Result : Q889P9
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Exodeoxyribonuclease 7 small subunit (EC 3.1.11.6) (Exodeoxyribonuclease VII small subunit) (Exonuclease VII small subunit) |
| NCBI Accession ID | AE016853.1 |
| Organism | Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000) |
| Left | 753503 |
| Right | 753748 |
| Strand | - |
| Nucleotide Sequence | ATGGCCCGCAAGAAAGCTGCACTGGATTTCGAACAGTCTCTCGCTGATCTGCAAGCGCTGGTAGAGCGACTGGAGAATGGTGAGCTGTCGCTGGAAGACTCGTTGACCGCCTTCGAGCAAGGCGTGCGCCTGACGCGTGACTGCCAGAGCGCCCTCACCCAGGCTGAACAAAAGGTTCAAGTGTTGCTGGAACGCGACGGTGAACTGACCGAAGAGCCGTTCGACGACGCGGAACTCCCCGAATGA |
| Sequence | MARKKAALDFEQSLADLQALVERLENGELSLEDSLTAFEQGVRLTRDCQSALTQAEQKVQVLLERDGELTEEPFDDAELPE |
| Source of smORF | Swiss-Prot |
| Function | Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides. {ECO:0000255|HAMAP-Rule:MF_00337}. |
| Pubmed ID | 12928499 |
| Domain | CDD:412547 |
| Functional Category | Others |
| Uniprot ID | Q889P9 |
| ORF Length (Amino Acid) | 81 |
++ More..
| Conservation Analysis |
No. of Species: 201
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 753503 | 753748 | - | NC_004578.1 | Pseudomonas syringae pv. tomato str. DC3000 |
| 2 | 719611 | 719856 | - | NZ_CP068034.2 | Pseudomonas syringae |
| 3 | 627239 | 627484 | - | NZ_CP042804.1 | Pseudomonas amygdali pv. tabaci str. ATCC 11528 |
| 4 | 5117002 | 5117247 | + | NZ_CP067022.1 | Pseudomonas cannabina pv. alisalensis |
| 5 | 5265890 | 5266132 | + | NZ_CP054205.1 | Pseudomonas rhodesiae |
| 6 | 2820877 | 2821119 | + | NZ_CP014262.1 | Pseudomonas corrugata |
| 7 | 5952110 | 5952352 | + | NZ_CP035088.1 | Pseudomonas viciae |
| 8 | 5997848 | 5998090 | + | NZ_CP034725.1 | Pseudomonas brassicacearum |
| 9 | 5426259 | 5426501 | + | NZ_CP010896.1 | Pseudomonas simiae |
| 10 | 5198268 | 5198510 | + | NZ_CP027723.1 | Pseudomonas orientalis |
| 11 | 5377111 | 5377353 | + | NZ_CP023272.1 | Pseudomonas lurida |
| 12 | 5799717 | 5799959 | + | NZ_CP027756.1 | Pseudomonas synxantha |
| 13 | 6141145 | 6141387 | + | NZ_CP018420.1 | Pseudomonas veronii |
| 14 | 6065807 | 6066049 | + | NZ_CP061079.1 | Pseudomonas chlororaphis |
| 15 | 6074716 | 6074958 | + | NZ_CP014870.1 | Pseudomonas silesiensis |
| 16 | 497545 | 497787 | - | NZ_CP012400.2 | Pseudomonas yamanorum |
| 17 | 4962886 | 4963128 | - | NZ_CP048810.1 | Pseudomonas bijieensis |
| 18 | 4211173 | 4211415 | - | NZ_CP009533.1 | Pseudomonas rhizosphaerae |
| 19 | 5125059 | 5125301 | + | NZ_CP071706.1 | Pseudomonas donghuensis |
| 20 | 5272212 | 5272454 | + | NZ_CP007039.1 | Pseudomonas cichorii JBC1 |
| 21 | 5580375 | 5580617 | + | NZ_CP029608.1 | Pseudomonas kribbensis |
| 22 | 5944296 | 5944538 | + | NZ_CP014205.2 | Pseudomonas glycinae |
