATTCTGCTAAAAAACTTCAGCAGTCGCATTTACTCCAACATGTTCGTCGTAATATTGCTCAAGTTAATACTATATTAGCCGAAAAGGAAAAAGAGTGTGATTGA |
| Sequence | MKKVEIKKKTIKELNIELMNLLREQFNLTLQHSAKKLQQSHLLQHVRRNIAQVNTILAEKEKECD |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl09943. Profile Description: N/A. This family represents the N-terminal region (approximately 8 residues) of the eukaryotic mitochondrial 39-S ribosomal protein L47 (MRP-L47). Mitochondrial ribosomal proteins (MRPs) are the counterparts of the cytoplasmic ribosomal proteins, in that they fulfil similar functions in protein biosynthesis. However, they are distinct in number, features and primary structure. |
| Pubmed ID | 12522265 |
| Domain | CDD:415815 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | Q89A74 |
| ORF Length (Amino Acid) | 65 |
++ More..
| Conservation Analysis |
No. of Species: 307
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 524771 | 524968 | - | NC_004545.1 | Buchnera aphidicola str. Bp (Baizongia pistaciae) |
| 2 | 108042 | 108233 | + | NZ_CP015581.1 | Tatumella citrea |
| 3 | 4255203 | 4255394 | - | NZ_CP050150.1 | Hafnia alvei |
| 4 | 477070 | 477261 | + | NZ_CP042220.2 | Dickeya poaceiphila |
| 5 | 4043447 | 4043638 | - | NZ_LT615367.1 | Dickeya aquatica |
| 6 | 455021 | 455212 | + | NC_012880.1 | Musicola paradisiaca Ech703 |
| 7 | 4187248 | 4187439 | - | NZ_CP025799.1 | Dickeya zeae |
| 8 | 380343 | 380534 | + | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 9 | 4387154 | 4387345 | - | NC_014500.1 | Dickeya dadantii 3937 |
| 10 | 3318774 | 3318965 | + | NZ_CP009460.1 | Dickeya fangzhongdai |
| 11 | 491235 | 491426 | + | NZ_CP017689.1 | Thalassotalea crassostreae |
| 12 | 2620016 | 2620207 | - | NZ_CP009977.1 | Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 |
| 13 | 124994 | 125185 | - | NC_013456.1 | Vibrio antiquarius |
| 14 | 2996135 | 2996326 | - | NZ_CP031781.1 | Vibrio parahaemolyticus |
| 15 | 418005 | 418196 | + | NZ_CP014322.1 | Alteromonas addita |
| 16 | 3728538 | 3728729 | - | NC_015554.1 | Alteromonas naphthalenivorans |
| 17 | 111909 | 112103 | - | NZ_CP072844.1 | Psychrosphaera aestuarii |
| 18 | 5493839 | 5494030 | - | NC_005126.1 | Photorhabdus laumondii subsp. laumondii TTO1 |
| 19 | 1643860 | 1644051 | - | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 20 | 2618803 | 2618994 | + | NZ_CP036200.1 | Shewanella maritima |
| 21 | 226556 | 226747 | + | NZ_CP069213.1 | Shewanella litorisediminis |
| 22 | 256398 | 256589 | + | NC_008700.1 | Shewanella amazonensis SB2B |
| 23 | 4415545 | 4415736 | + | NZ_CP020373.1 | Shewanella khirikhana |
| 24 | 4677727 | 4677918 | - | NZ_CP046378.1 | Shewanella algae |
| 25 | 270171 | 270362 | + | NZ_CP071325.1 | Photobacterium ganghwense |
| 26 | 4013767 | 4013958 | - | NZ_CP037951.1 | Parashewanella tropica |
| 27 | 303270 | 303461 | + | NZ_CP046670.1 | Alteromonas mediterranea |
| 28 | 454278 | 454469 | + | NZ_CP008849.1 | Alteromonas australica |
| 29 | 1604196 | 1604387 | - | NZ_CP015031.1 | Basfia succiniciproducens |
| 30 | 2001829 | 2002020 | - | NC_006300.1 | [Mannheimia] succiniciproducens MBEL55E |
