Result : Q88A83
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | PqqA binding protein (Coenzyme PQQ synthesis protein D) (Pyrroloquinoline quinone biosynthesis protein D) |
| NCBI Accession ID | AE016853.1 |
| Organism | Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000) |
| Left | 558830 |
| Right | 559126 |
| Strand | - |
| Nucleotide Sequence | ATGAAGCACGAGATAAAACACGATCCGGCTTTTCGAGCACTTACGCCCAAGTGGCACCACGGCTATCGCTTTCAATACGAGCCTGCGCAAAAAGCTCATGTGGTTCTTTACCCGGAAGGCATGATCAAGCTCAATGACAGCGCGAGCCTGATCGGTGGGCTGATTGATGGAGAGCGCACGATCGCCGCTATCATCGCCGAACTGCAAAGGGAATTCCCCAACATCCCCGAGCTTGGAATGGACGTCGACGACTTCATGAAAGTGGCCAAAGAAAAGTACTGGATCGATCTTGTCTGA |
| Sequence | MKHEIKHDPAFRALTPKWHHGYRFQYEPAQKAHVVLYPEGMIKLNDSASLIGGLIDGERTIAAIIAELQREFPNIPELGMDVDDFMKVAKEKYWIDLV |
| Source of smORF | Swiss-Prot |
| Function | Functions as a PqqA binding protein and presents PqqA to PqqE, in the pyrroloquinoline quinone (PQQ) biosynthetic pathway. {ECO:0000255|HAMAP-Rule:MF_00655}. |
| Pubmed ID | 12928499 |
| Domain | CDD:414309 |
| Functional Category | Others |
| Uniprot ID | Q88A83 |
| ORF Length (Amino Acid) | 98 |
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| Conservation Analysis |
No. of Species: 83
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 558830 | 559126 | - | NC_004578.1 | Pseudomonas syringae pv. tomato str. DC3000 |
| 2 | 5525797 | 5526054 | + | NZ_CP042804.1 | Pseudomonas amygdali pv. tabaci str. ATCC 11528 |
| 3 | 390443 | 390700 | - | NZ_CP067022.1 | Pseudomonas cannabina pv. alisalensis |
| 4 | 5461731 | 5461988 | + | NZ_CP068034.2 | Pseudomonas syringae |
| 5 | 6113794 | 6114069 | + | NZ_CP035088.1 | Pseudomonas viciae |
| 6 | 5879140 | 5879415 | + | NZ_CP056030.1 | Pseudomonas eucalypticola |
| 7 | 269698 | 269973 | + | NZ_CP049136.1 | Paraburkholderia tropica |
| 8 | 4799279 | 4799554 | - | NZ_CP048810.1 | Pseudomonas bijieensis |
| 9 | 5740300 | 5740575 | + | NZ_CP029608.1 | Pseudomonas kribbensis |
| 10 | 5947168 | 5947443 | + | NZ_CP062253.1 | Pseudomonas gozinkensis |
| 11 | 5956451 | 5956726 | + | NZ_CP062252.1 | Pseudomonas allokribbensis |
| 12 | 2984753 | 2985028 | - | NZ_CP014205.2 | Pseudomonas glycinae |
| 13 | 5413419 | 5413694 | + | NZ_CP054205.1 | Pseudomonas rhodesiae |
| 14 | 336781 | 337056 | - | NZ_CP012400.2 | Pseudomonas yamanorum |
| 15 | 1125717 | 1125992 | - | NZ_CP035901.1 | Burkholderia glumae |
| 16 | 6308732 | 6309007 | + | NZ_CP051487.1 | Pseudomonas umsongensis |
| 17 | 2381942 | 2382217 | - | NZ_CP051487.1 | Pseudomonas umsongensis |
| 18 | 4964794 | 4965069 | - | NZ_CP012676.1 | Pseudomonas versuta |