| 23 | 5782558 | 5782800 | + | NZ_CP062253.1 | Pseudomonas gozinkensis |
| 24 | 5800891 | 5801133 | + | NZ_CP062252.1 | Pseudomonas allokribbensis |
| 25 | 4683818 | 4684060 | - | NZ_CP005960.1 | Pseudomonas mandelii JR-1 |
| 26 | 6085563 | 6085805 | + | NZ_LS999205.1 | Pseudomonas protegens CHA0 |
| 27 | 5096721 | 5096963 | - | NZ_CP012676.1 | Pseudomonas versuta |
| 28 | 865300 | 865542 | - | NZ_CP070503.1 | Pseudomonas atacamensis |
| 29 | 674319 | 674561 | - | NZ_CP062158.2 | Pseudomonas lundensis |
| 30 | 5726483 | 5726725 | + | NZ_CP056030.1 | Pseudomonas eucalypticola |
| 31 | 6154361 | 6154603 | + | NZ_CP051487.1 | Pseudomonas umsongensis |
| 32 | 1282088 | 1282330 | - | NZ_CP049044.1 | Pseudomonas psychrophila |
| 33 | 745273 | 745515 | - | NZ_CP046621.1 | Pseudomonas alkylphenolica |
| 34 | 6227651 | 6227896 | + | NZ_CP048833.1 | Pseudomonas multiresinivorans |
| 35 | 2852927 | 2853169 | + | NZ_CP031146.1 | Pseudomonas plecoglossicida |
| 36 | 823496 | 823738 | - | NZ_LR215729.2 | Pseudomonas marincola |
| 37 | 680625 | 680867 | - | NZ_CP022562.1 | Pseudomonas monteilii |
| 38 | 643296 | 643538 | - | NC_021505.1 | Pseudomonas putida NBRC 14164 |
| 39 | 916624 | 916866 | - | NZ_AP022642.1 | Pseudomonas otitidis |
| 40 | 614837 | 615079 | - | NC_008027.1 | Pseudomonas entomophila L48 |
| 41 | 5715222 | 5715464 | - | NZ_CP009365.1 | Pseudomonas soli |
| 42 | 707804 | 708046 | - | NZ_CP043311.1 | Pseudomonas lalkuanensis |
| 43 | 5124117 | 5124359 | + | NZ_CP024159.1 | Pseudomonas mosselii |
| 44 | 848474 | 848716 | - | NZ_CP047698.1 | Pseudomonas knackmussii |
| 45 | 5912524 | 5912766 | + | NZ_CP014158.1 | Pseudomonas citronellolis |
| 46 | 1092266 | 1092508 | - | NZ_CP060009.1 | Pseudomonas sediminis |
| 47 | 4523369 | 4523611 | + | NZ_CP068551.1 | Pseudomonas khazarica |
| 48 | 722438 | 722680 | - | NZ_AP014862.1 | Pseudomonas furukawaii |
| 49 | 1414908 | 1415150 | + | NZ_CP070505.1 | Pseudomonas toyotomiensis |
| 50 | 3805550 | 3805792 | + | NZ_CP011835.1 | Azotobacter chroococcum |
| 51 | 4525312 | 4525554 | + | NC_002516.2 | Pseudomonas aeruginosa PAO1 |
| 52 | 800490 | 800732 | - | NZ_CP013124.1 | Pseudomonas mendocina S5.2 |
| 53 | 748156 | 748398 | - | NC_012560.1 | Azotobacter vinelandii DJ |
| 54 | 2051769 | 2052011 | - | NC_012560.1 | Azotobacter vinelandii DJ |
| 55 | 3591677 | 3591919 | - | NZ_CP045302.1 | Azotobacter salinestris |
| 56 | 366246 | 366485 | - | NZ_AP014545.1 | Amphritea japonica ATCC BAA-1530 |
| 57 | 1220456 | 1220695 | - | NZ_CP029822.1 | Entomomonas moraniae |
| 58 | 4250334 | 4250567 | + | NZ_CP043929.1 | Methylomonas rhizoryzae |
| 59 | 3424196 | 3424429 | + | NZ_CP035467.1 | Methylotuvimicrobium buryatense |
| 60 | 3829005 | 3829238 | + | NC_015572.1 | Methylomonas methanica MC09 |