| 31 | 130896 | 131087 | - | NZ_LR134167.1 | Avibacterium volantium |
| 32 | 19304 | 19495 | + | NZ_CP016180.1 | Pasteurella skyensis |
| 33 | 2139388 | 2139579 | + | NZ_CP047495.1 | Pectobacterium brasiliense |
| 34 | 481167 | 481358 | + | NZ_CP051652.1 | Pectobacterium carotovorum |
| 35 | 522216 | 522407 | + | NZ_CP065044.1 | Pectobacterium aroidearum |
| 36 | 4392818 | 4393009 | - | NZ_CP034938.1 | Pectobacterium odoriferum |
| 37 | 3205623 | 3205814 | - | NZ_CP017482.1 | Pectobacterium polaris |
| 38 | 4737436 | 4737627 | + | NZ_CP015749.1 | Pectobacterium parmentieri |
| 39 | 1134004 | 1134195 | - | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 40 | 306492 | 306683 | + | NZ_CP040021.1 | Salinivibrio kushneri |
| 41 | 241847 | 242038 | + | NZ_CP022358.1 | Shewanella bicestrii |
| 42 | 1088540 | 1088731 | + | NZ_CP028926.1 | Pasteurella multocida |
| 43 | 421894 | 422085 | + | NC_016041.1 | Glaciecola nitratireducens FR1064 |
| 44 | 983793 | 983984 | - | NZ_CP048812.1 | Halomonas socia |
| 45 | 87788 | 87979 | + | NZ_CP018804.1 | Histophilus somni |
| 46 | 610734 | 610925 | + | NZ_CP005974.1 | Photobacterium gaetbulicola Gung47 |
| 47 | 4434807 | 4434998 | - | NZ_CP041036.1 | Shewanella polaris |
| 48 | 168231 | 168422 | + | NZ_CP006954.1 | Bibersteinia trehalosi USDA-ARS-USMARC-188 |
| 49 | 172416 | 172607 | + | NZ_CP022272.1 | Shewanella marisflavi |
| 50 | 183724 | 183915 | + | NC_009092.1 | Shewanella loihica PV-4 |
| 51 | 5020391 | 5020582 | - | NC_010334.1 | Shewanella halifaxensis HAW-EB4 |
| 52 | 2095817 | 2096008 | + | NC_011566.1 | Shewanella piezotolerans WP3 |
| 53 | 5280155 | 5280346 | - | NC_009831.1 | Shewanella sediminis HAW-EB3 |
| 54 | 5651808 | 5651999 | - | NC_010506.1 | Shewanella woodyi ATCC 51908 |
| 55 | 214926 | 215117 | + | NC_009901.1 | Shewanella pealeana ATCC 700345 |
| 56 | 1967454 | 1967645 | - | NZ_CP016604.1 | Otariodibacter oris |
| 57 | 616776 | 616967 | + | NZ_LS483443.1 | Aggregatibacter segnis ATCC 33393 |
| 58 | 2056119 | 2056310 | - | NZ_CP006944.1 | Mannheimia varigena USDA-ARS-USMARC-1312 |
| 59 | 334585 | 334776 | - | NZ_CP046531.1 | Mannheimia ovis |
| 60 | 538683 | 538874 | + | NZ_CP061280.1 | Mannheimia bovis |
| 61 | 363087 | 363278 | - | NZ_CP055305.1 | Mannheimia pernigra |
| 62 | 1593665 | 1593856 | + | NC_011852.1 | Glaesserella parasuis SH0165 |
| 63 | 2548405 | 2548596 | - | NC_021883.1 | Mannheimia haemolytica USMARC_2286 |
| 64 | 167294 | 167485 | + | NZ_CP011041.1 | Pseudoalteromonas tetraodonis |
| 65 | 172239 | 172430 | + | NZ_CP011030.1 | Pseudoalteromonas issachenkonii |
| 66 | 180566 | 180757 | + | NZ_CP033065.1 | Pseudoalteromonas agarivorans |
| 67 | 248415 | 248606 | + | NZ_CP032090.1 | Pseudoalteromonas donghaensis |
| 68 | 183524 | 183715 | + | NZ_CP023464.1 | Pseudoalteromonas atlantica |
| 69 | 179328 | 179519 | + | NZ_CP011028.1 | Pseudoalteromonas espejiana DSM 9414 |
| 70 | 2096378 | 2096569 | - | NZ_CP016605.1 | Bisgaardia hudsonensis |
| 71 | 1021521 | 1021712 | + | NZ_LR134510.1 | Actinobacillus delphinicola |