| 19 | 5942014 | 5942289 | + | NZ_CP027756.1 | Pseudomonas synxantha |
| 20 | 6162623 | 6162898 | + | NZ_CP034725.1 | Pseudomonas brassicacearum |
| 21 | 5535841 | 5536116 | + | NZ_CP023272.1 | Pseudomonas lurida |
| 22 | 704545 | 704799 | - | NZ_CP070503.1 | Pseudomonas atacamensis |
| 23 | 2972531 | 2972806 | + | NZ_CP014262.1 | Pseudomonas corrugata |
| 24 | 6262313 | 6262588 | + | NZ_LS999205.1 | Pseudomonas protegens CHA0 |
| 25 | 1138421 | 1138696 | - | NZ_CP049044.1 | Pseudomonas psychrophila |
| 26 | 4517577 | 4517852 | - | NZ_CP005960.1 | Pseudomonas mandelii JR-1 |
| 27 | 6220570 | 6220845 | + | NZ_CP061079.1 | Pseudomonas chlororaphis |
| 28 | 4053195 | 4053488 | - | NZ_CP009533.1 | Pseudomonas rhizosphaerae |
| 29 | 3663876 | 3664151 | - | NZ_CP002581.1 | Burkholderia plantarii |
| 30 | 5348132 | 5348407 | + | NZ_CP027723.1 | Pseudomonas orientalis |
| 31 | 6242116 | 6242391 | + | NZ_CP014870.1 | Pseudomonas silesiensis |
| 32 | 533635 | 533910 | - | NZ_CP062158.2 | Pseudomonas lundensis |
| 33 | 5573631 | 5573906 | + | NZ_CP010896.1 | Pseudomonas simiae |
| 34 | 5294708 | 5294983 | + | NZ_CP071706.1 | Pseudomonas donghuensis |
| 35 | 5557283 | 5557537 | - | NZ_CP009365.1 | Pseudomonas soli |
| 36 | 6279460 | 6279735 | + | NZ_CP018420.1 | Pseudomonas veronii |
| 37 | 5280529 | 5280783 | + | NZ_CP024159.1 | Pseudomonas mosselii |
| 38 | 419219 | 419473 | - | NC_008027.1 | Pseudomonas entomophila L48 |
| 39 | 5474867 | 5475142 | + | NZ_CP007039.1 | Pseudomonas cichorii JBC1 |
| 40 | 512245 | 512499 | - | NZ_CP022562.1 | Pseudomonas monteilii |
| 41 | 594632 | 594907 | - | NZ_CP046621.1 | Pseudomonas alkylphenolica |
| 42 | 480966 | 481220 | - | NC_021505.1 | Pseudomonas putida NBRC 14164 |
| 43 | 4078986 | 4079261 | - | NZ_CP031146.1 | Pseudomonas plecoglossicida |
| 44 | 261802 | 262077 | - | NZ_CP017565.1 | Paraburkholderia sprentiae WSM5005 |
| 45 | 2215296 | 2215550 | - | NZ_CP013452.1 | Burkholderia cenocepacia |
| 46 | 1180449 | 1180733 | + | NC_016603.1 | Acinetobacter pittii PHEA-2 |
| 47 | 2123642 | 2123896 | - | NC_014259.1 | Acinetobacter oleivorans DR1 |
| 48 | 2035476 | 2035730 | - | NZ_CP053391.1 | Acinetobacter lactucae |
| 49 | 3911778 | 3912032 | - | NZ_CP070518.1 | Acinetobacter calcoaceticus |
| 50 | 1871761 | 1872015 | - | NZ_CP015121.1 | Acinetobacter baumannii |
| 51 | 1554364 | 1554648 | - | NZ_CP014945.1 | Psychrobacter alimentarius |
| 52 | 134678 | 134932 | - | NZ_CP040105.1 | Acinetobacter nosocomialis M2 |
| 53 | 2122346 | 2122600 | - | NZ_CP065820.1 | Acinetobacter seifertii |
| 54 | 3558157 | 3558402 | - | NZ_LR884459.1 | Psychrobacter arenosus |