| 61 | 420153 | 420392 | - | NZ_CP043869.1 | Neptunomonas concharum |
| 62 | 5305116 | 5305352 | + | NZ_CP048878.1 | Spartinivicinus ruber |
| 63 | 3588824 | 3589057 | + | NC_016112.1 | Methylotuvimicrobium alcaliphilum 20Z |
| 64 | 3598883 | 3599125 | - | NZ_CP022684.1 | Ketobacter alkanivorans |
| 65 | 3351201 | 3351434 | - | NZ_CP014476.1 | Methylomonas denitrificans |
| 66 | 4097506 | 4097742 | + | NC_007912.1 | Saccharophagus degradans 2-40 |
| 67 | 495347 | 495589 | - | NZ_CP015839.1 | Marinobacterium aestuarii |
| 68 | 2168984 | 2169220 | + | NC_018868.3 | Simiduia agarivorans SA1 = DSM 21679 |
| 69 | 1031231 | 1031482 | + | NZ_CP019343.1 | Oceanicoccus sagamiensis |
| 70 | 2843285 | 2843533 | + | NZ_CP060084.1 | Teredinibacter haidensis |
| 71 | 1748560 | 1748790 | + | NZ_AP017928.1 | Methylocaldum marinum |
| 72 | 339837 | 340115 | + | NZ_CP014143.1 | Microbulbifer aggregans |
| 73 | 1294288 | 1294533 | + | NZ_CP012362.1 | Oblitimonas alkaliphila |
| 74 | 3379505 | 3379750 | - | NC_020888.1 | Thalassolituus oleivorans MIL-1 |
| 75 | 2473752 | 2473994 | + | NC_008260.1 | Alcanivorax borkumensis SK2 |
| 76 | 706804 | 707043 | - | NZ_CP020038.1 | Agarilytica rhodophyticola |
| 77 | 2996732 | 2996974 | + | NC_015559.1 | Marinomonas posidonica IVIA-Po-181 |
| 78 | 1119863 | 1120105 | + | NZ_CP070273.1 | Marinomonas foliarum |
| 79 | 5134981 | 5135214 | - | NZ_CP007142.1 | Gynuella sunshinyii YC6258 |
| 80 | 927458 | 927673 | - | NC_018691.1 | Alcanivorax dieselolei B5 |
| 81 | 3010443 | 3010703 | + | NZ_CP014864.1 | Microbulbifer thermotolerans |
| 82 | 1351365 | 1351616 | + | NC_021291.1 | Spiribacter salinus M19-40 |
| 83 | 973516 | 973713 | - | NZ_CP031415.1 | Saccharospirillum mangrovi |
| 84 | 3172625 | 3172849 | + | NZ_CP051183.1 | Bermanella marisrubri |
| 85 | 3048129 | 3048368 | + | NZ_CP011797.1 | Reinekea forsetii |
| 86 | 985098 | 985340 | - | NZ_CP061081.1 | Marinomonas arctica |
| 87 | 3044018 | 3044260 | + | NZ_CP054301.1 | Marinomonas primoryensis |
| 88 | 3489925 | 3490176 | + | NZ_CP004387.1 | Alcanivorax pacificus W11-5 |
| 89 | 960195 | 960434 | - | NZ_CP061941.1 | Marinomonas algicola |
| 90 | 1480613 | 1480864 | + | NC_022664.1 | Spiribacter curvatus |
| 91 | 868144 | 868401 | - | NZ_CP047491.1 | Microbulbifer hydrolyticus |
| 92 | 3752641 | 3752874 | + | NZ_CP014544.1 | Zhongshania aliphaticivorans |
| 93 | 411229 | 411477 | - | NC_002971.4 | Coxiella burnetii RSA 493 |
| 94 | 1129761 | 1130003 | - | NC_015276.1 | Marinomonas mediterranea MMB-1 |
| 95 | 2034765 | 2035040 | - | NZ_CP023465.1 | Lysobacter capsici |
| 96 | 2010158 | 2010406 | + | NZ_AP018724.1 | Sulfurivermis fontis |
| 97 | 3707992 | 3708267 | + | NZ_CP011131.1 | Lysobacter gummosus |