| 72 | 2702241 | 2702432 | - | NZ_CP016414.1 | Vibrio scophthalmi |
| 73 | 4750272 | 4750463 | - | NC_014012.1 | Shewanella violacea DSS12 |
| 74 | 407573 | 407764 | + | NZ_CP014782.1 | Shewanella psychrophila |
| 75 | 587711 | 587902 | + | NZ_CP070624.1 | Photobacterium damselae subsp. damselae |
| 76 | 303456 | 303647 | + | NZ_CP031416.1 | Gallaecimonas mangrovi |
| 77 | 3434365 | 3434556 | + | NZ_CP031961.1 | Pseudoalteromonas tunicata |
| 78 | 2042885 | 2043076 | + | NZ_CP030753.1 | Actinobacillus pleuropneumoniae |
| 79 | 1917916 | 1918107 | - | NZ_CP007715.1 | Actinobacillus equuli subsp. equuli |
| 80 | 1912618 | 1912809 | - | NZ_CP009159.1 | Actinobacillus suis ATCC 33415 |
| 81 | 4402280 | 4402471 | - | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 82 | 3426311 | 3426502 | - | NZ_CP027523.1 | Pseudoalteromonas carrageenovora |
| 83 | 588214 | 588405 | + | NZ_CP015029.1 | Frederiksenia canicola |
| 84 | 2014082 | 2014273 | + | NZ_LT906448.1 | Pasteurella dagmatis |
| 85 | 160761 | 160952 | + | NC_007481.1 | Pseudoalteromonas translucida |
| 86 | 161633 | 161824 | + | NZ_CP011036.1 | Pseudoalteromonas nigrifaciens |
| 87 | 4232379 | 4232570 | - | NZ_CP038498.1 | Pectobacterium punjabense |
| 88 | 200815 | 201006 | + | NC_007954.1 | Shewanella denitrificans OS217 |
| 89 | 3540921 | 3541112 | - | NZ_CP011025.1 | Pseudoalteromonas arctica A 37-1-2 |
| 90 | 2069530 | 2069721 | + | NZ_CP019628.1 | Pseudoalteromonas aliena |
| 91 | 427260 | 427451 | + | NZ_CP034015.1 | Shewanella livingstonensis |
| 92 | 175062 | 175253 | + | NC_008345.1 | Shewanella frigidimarina NCIMB 400 |
| 93 | 4742284 | 4742475 | - | NZ_CP020472.1 | Shewanella japonica |
| 94 | 252589 | 252780 | + | NC_016901.1 | Shewanella baltica OS678 |
| 95 | 2171430 | 2171621 | + | NZ_CP046793.1 | Vibrio metschnikovii |
| 96 | 3419826 | 3420017 | + | NZ_CP041783.1 | Shewanella donghaensis |
| 97 | 132456 | 132647 | + | NZ_CP014226.1 | Halomonas chromatireducens |
| 98 | 457645 | 457836 | - | NZ_CP022355.1 | Paraphotobacterium marinum |
| 99 | 972016 | 972207 | - | NZ_CP014056.2 | Grimontia hollisae |
| 100 | 6025854 | 6026045 | - | NZ_CP007142.1 | Gynuella sunshinyii YC6258 |
| 101 | 1192459 | 1192650 | - | NZ_LR134327.1 | Aggregatibacter aphrophilus ATCC 33389 |
| 102 | 5303612 | 5303803 | - | NZ_CP037952.1 | Parashewanella spongiae |
| 103 | 2674030 | 2674221 | - | NZ_CP017715.1 | Marinobacter salinus |
| 104 | 808703 | 808894 | + | NZ_CP043042.1 | Marinobacter fonticola |
| 105 | 390625 | 390816 | + | NC_017506.1 | Marinobacter adhaerens HP15 |
| 106 | 697720 | 697911 | + | NZ_CP029206.1 | Actinobacillus porcitonsillarum |
| 107 | 410243 | 410434 | - | NZ_LT906463.1 | Haemophilus pittmaniae |
| 108 | 2323492 | 2323683 | + | NZ_CP041660.1 | Catenovulum sediminis |
| 109 | 3789526 | 3789717 | - | NZ_CP020931.1 | Marinobacter salarius |
| 110 | 726455 | 726646 | + | NZ_CP011494.1 | Marinobacter psychrophilus |
| 111 | 2048337 | 2048528 | - | NC_006512.1 | Idiomarina loihiensis L2TR |
| 112 | 620673 | 620864 | + | NZ_CP031093.1 | Hydrocarboniclastica marina |
