Result : Q87XF1
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | FAD assembly factor SdhE |
| NCBI Accession ID | AE016853.1 |
| Organism | Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000) |
| Left | 4760737 |
| Right | 4760991 |
| Strand | - |
| Nucleotide Sequence | ATGGTCGAAGACGTCGAACTCAACCGCCTTTACTGGCACAGCCGCCGTGGCATGCTCGAACTTGACGTGCTGCTGGTGCCGTTTGTCCGTGAGGTCTACCCGCATTTGAATGACGTGGACCGCGATCTGTATCGCCGCCTGCTGACGTGTGAAGATCAGGACATGTTTGGCTGGTTCATGCAGCGCGCCGAGTCCGAGGACGCCGAATTGCAACGCATGGTTCGCATGATTCTGGATCGTGTCCAGCCCAAGTGA |
| Sequence | MVEDVELNRLYWHSRRGMLELDVLLVPFVREVYPHLNDVDRDLYRRLLTCEDQDMFGWFMQRAESEDAELQRMVRMILDRVQPK |
| Source of smORF | Swiss-Prot |
| Function | An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH and other flavinylated proteins as well. {ECO:0000250|UniProtKB:G4V4G2}. |
| Pubmed ID | 12928499 |
| Domain | CDD:412748 |
| Functional Category | Others |
| Uniprot ID | Q87XF1 |
| ORF Length (Amino Acid) | 84 |
++ More..
| Conservation Analysis |
No. of Species: 113
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 4719924 | 4720178 | - | NZ_CP042804.1 | Pseudomonas amygdali pv. tabaci str. ATCC 11528 |
| 2 | 4760737 | 4760991 | - | NC_004578.1 | Pseudomonas syringae pv. tomato str. DC3000 |
| 3 | 4588860 | 4589114 | - | NZ_CP067022.1 | Pseudomonas cannabina pv. alisalensis |
| 4 | 4669939 | 4670193 | - | NZ_CP068034.2 | Pseudomonas syringae |
| 5 | 4746774 | 4747028 | - | NZ_CP007039.1 | Pseudomonas cichorii JBC1 |
| 6 | 4997143 | 4997397 | - | NZ_CP012400.2 | Pseudomonas yamanorum |
| 7 | 1645101 | 1645355 | + | NZ_LS999205.1 | Pseudomonas protegens CHA0 |
| 8 | 1623200 | 1623454 | + | NZ_CP051487.1 | Pseudomonas umsongensis |
| 9 | 1548977 | 1549231 | + | NZ_CP061079.1 | Pseudomonas chlororaphis |
| 10 | 3634713 | 3634967 | - | NZ_CP062158.2 | Pseudomonas lundensis |
| 11 | 2297300 | 2297554 | - | NZ_CP005960.1 | Pseudomonas mandelii JR-1 |
| 12 | 2601388 | 2601642 | - | NZ_CP048810.1 | Pseudomonas bijieensis |
| 13 | 1584384 | 1584638 | + | NZ_CP034725.1 | Pseudomonas brassicacearum |
| 14 | 1003597 | 1003851 | + | NZ_CP009533.1 | Pseudomonas rhizosphaerae |
| 15 | 5156995 | 5157249 | + | NZ_CP014262.1 | Pseudomonas corrugata |
| 16 | 1577190 | 1577444 | + | NZ_CP035088.1 | Pseudomonas viciae |
| 17 | 3327907 | 3328161 | - | NZ_CP012676.1 | Pseudomonas versuta |
| 18 | 4735150 | 4735404 | - | NZ_CP049044.1 | Pseudomonas psychrophila |
| 19 | 5089254 | 5089508 | - | NZ_CP014870.1 | Pseudomonas silesiensis |
| 20 | 5233500 | 5233754 | - | NZ_CP056030.1 | Pseudomonas eucalypticola |
| 21 | 1572780 | 1573034 | + | NZ_CP023272.1 | Pseudomonas lurida |
| 22 | 1575958 | 1576212 | + | NZ_CP010896.1 | Pseudomonas simiae |
| 23 | 1554493 | 1554747 | + | NZ_CP027723.1 | Pseudomonas orientalis |
| 24 | 4565395 | 4565649 | - | NZ_CP070503.1 | Pseudomonas atacamensis |
| 25 | 1649631 | 1649885 | + | NZ_CP018420.1 | Pseudomonas veronii |
| 26 | 1778293 | 1778547 | + | NZ_CP054205.1 | Pseudomonas rhodesiae |
| 27 | 1198059 | 1198313 | + | NZ_CP024159.1 | Pseudomonas mosselii |
| 28 | 115547 | 115801 | + | NZ_CP009365.1 | Pseudomonas soli |
| 29 | 1596059 | 1596313 | + | NZ_CP062253.1 | Pseudomonas gozinkensis |
| 30 | 4432615 | 4432869 | - | NZ_CP014205.2 | Pseudomonas glycinae |
| 31 | 1556930 | 1557184 | + | NZ_CP062252.1 | Pseudomonas allokribbensis |
| 32 | 1624214 | 1624468 | + | NZ_CP029608.1 | Pseudomonas kribbensis |