| 98 | 2021683 | 2021931 | - | NZ_CP060092.1 | Teredinibacter purpureus |
| 99 | 3675247 | 3675501 | - | NZ_CP011412.1 | Sedimenticola thiotaurini |
| 100 | 3560038 | 3560292 | + | NZ_CP020931.1 | Marinobacter salarius |
| 101 | 861520 | 861750 | - | NC_002977.6 | Methylococcus capsulatus str. Bath |
| 102 | 2290584 | 2290781 | + | NZ_CP011971.1 | Steroidobacter denitrificans |
| 103 | 2020902 | 2021177 | - | NZ_AP014940.1 | Lysobacter enzymogenes |
| 104 | 745715 | 745912 | - | NZ_CP019650.1 | Microbulbifer agarilyticus |
| 105 | 4678141 | 4678404 | + | NZ_CP043476.1 | Xanthomonas hyacinthi |
| 106 | 1188742 | 1188987 | - | NC_017857.3 | Methylophaga nitratireducenticrescens |
| 107 | 3643162 | 3643437 | + | NZ_CP048602.1 | Halomonas piezotolerans |
| 108 | 604354 | 604608 | - | NC_017506.1 | Marinobacter adhaerens HP15 |
| 109 | 1071273 | 1071530 | - | NC_008340.1 | Alkalilimnicola ehrlichii MLHE-1 |
| 110 | 769393 | 769638 | - | NZ_CP013189.1 | Pseudohongiella spirulinae |
| 111 | 1375174 | 1375446 | - | NZ_CP029843.1 | Lysobacter maris |
| 112 | 894001 | 894243 | - | NC_013851.1 | Allochromatium vinosum DSM 180 |
| 113 | 3992776 | 3993024 | + | NC_010995.1 | Cellvibrio japonicus Ueda107 |
| 114 | 120671 | 120871 | + | NZ_CP065435.1 | Halomonas sp. SS10-MC5 |
| 115 | 2460599 | 2460853 | + | NZ_CP017715.1 | Marinobacter salinus |
| 116 | 2538697 | 2538939 | + | NZ_CP039268.1 | Thermochromatium tepidum ATCC 43061 |
| 117 | 1625911 | 1626114 | + | NZ_CP071517.1 | Lysobacter arenosi |
| 118 | 1049498 | 1049743 | - | NZ_CP043042.1 | Marinobacter fonticola |
| 119 | 1978502 | 1978747 | + | NZ_AP018685.1 | Vibrio rumoiensis |
| 120 | 1322862 | 1323125 | + | NZ_CP029556.1 | Lysobacter oculi |
| 121 | 3266212 | 3266469 | + | NZ_CP064030.1 | Dyella caseinilytica |
| 122 | 1441644 | 1441886 | + | NZ_CP048812.1 | Halomonas socia |
| 123 | 2692871 | 2693092 | - | NZ_CP021377.1 | Oceanisphaera profunda |
| 124 | 2188098 | 2188298 | + | NC_008789.1 | Halorhodospira halophila SL1 |
| 125 | 1255230 | 1255460 | - | NZ_CP041046.1 | Luteibacter pinisoli |
| 126 | 899791 | 900048 | - | NC_011901.1 | Thioalkalivibrio sulfidiphilus HL-EbGr7 |
| 127 | 922503 | 922709 | - | NZ_CP011494.1 | Marinobacter psychrophilus |
| 128 | 1222236 | 1222484 | - | NZ_CP031560.1 | Dickeya dianthicola |
| 129 | 2650848 | 2651117 | + | NZ_CP041242.1 | Lysobacter alkalisoli |
| 130 | 2414330 | 2414572 | + | NZ_CP067057.1 | Rahnella aceris |
| 131 | 1291076 | 1291321 | - | NZ_CP046603.1 | Lysobacter soli |
| 132 | 3514834 | 3515082 | + | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 133 | 1368380 | 1368634 | - | NZ_AP018560.1 | Aerosticca soli |
| 134 | 1299459 | 1299749 | - | NZ_CP059082.1 | Halomonas titanicae |