| 113 | 3639466 | 3639657 | - | NZ_CP021435.1 | Halomonas beimenensis |
| 114 | 2398076 | 2398270 | - | NZ_AP018725.1 | Sulfuriflexus mobilis |
| 115 | 1042233 | 1042424 | + | NZ_CP060009.1 | Pseudomonas sediminis |
| 116 | 1469232 | 1469423 | - | NZ_CP070505.1 | Pseudomonas toyotomiensis |
| 117 | 288938 | 289129 | + | NC_014532.2 | Halomonas elongata DSM 2581 |
| 118 | 626761 | 626952 | + | NZ_AP014862.1 | Pseudomonas furukawaii |
| 119 | 4338467 | 4338658 | - | NC_008709.1 | Psychromonas ingrahamii 37 |
| 120 | 1927419 | 1927610 | - | NZ_LR134516.1 | Neisseria animaloris |
| 121 | 761757 | 761945 | - | NZ_CP021323.1 | Kushneria konosiri |
| 122 | 2537556 | 2537744 | + | NZ_CP021358.1 | Kushneria marisflavi |
| 123 | 3028214 | 3028405 | - | NZ_CP043420.1 | Kushneria phosphatilytica |
| 124 | 715541 | 715732 | + | NZ_AP022642.1 | Pseudomonas otitidis |
| 125 | 255866 | 256057 | + | NC_015276.1 | Marinomonas mediterranea MMB-1 |
| 126 | 519911 | 520102 | - | NZ_CP042382.1 | Pistricoccus aurantiacus |
| 127 | 138839 | 139030 | + | NZ_CP047349.1 | Proteus terrae subsp. cibarius |
| 128 | 3586908 | 3587099 | + | NC_010554.1 | Proteus mirabilis HI4320 |
| 129 | 3486478 | 3486669 | - | NZ_FO704551.1 | Xenorhabdus poinarii G6 |
| 130 | 275720 | 275911 | + | NZ_FO704550.1 | Xenorhabdus doucetiae |
| 131 | 3165816 | 3166007 | - | NZ_CP060401.1 | Xenorhabdus nematophila |
| 132 | 4192449 | 4192640 | - | NZ_CP072455.1 | Xenorhabdus budapestensis |
| 133 | 3161347 | 3161538 | - | NZ_CP016176.1 | Xenorhabdus hominickii |
| 134 | 1708198 | 1708389 | + | NZ_CP026364.1 | Proteus hauseri |
| 135 | 4062580 | 4062771 | - | NC_013892.1 | Xenorhabdus bovienii SS-2004 |
| 136 | 424113 | 424304 | + | NZ_LN907827.1 | Erwinia gerundensis |
| 137 | 2446180 | 2446371 | - | NZ_CP049115.1 | Pantoea stewartii |
| 138 | 459615 | 459806 | + | NC_017554.1 | Pantoea ananatis PA13 |
| 139 | 4586657 | 4586848 | - | NC_014306.1 | Erwinia billingiae Eb661 |
| 140 | 4096903 | 4097094 | - | NZ_CP048796.1 | Providencia vermicola |
| 141 | 974058 | 974249 | + | NZ_CP029736.1 | Providencia rettgeri |
| 142 | 3564663 | 3564854 | - | NZ_CP031123.2 | Providencia huaxiensis |
| 143 | 4872761 | 4872952 | - | NC_012962.1 | Photorhabdus asymbiotica |
| 144 | 1682002 | 1682193 | - | NZ_CP011104.1 | Photorhabdus thracensis |
| 145 | 1386174 | 1386365 | + | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 146 | 3612280 | 3612471 | - | NZ_CP034148.1 | Pantoea agglomerans |
| 147 | 459093 | 459284 | + | NZ_CP045720.1 | Pantoea eucalypti |
| 148 | 469229 | 469420 | + | NZ_CP038853.1 | Pantoea vagans |
| 149 | 3330787 | 3330978 | - | NZ_CP029185.2 | Limnobaculum parvum |
| 150 | 373238 | 373429 | + | NZ_LS483470.1 | Leminorella richardii |
| 151 | 308899 | 309090 | + | NZ_LR134531.1 | Pragia fontium |
| 152 | 2118305 | 2118496 | + | NZ_CP042941.1 | Atlantibacter hermannii |
| 153 | 3951757 | 3951948 | - | NZ_LR134340.1 | Escherichia marmotae |
| 154 | 1441966 | 1442157 | - | NZ_CP053416.1 | Salmonella bongori |
| 155 | 3424575 | 3424766 | - | NZ_AP014857.1 | Escherichia albertii |