| 33 | 4702661 | 4702915 | - | NZ_CP022562.1 | Pseudomonas monteilii |
| 34 | 4584884 | 4585138 | - | NC_008027.1 | Pseudomonas entomophila L48 |
| 35 | 4598211 | 4598465 | - | NZ_CP071706.1 | Pseudomonas donghuensis |
| 36 | 1776838 | 1777092 | + | NZ_CP027756.1 | Pseudomonas synxantha |
| 37 | 2367133 | 2367387 | - | NZ_CP031146.1 | Pseudomonas plecoglossicida |
| 38 | 1121267 | 1121521 | + | NC_021505.1 | Pseudomonas putida NBRC 14164 |
| 39 | 1269335 | 1269589 | + | NZ_CP046621.1 | Pseudomonas alkylphenolica |
| 40 | 1630964 | 1631218 | + | NZ_CP068551.1 | Pseudomonas khazarica |
| 41 | 3317709 | 3317963 | - | NZ_LR215729.2 | Pseudomonas marincola |
| 42 | 1699150 | 1699404 | + | NZ_AP022642.1 | Pseudomonas otitidis |
| 43 | 1522733 | 1522987 | + | NZ_CP043311.1 | Pseudomonas lalkuanensis |
| 44 | 3888765 | 3889019 | + | NZ_CP070505.1 | Pseudomonas toyotomiensis |
| 45 | 1456580 | 1456834 | + | NZ_AP014862.1 | Pseudomonas furukawaii |
| 46 | 3638247 | 3638501 | - | NZ_CP060009.1 | Pseudomonas sediminis |
| 47 | 3476056 | 3476310 | - | NZ_CP013124.1 | Pseudomonas mendocina S5.2 |
| 48 | 828617 | 828871 | + | NC_002516.2 | Pseudomonas aeruginosa PAO1 |
| 49 | 1207226 | 1207480 | + | NZ_CP011835.1 | Azotobacter chroococcum |
| 50 | 1472500 | 1472754 | - | NZ_CP045302.1 | Azotobacter salinestris |
| 51 | 1327924 | 1328178 | + | NC_012560.1 | Azotobacter vinelandii DJ |
| 52 | 5440639 | 5440893 | - | NZ_CP014158.1 | Pseudomonas citronellolis |
| 53 | 1404485 | 1404739 | + | NZ_CP047698.1 | Pseudomonas knackmussii |
| 54 | 5708976 | 5709230 | - | NZ_CP048833.1 | Pseudomonas multiresinivorans |
| 55 | 1813394 | 1813654 | - | NC_007645.1 | Hahella chejuensis KCTC 2396 |
| 56 | 542276 | 542545 | - | NZ_CP012362.1 | Oblitimonas alkaliphila |
| 57 | 1825933 | 1826160 | - | NZ_CP029822.1 | Entomomonas moraniae |
| 58 | 4848600 | 4848857 | - | NZ_CP048878.1 | Spartinivicinus ruber |
| 59 | 2260579 | 2260851 | + | NZ_CP017715.1 | Marinobacter salinus |
| 60 | 1193171 | 1193425 | - | NZ_CP043042.1 | Marinobacter fonticola |
| 61 | 1044847 | 1045089 | + | NZ_CP031415.1 | Saccharospirillum mangrovi |
| 62 | 1387270 | 1387497 | - | NZ_CP021425.1 | Oleiphilus messinensis |
| 63 | 3356413 | 3356667 | + | NZ_CP020931.1 | Marinobacter salarius |
| 64 | 2799051 | 2799323 | + | NZ_CP011494.1 | Marinobacter psychrophilus |
| 65 | 783557 | 783829 | - | NC_017506.1 | Marinobacter adhaerens HP15 |
| 66 | 2409561 | 2409827 | - | NZ_CP011797.1 | Reinekea forsetii |
| 67 | 3995445 | 3995699 | - | NZ_CP015839.1 | Marinobacterium aestuarii |
| 68 | 2533016 | 2533270 | + | NZ_CP007142.1 | Gynuella sunshinyii YC6258 |
| 69 | 637590 | 637856 | - | NZ_CP048711.1 | Kineobactrum salinum |
| 70 | 745865 | 746071 | - | NC_018868.3 | Simiduia agarivorans SA1 = DSM 21679 |
| 71 | 3822927 | 3823142 | - | NZ_CP061941.1 | Marinomonas algicola |
| 72 | 2845908 | 2846162 | - | NZ_CP043869.1 | Neptunomonas concharum |
| 73 | 3145630 | 3145890 | - | NZ_AP014545.1 | Amphritea japonica ATCC BAA-1530 |
| 74 | 3045746 | 3045952 | - | NC_015559.1 | Marinomonas posidonica IVIA-Po-181 |
| 75 | 3105565 | 3105771 | - | NZ_CP054301.1 | Marinomonas primoryensis |
| 76 | 2441592 | 2441840 | - | NZ_CP060084.1 | Teredinibacter haidensis |
| 77 | 1023676 | 1023885 | - | NZ_CP031093.1 | Hydrocarboniclastica marina |
| 78 | 1010862 | 1011125 | + | NZ_CP051183.1 | Bermanella marisrubri |