| 135 | 1183815 | 1184063 | - | NZ_CP025799.1 | Dickeya zeae |
| 136 | 96096 | 96314 | + | NC_014532.2 | Halomonas elongata DSM 2581 |
| 137 | 55445 | 55642 | + | NZ_CP021435.1 | Halomonas beimenensis |
| 138 | 3223293 | 3223535 | + | NZ_LT615367.1 | Dickeya aquatica |
| 139 | 731355 | 731600 | - | NZ_AP018689.1 | Vibrio aphrogenes |
| 140 | 1362969 | 1363226 | - | NZ_CP023559.1 | Salinicola tamaricis |
| 141 | 2656883 | 2657143 | + | NZ_CP012900.1 | Stenotrophomonas acidaminiphila |
| 142 | 1313056 | 1313301 | - | NZ_AP012273.1 | Thiolapillus brandeum |
| 143 | 3041520 | 3041768 | + | NZ_CP042220.2 | Dickeya poaceiphila |
| 144 | 3343081 | 3343335 | + | NZ_CP035704.1 | Pseudolysobacter antarcticus |
| 145 | 3427070 | 3427312 | + | NZ_CP050150.1 | Hafnia alvei |
| 146 | 1238305 | 1238553 | - | NC_014500.1 | Dickeya dadantii 3937 |
| 147 | 1432904 | 1433125 | + | NZ_CP021376.1 | Oceanisphaera avium |
| 148 | 5326620 | 5326868 | + | NZ_CP021425.1 | Oleiphilus messinensis |
| 149 | 3073329 | 3073574 | + | NZ_CP028127.1 | Xanthomonas vasicola pv. vasculorum |
| 150 | 2161777 | 2162007 | - | NC_007517.1 | Geobacter metallireducens GS-15 |
| 151 | 2014080 | 2014337 | + | NZ_CP014841.1 | Dyella thiooxydans |
| 152 | 3660163 | 3660399 | + | NZ_CP034015.1 | Shewanella livingstonensis |
| 153 | 1074335 | 1074565 | + | NZ_CP040676.1 | Exiguobacterium mexicanum |
| 154 | 2226421 | 2226681 | + | NC_016147.2 | Pseudoxanthomonas spadix BD-a59 |
| 155 | 1103915 | 1104148 | - | NZ_CP016605.1 | Bisgaardia hudsonensis |
| 156 | 2867899 | 2868165 | + | NZ_CP046570.1 | Xanthomonas albilineans |
| 157 | 3299562 | 3299822 | + | NZ_CP037883.1 | Stenotrophomonas indicatrix |
| 158 | 1340996 | 1341232 | - | NZ_CP041036.1 | Shewanella polaris |
| 159 | 1412647 | 1412892 | - | NZ_CP007810.1 | Xanthomonas oryzae pv. oryzicola |
| 160 | 3344377 | 3344625 | - | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 161 | 1560431 | 1560679 | + | NZ_CP009460.1 | Dickeya fangzhongdai |
| 162 | 122229 | 122444 | + | NC_007963.1 | Chromohalobacter salexigens DSM 3043 |
| 163 | 1061224 | 1061466 | - | NZ_LN907827.1 | Erwinia gerundensis |
| 164 | 1080206 | 1080460 | - | NZ_CP046293.1 | Yersinia intermedia |
| 165 | 4366993 | 4367238 | + | NC_018012.1 | Thiocystis violascens DSM 198 |
| 166 | 3353722 | 3353958 | + | NC_008345.1 | Shewanella frigidimarina NCIMB 400 |
| 167 | 1556931 | 1557176 | - | NZ_LR134327.1 | Aggregatibacter aphrophilus ATCC 33389 |
| 168 | 3162297 | 3162557 | + | NZ_LS483377.1 | Stenotrophomonas maltophilia |
| 169 | 2252318 | 2252572 | - | NZ_CP015249.1 | Dokdonella koreensis DS-123 |
| 170 | 1778222 | 1778440 | - | NZ_CP030840.1 | Acidisarcina polymorpha |
| 171 | 2330495 | 2330692 | - | NC_010814.1 | Geobacter lovleyi SZ |