| 156 | 4346936 | 4347127 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 157 | 3830478 | 3830669 | + | NZ_CP038469.1 | Citrobacter tructae |
| 158 | 3591835 | 3592026 | - | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 159 | 2832092 | 2832283 | + | NZ_CP044098.1 | Citrobacter portucalensis |
| 160 | 2250590 | 2250781 | - | NZ_CP033744.1 | Citrobacter freundii |
| 161 | 1657375 | 1657566 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
| 162 | 4761695 | 4761886 | + | NC_013716.1 | Citrobacter rodentium ICC168 |
| 163 | 24999 | 25190 | - | NZ_CP045205.1 | Citrobacter telavivensis |
| 164 | 311737 | 311928 | + | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 165 | 1264308 | 1264499 | - | NZ_CP007230.1 | Yersinia similis |
| 166 | 3561515 | 3561706 | + | NZ_CP045300.1 | Kosakonia arachidis |
| 167 | 4893153 | 4893344 | - | NZ_CP048784.1 | Serratia liquefaciens |
| 168 | 4937124 | 4937315 | - | NZ_LR134494.1 | Serratia quinivorans |
| 169 | 5009178 | 5009369 | - | NC_015567.1 | Serratia plymuthica AS9 |
| 170 | 1315241 | 1315432 | - | NZ_CP011254.1 | Serratia fonticola |
| 171 | 1193918 | 1194109 | + | NZ_CP023536.1 | Providencia alcalifaciens |
| 172 | 1185771 | 1185962 | - | NZ_CP019706.1 | Pantoea alhagi |
| 173 | 4102488 | 4102679 | - | NZ_LS483422.1 | Providencia heimbachae |
| 174 | 4273281 | 4273472 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 175 | 4396231 | 4396422 | - | NZ_CP009756.1 | Enterobacter cloacae |
| 176 | 2719273 | 2719464 | - | NZ_CP029347.1 | Saliniradius amylolyticus |
| 177 | 3432951 | 3433142 | - | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 178 | 2014327 | 2014518 | + | NZ_CP023706.1 | Edwardsiella tarda |
| 179 | 287288 | 287479 | + | NZ_CP016043.1 | Edwardsiella hoshinae |
| 180 | 3478365 | 3478556 | - | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 181 | 1416862 | 1417053 | - | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 182 | 3481743 | 3481934 | - | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 183 | 316910 | 317101 | + | NZ_CP023567.1 | Erwinia pyrifoliae |
| 184 | 1115439 | 1115630 | - | NZ_CP065640.1 | Serratia rubidaea |
| 185 | 2369859 | 2370050 | - | NZ_CP057657.1 | Escherichia fergusonii |
| 186 | 3448568 | 3448759 | - | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 187 | 4183708 | 4183899 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 188 | 4143651 | 4143842 | - | NZ_CP034752.1 | Jinshanibacter zhutongyuii |
| 189 | 4806682 | 4806873 | - | NZ_LT906479.1 | Serratia ficaria |
| 190 | 2903104 | 2903295 | + | NZ_CP014136.1 | Gibbsiella quercinecans |
| 191 | 3799569 | 3799760 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 192 | 226826 | 227017 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 193 | 3886917 | 3887108 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 194 | 3964272 | 3964463 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 195 | 80807 | 80998 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 196 | 4054161 | 4054352 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 197 | 408233 | 408424 | + | NZ_CP035129.1 | Kosakonia cowanii |