| 55 | 676311 | 676595 | - | NZ_CP049916.1 | Acinetobacter lanii |
| 56 | 3040650 | 3040904 | - | NZ_CP030880.1 | Acinetobacter haemolyticus |
| 57 | 1726259 | 1726504 | - | NZ_CP045302.1 | Azotobacter salinestris |
| 58 | 2456815 | 2457099 | - | NZ_CP049801.1 | Acinetobacter shaoyimingii |
| 59 | 3891099 | 3891362 | + | NZ_CP017715.1 | Marinobacter salinus |
| 60 | 850808 | 851071 | + | NZ_CP020931.1 | Marinobacter salarius |
| 61 | 4199558 | 4199803 | - | NC_012560.1 | Azotobacter vinelandii DJ |
| 62 | 4088640 | 4088894 | - | NZ_CP014158.1 | Pseudomonas citronellolis |
| 63 | 2261147 | 2261428 | + | NZ_CP013124.1 | Pseudomonas mendocina S5.2 |
| 64 | 2173692 | 2173940 | + | NC_002516.2 | Pseudomonas aeruginosa PAO1 |
| 65 | 2456906 | 2457187 | + | NZ_CP060009.1 | Pseudomonas sediminis |
| 66 | 1729172 | 1729429 | - | NZ_CP006569.1 | Sodalis praecaptivus |
| 67 | 1813203 | 1813481 | + | NZ_AP022642.1 | Pseudomonas otitidis |
| 68 | 248799 | 249077 | + | NZ_CP061511.1 | Mixta calida |
| 69 | 320635 | 320913 | + | NZ_CP026377.1 | Mixta gaviniae |
| 70 | 1346463 | 1346741 | - | NZ_CP019706.1 | Pantoea alhagi |
| 71 | 2651489 | 2651770 | + | NZ_CP043311.1 | Pseudomonas lalkuanensis |
| 72 | 48338 | 48616 | - | NZ_CP070505.1 | Pseudomonas toyotomiensis |
| 73 | 2831793 | 2832038 | + | NC_018691.1 | Alcanivorax dieselolei B5 |
| 74 | 952989 | 953237 | + | NZ_CP011835.1 | Azotobacter chroococcum |
| 75 | 333663 | 333920 | + | NZ_CP067059.1 | Rahnella aceris |
| 76 | 3368068 | 3368346 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 77 | 4053191 | 4053469 | + | NZ_CP028271.1 | Mixta intestinalis |
| 78 | 3033276 | 3033530 | + | NZ_CP047698.1 | Pseudomonas knackmussii |
| 79 | 4195510 | 4195794 | + | NC_014306.1 | Erwinia billingiae Eb661 |
| 80 | 330591 | 330869 | + | NZ_CP049115.1 | Pantoea stewartii |
| 81 | 2554994 | 2555272 | - | NZ_CP038662.1 | Serratia nematodiphila |
| 82 | 1629721 | 1629984 | - | NZ_CP003915.1 | Advenella mimigardefordensis DPN7 |
| 83 | 4193221 | 4193460 | + | NZ_CP014322.1 | Alteromonas addita |
| 84 | 2441639 | 2441917 | - | NC_017554.1 | Pantoea ananatis PA13 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_004578.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF04055.23 | 0.99 | 82 | -28 | same-strand | Radical SAM superfamily |
| 2 | PF13186.8 | 0.96 | 80 | -28 | same-strand | Iron-sulfur cluster-binding domain |
| 3 | PF03070.18 | 1.0 | 83 | 0.0 | same-strand | TENA/THI-4/PQQC family |
| 4 | PF12706.9 | 1.0 | 83 | 792 | same-strand | Beta-lactamase superfamily domain |
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