| 172 | 1791128 | 1791421 | + | NZ_CP018139.1 | Halomonas aestuarii |
| 173 | 2603554 | 2603781 | - | NC_008609.1 | Pelobacter propionicus DSM 2379 |
| 174 | 4041526 | 4041744 | + | NC_012962.1 | Photorhabdus asymbiotica |
| 175 | 1375389 | 1375628 | - | NZ_LS483458.1 | Haemophilus haemolyticus |
| 176 | 1539700 | 1539939 | + | NZ_LS483429.1 | Haemophilus aegyptius |
| 177 | 2744245 | 2744493 | + | NZ_CP033326.1 | Xanthomonas cucurbitae |
| 178 | 2930905 | 2931147 | - | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 179 | 2019424 | 2019627 | - | NZ_CP053627.1 | Xylella taiwanensis |
| 180 | 4655221 | 4655418 | - | NZ_CP038034.1 | Achromobacter insolitus |
| 181 | 1612856 | 1613086 | + | NZ_CP009788.1 | Geobacter pickeringii |
| 182 | 131531 | 131752 | + | NZ_CP053986.1 | Achromobacter denitrificans |
| 183 | 761315 | 761557 | - | NZ_CP047475.1 | Vibrio astriarenae |
| 184 | 1176954 | 1177217 | - | NZ_LT906479.1 | Serratia ficaria |
| 185 | 871929 | 872144 | - | NZ_CP031093.1 | Hydrocarboniclastica marina |
| 186 | 987048 | 987290 | - | NZ_CP007031.1 | Marichromatium purpuratum 984 |
| 187 | 390925 | 391164 | + | NZ_CP040863.1 | Rodentibacter heylii |
| 188 | 3679573 | 3679830 | + | NZ_CP072455.1 | Xenorhabdus budapestensis |
| 189 | 837766 | 837987 | - | NZ_FO704550.1 | Xenorhabdus doucetiae |
| 190 | 2618701 | 2618928 | - | NZ_CP010802.1 | Desulfuromonas soudanensis |
| 191 | 1195375 | 1195617 | - | NZ_CP061511.1 | Mixta calida |
| 192 | 1554943 | 1555197 | + | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 193 | 3449800 | 3450048 | + | NZ_CP006569.1 | Sodalis praecaptivus |
| 194 | 728633 | 728878 | + | NC_017856.1 | Methylophaga frappieri |
| 195 | 1040920 | 1041183 | - | NZ_CP048784.1 | Serratia liquefaciens |
| 196 | 3984041 | 3984304 | + | NZ_CP071320.1 | Serratia ureilytica |
| 197 | 106508 | 106726 | + | NZ_CP013106.1 | Halomonas huangheensis |
| 198 | 2742306 | 2742506 | - | NZ_AP014924.1 | Limnochorda pilosa |
| 199 | 2971905 | 2972129 | + | NZ_CP012621.1 | Zobellella denitrificans |
| 200 | 2489935 | 2490177 | + | NZ_LS483470.1 | Leminorella richardii |
| 201 | 687551 | 687766 | + | NC_017527.1 | Methanosaeta harundinacea 6Ac |
| 202 | 3123666 | 3123869 | + | NZ_CP036275.1 | Maioricimonas rarisocia |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_004578.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF13292.8 | 0.73 | 146 | 987 | same-strand | 1-deoxy-D-xylulose-5-phosphate synthase |
| 2 | PF02779.26 | 0.74 | 149 | 985 | same-strand | Transketolase, pyrimidine binding domain |
| 3 | PF02780.22 | 0.75 | 150 | 986.0 | same-strand | Transketolase, C-terminal domain |
| 4 | PF00348.19 | 0.97 | 195 | -3.0 | same-strand | Polyprenyl synthetase |
++ More..