| 198 | 2693153 | 2693344 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 199 | 4443214 | 4443405 | - | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 200 | 711873 | 712064 | - | NZ_CP040428.1 | Jejubacter calystegiae |
| 201 | 425420 | 425611 | + | NZ_CP041247.1 | Raoultella electrica |
| 202 | 453854 | 454045 | + | NZ_CP014007.2 | Kosakonia oryzae |
| 203 | 1252813 | 1253004 | - | NZ_CP026047.1 | Raoultella planticola |
| 204 | 463759 | 463950 | + | NZ_CP046672.1 | Raoultella ornithinolytica |
| 205 | 4870195 | 4870386 | - | NZ_CP015113.1 | Kosakonia radicincitans |
| 206 | 405477 | 405668 | + | NZ_CP061511.1 | Mixta calida |
| 207 | 480094 | 480285 | + | NZ_CP026377.1 | Mixta gaviniae |
| 208 | 4032625 | 4032816 | + | NZ_CP067057.1 | Rahnella aceris |
| 209 | 2025133 | 2025324 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 210 | 4199294 | 4199485 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 211 | 4292217 | 4292408 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 212 | 240778 | 240969 | + | NZ_LR134201.1 | Cedecea lapagei |
| 213 | 3007416 | 3007607 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 214 | 2854778 | 2854969 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 215 | 4054494 | 4054685 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 216 | 4628334 | 4628525 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 217 | 157075 | 157266 | + | NZ_CP007445.1 | Gilliamella apicola |
| 218 | 483191 | 483382 | + | NZ_CP006569.1 | Sodalis praecaptivus |
| 219 | 2590352 | 2590543 | - | NZ_CP009787.1 | Yersinia rohdei |
| 220 | 3007426 | 3007617 | + | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 221 | 1568019 | 1568210 | + | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 222 | 4364585 | 4364776 | - | NZ_CP043727.1 | Yersinia canariae |
| 223 | 336370 | 336561 | + | NZ_CP011118.1 | Yersinia enterocolitica |
| 224 | 4378691 | 4378882 | - | NZ_CP032487.1 | Yersinia hibernica |
| 225 | 140799 | 140990 | + | NZ_CP046293.1 | Yersinia intermedia |
| 226 | 290670 | 290861 | + | NZ_CP031769.1 | Salinimonas sediminis |
| 227 | 2993671 | 2993862 | - | NZ_CP023529.1 | Lelliottia amnigena |
| 228 | 4306684 | 4306875 | - | NC_015968.1 | Enterobacter soli |
| 229 | 4229059 | 4229250 | + | NZ_CP028271.1 | Mixta intestinalis |
| 230 | 376326 | 376517 | + | NZ_CP061527.1 | Shigella dysenteriae |
| 231 | 2462093 | 2462284 | - | NZ_CP022741.1 | Vibrio qinghaiensis |
| 232 | 3528382 | 3528573 | - | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 233 | 340192 | 340383 | + | NZ_CP071320.1 | Serratia ureilytica |
| 234 | 4070503 | 4070694 | - | NZ_CP016948.1 | Serratia surfactantfaciens |
| 235 | 4842405 | 4842596 | - | NZ_CP038662.1 | Serratia nematodiphila |
| 236 | 395848 | 396039 | + | NZ_AP023184.1 | Buttiauxella agrestis |
| 237 | 461528 | 461719 | + | NZ_CP045845.1 | Kluyvera intermedia |
| 238 | 4176216 | 4176407 | - | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 239 | 428652 | 428843 | + | NZ_LR134475.1 | Klebsiella aerogenes |