| 79 | 2422367 | 2422645 | - | NC_007963.1 | Chromohalobacter salexigens DSM 3043 |
| 80 | 947048 | 947263 | + | NC_015276.1 | Marinomonas mediterranea MMB-1 |
| 81 | 1179477 | 1179740 | - | NZ_CP070273.1 | Marinomonas foliarum |
| 82 | 2876765 | 2877031 | - | NZ_CP036422.1 | Halioglobus maricola |
| 83 | 930749 | 930964 | + | NZ_CP061081.1 | Marinomonas arctica |
| 84 | 2783897 | 2784148 | - | NZ_CP027523.1 | Pseudoalteromonas carrageenovora |
| 85 | 2693647 | 2693898 | - | NZ_CP033065.1 | Pseudoalteromonas agarivorans |
| 86 | 881415 | 881666 | + | NZ_CP023464.1 | Pseudoalteromonas atlantica |
| 87 | 1512173 | 1512424 | + | NZ_CP009888.1 | Pseudoalteromonas piratica |
| 88 | 2551158 | 2551403 | - | NC_010995.1 | Cellvibrio japonicus Ueda107 |
| 89 | 518644 | 518907 | + | NZ_CP012621.1 | Zobellella denitrificans |
| 90 | 858805 | 859050 | + | NZ_CP072844.1 | Psychrosphaera aestuarii |
| 91 | 2861254 | 2861505 | - | NZ_CP011028.1 | Pseudoalteromonas espejiana DSM 9414 |
| 92 | 875344 | 875613 | - | NC_006512.1 | Idiomarina loihiensis L2TR |
| 93 | 2691964 | 2692215 | + | NZ_CP019628.1 | Pseudoalteromonas aliena |
| 94 | 3560768 | 3561019 | + | NZ_CP052766.1 | Alteromonas pelagimontana |
| 95 | 3529185 | 3529391 | - | NZ_CP014143.1 | Microbulbifer aggregans |
| 96 | 4177638 | 4177865 | - | NZ_CP023559.1 | Salinicola tamaricis |
| 97 | 959378 | 959629 | + | NZ_CP011025.1 | Pseudoalteromonas arctica A 37-1-2 |
| 98 | 2555132 | 2555383 | - | NZ_CP011041.1 | Pseudoalteromonas tetraodonis |
| 99 | 2542159 | 2542410 | - | NZ_CP011030.1 | Pseudoalteromonas issachenkonii |
| 100 | 4347319 | 4347594 | - | NC_003910.7 | Colwellia psychrerythraea 34H |
| 101 | 1289760 | 1290008 | + | NZ_CP022358.1 | Shewanella bicestrii |
| 102 | 2800999 | 2801250 | + | NZ_CP020465.1 | Cognaticolwellia beringensis |
| 103 | 3563164 | 3563451 | + | NZ_CP034759.1 | Litorilituus sediminis |
| 104 | 794593 | 794844 | + | NZ_CP011039.1 | Pseudoalteromonas spongiae UST010723-006 |
| 105 | 2637581 | 2637787 | - | NZ_CP047491.1 | Microbulbifer hydrolyticus |
| 106 | 2266508 | 2266759 | - | NZ_CP013187.1 | Pseudoalteromonas phenolica |
| 107 | 3000513 | 3000725 | - | NZ_CP031416.1 | Gallaecimonas mangrovi |
| 108 | 2301181 | 2301432 | - | NZ_CP031961.1 | Pseudoalteromonas tunicata |
| 109 | 1568826 | 1569053 | + | NZ_CP021435.1 | Halomonas beimenensis |
| 110 | 1009639 | 1009890 | + | NZ_CP017689.1 | Thalassotalea crassostreae |
| 111 | 2962274 | 2962525 | - | NZ_CP031769.1 | Salinimonas sediminis |
| 112 | 2757696 | 2757920 | - | NZ_CP065435.1 | Halomonas sp. SS10-MC5 |
| 113 | 2630305 | 2630523 | - | NZ_CP013106.1 | Halomonas huangheensis |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP042804.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF03888.16 | 0.81 | 91 | 3675 | same-strand | MucB/RseB N-terminal domain |
| 2 | PF17188.6 | 0.82 | 93 | 3670 | same-strand | MucB/RseB C-terminal domain |
| 3 | PF03873.15 | 0.63 | 71 | 3098 | same-strand | Anti sigma-E protein RseA, C-terminal domain |
| 4 | PF04542.16 | 0.87 | 98 | 2403 | same-strand | Sigma-70 region 2 |
| 5 | PF08281.14 | 0.87 | 98 | 2403.0 | same-strand | Sigma-70, region 4 |
| 6 | PF04545.18 | 0.87 | 98 | 2403 | same-strand | Sigma-70, region 4 |
| 7 | PF07638.13 | 0.87 | 98 | 2403.0 | same-strand | ECF sigma factor |
| 8 | PF00890.26 | 0.91 | 103 | 405 | opposite-strand | FAD binding domain |
++ More..