| 240 | 236256 | 236447 | + | NZ_CP023525.1 | Cedecea neteri |
| 241 | 424847 | 425038 | + | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 242 | 4866194 | 4866385 | - | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 243 | 434382 | 434573 | + | NZ_CP054254.1 | Klebsiella variicola |
| 244 | 426987 | 427178 | + | NZ_CP050508.1 | Raoultella terrigena |
| 245 | 507533 | 507724 | + | NZ_CP060111.1 | Klebsiella michiganensis |
| 246 | 546682 | 546873 | + | NZ_CP036175.1 | Klebsiella huaxiensis |
| 247 | 347311 | 347502 | + | NZ_CP047475.1 | Vibrio astriarenae |
| 248 | 313484 | 313675 | + | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 249 | 449659 | 449850 | + | NZ_CP013990.1 | Leclercia adecarboxylata |
| 250 | 1182275 | 1182466 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 251 | 981230 | 981421 | + | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 252 | 5142160 | 5142351 | + | NZ_CP011602.1 | Phytobacter ursingii |
| 253 | 2525517 | 2525708 | + | NZ_CP011078.1 | Yersinia ruckeri |
| 254 | 2716930 | 2717121 | - | NZ_AP019651.1 | Vibrio taketomensis |
| 255 | 2853393 | 2853584 | - | NZ_CP032093.1 | Vibrio alfacsensis |
| 256 | 3184255 | 3184446 | + | NZ_AP019657.1 | Vibrio ponticus |
| 257 | 408956 | 409147 | + | NZ_CP044069.1 | Vibrio vulnificus |
| 258 | 280258 | 280449 | + | NZ_CP030788.1 | Vibrio campbellii |
| 259 | 255227 | 255418 | + | NZ_CP009354.1 | Vibrio tubiashii ATCC 19109 |
| 260 | 2822526 | 2822717 | - | NZ_CP018312.1 | Vibrio rotiferianus |
| 261 | 1543835 | 1544026 | - | NZ_CP019959.1 | Vibrio owensii |
| 262 | 487958 | 488149 | + | NZ_CP009467.1 | Vibrio harveyi |
| 263 | 1956313 | 1956504 | - | NZ_CP025792.1 | Vibrio jasicida 090810c |
| 264 | 3112398 | 3112589 | - | NZ_AP014635.1 | Vibrio tritonius |
| 265 | 392178 | 392369 | + | NZ_CP054058.1 | Scandinavium goeteborgense |
| 266 | 2545787 | 2545978 | - | NZ_CP033078.1 | Vibrio zhugei |
| 267 | 121350 | 121541 | - | NZ_CP040990.1 | Vibrio furnissii |
| 268 | 173671 | 173862 | + | NZ_CP009056.1 | Frischella perrara |
| 269 | 152894 | 153085 | + | NZ_CP034035.1 | Brenneria rubrifaciens |
| 270 | 4801001 | 4801192 | + | NZ_CP014137.1 | Brenneria goodwinii |
| 271 | 319176 | 319367 | + | NZ_CP065534.1 | Lonsdalea populi |
| 272 | 747008 | 747199 | - | NZ_CP023009.1 | Lonsdalea britannica |
| 273 | 1787332 | 1787523 | + | NZ_CP065150.1 | Vibrio kanaloae |
| 274 | 2975575 | 2975766 | - | NC_011753.2 | Vibrio atlanticus |
| 275 | 312625 | 312816 | + | NZ_CP039700.1 | Vibrio cyclitrophicus |
| 276 | 1660255 | 1660446 | - | NZ_CP052766.1 | Alteromonas pelagimontana |
| 277 | 2868342 | 2868533 | - | NZ_LS483250.1 | Moritella yayanosii |
| 278 | 4131288 | 4131479 | + | NZ_CP044399.1 | Moritella marina ATCC 15381 |
| 279 | 2278126 | 2278317 | - | NZ_CP035688.1 | Vibrio metoecus |
| 280 | 2620372 | 2620563 | - | NZ_AP014524.1 | Vibrio cholerae MS6 |
| 281 | 3096292 | 3096483 | + | NZ_CP014035.2 | Vibrio fluvialis |
| 282 | 282760 | 282951 | + | NZ_AP018689.1 | Vibrio aphrogenes |
| 283 | 317638 | 317829 | + | NZ_AP018685.1 | Vibrio rumoiensis |
| 284 | 2939668 | 2939859 | - | NZ_LT960611.1 | Vibrio tapetis subsp. tapetis |
| 285 | 1918174 | 1918365 | + | NZ_CP012362.1 | Oblitimonas alkaliphila |
| 286 | 3846215 | 3846406 | - | NZ_CP036536.1 | Salinimonas lutimaris |
| 287 | 404569 | 404760 | + | NZ_CP046268.1 | Vibrio spartinae |
| 288 | 1992056 | 1992247 | - | NZ_CP034759.1 | Litorilituus sediminis |
| 289 | 489225 | 489416 | + | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 290 | 2204980 | 2205171 | + | NZ_CP020465.1 | Cognaticolwellia beringensis |
| 291 | 4424037 | 4424228 | - | NZ_CP031560.1 | Dickeya dianthicola |
| 292 | 209708 | 209899 | + | NZ_AP022843.1 | Halomonas hydrothermalis |
| 293 | 253756 | 253947 | + | NZ_CP011039.1 | Pseudoalteromonas spongiae UST010723-006 |
| 294 | 965433 | 965624 | + | NZ_CP009888.1 | Pseudoalteromonas piratica |
| 295 | 237269 | 237460 | + | NZ_CP028897.1 | Dongshaea marina |
| 296 | 2292500 | 2292700 | - | NZ_CP013816.1 | Piscirickettsia salmonis |
| 297 | 2851611 | 2851802 | - | NZ_CP045350.1 | Vibrio aquimaris |
| 298 | 215277 | 215468 | + | NZ_CP048602.1 | Halomonas piezotolerans |
| 299 | 209169 | 209360 | + | NZ_CP065135.1 | Halomonas venusta |
| 300 | 879094 | 879285 | - | NC_003910.7 | Colwellia psychrerythraea 34H |
| 301 | 3776328 | 3776519 | + | NZ_CP051180.1 | Ferrimonas lipolytica |
| 302 | 313416 | 313607 | + | NC_014541.1 | Ferrimonas balearica DSM 9799 |
| 303 | 372941 | 373132 | + | NZ_CP013106.1 | Halomonas huangheensis |
| 304 | 702038 | 702229 | - | NZ_CP059082.1 | Halomonas titanicae |
| 305 | 3587043 | 3587234 | - | NZ_CP013187.1 | Pseudoalteromonas phenolica |
| 306 | 1512034 | 1512225 | + | NZ_CP072425.1 | Pseudoalteromonas viridis |
| 307 | 368050 | 368241 | + | NC_011312.1 | Aliivibrio salmonicida LFI1238 |
| 308 | 2217767 | 2217958 | + | NZ_CP072133.1 | Pseudoalteromonas xiamenensis |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_004545.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00253.23 | 0.83 | 256 | 1685 | same-strand | Ribosomal protein S14p/S29e |
| 2 | PF00673.23 | 0.88 | 269 | 1132.0 | same-strand | ribosomal L5P family C-terminus |
| 3 | PF00281.21 | 0.88 | 269 | 1132.0 | same-strand | Ribosomal protein L5 |
| 4 | PF17136.6 | 0.88 | 269 | 803.0 | same-strand | Ribosomal proteins 50S L24/mitochondrial 39S L24 |
| 5 | PF00238.21 | 0.88 | 269 | 420.0 | same-strand | Ribosomal protein L14p/L23e |
| 6 | PF00366.22 | 1.0 | 307 | 0.0 | same-strand | Ribosomal protein S17 |
| 7 | PF00252.20 | 1.0 | 306 | 0 | same-strand | Ribosomal protein L16p/L10e |
| 8 | PF00189.22 | 1.0 | 307 | 423.0 | same-strand | Ribosomal protein S3, C-terminal domain |
| 9 | PF07650.19 | 1.0 | 307 | 423.0 | same-strand | KH domain |
| 10 | PF00237.21 | 1.0 | 307 | 1140.0 | same-strand | Ribosomal protein L22p/L17e |
| 11 | PF00203.23 | 0.99 | 303 | 1486.0 | same-strand | Ribosomal protein S19 |
| 12 | PF03947.20 | 0.99 | 305 | 1782.0 | same-strand | Ribosomal Proteins L2, C-terminal domain |
| 13 | PF00181.25 | 0.99 | 305 | 1782.0 | same-strand | Ribosomal Proteins L2, RNA binding domain |
++ More..