Result : Q87V56
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Malonate decarboxylase acyl carrier protein (Malonate decarboxylase subunit delta) |
| NCBI Accession ID | AE016853.1 |
| Organism | Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000) |
| Left | 5788447 |
| Right | 5788746 |
| Strand | - |
| Nucleotide Sequence | ATGGAAACCCTGTCTTTTGAATTCCCCGCCGGACAGCCGCCCAAAGGCCGTGCGCTGGTGGGCGTGGTCGGTTCCGGTGATCTGGAAGTACTGCTGGAGCCTGGTCAGCCAGGCAAATTGTCGATTCAGGTGGTGACCTCGGTCAACGGTGCCTCGCTGCGCTGGAAACATCTTTTCGAGCGCATGTTCGATGGCCAGACCCCGCCCGCGCTGAGCATCGACATTCATGACTTCGGCGCAACGCCTGGCGTGGTGCGTCTGCGTCTGGAGCAGGGTTTCGAGGAGATCGGCCATGACTGA |
| Sequence | METLSFEFPAGQPPKGRALVGVVGSGDLEVLLEPGQPGKLSIQVVTSVNGASLRWKHLFERMFDGQTPPALSIDIHDFGATPGVVRLRLEQGFEEIGHD |
| Source of smORF | Swiss-Prot |
| Function | Subunit of malonate decarboxylase, it is an acyl carrier protein to which acetyl and malonyl thioester residues are bound via a 2'-(5''-phosphoribosyl)-3'-dephospho-CoA prosthetic group and turn over during the catalytic mechanism. {ECO:0000255|HAMAP-Rule:MF_00710}. |
| Pubmed ID | 12928499 |
| Domain | CDD:414649 |
| Functional Category | Others |
| Uniprot ID | Q87V56 |
| ORF Length (Amino Acid) | 99 |
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| Conservation Analysis |
No. of Species: 103
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 318171 | 318470 | + | NZ_CP067022.1 | Pseudomonas cannabina pv. alisalensis |
| 2 | 5788447 | 5788746 | - | NC_004578.1 | Pseudomonas syringae pv. tomato str. DC3000 |
| 3 | 416264 | 416563 | + | NZ_CP042804.1 | Pseudomonas amygdali pv. tabaci str. ATCC 11528 |
| 4 | 497468 | 497767 | + | NZ_CP068034.2 | Pseudomonas syringae |
| 5 | 5524674 | 5524973 | - | NZ_CP007039.1 | Pseudomonas cichorii JBC1 |
| 6 | 6371681 | 6371980 | - | NZ_CP061079.1 | Pseudomonas chlororaphis |
| 7 | 6418640 | 6418939 | - | NZ_LS999205.1 | Pseudomonas protegens CHA0 |
| 8 | 6265258 | 6265557 | - | NZ_CP035088.1 | Pseudomonas viciae |
| 9 | 6320863 | 6321162 | - | NZ_CP034725.1 | Pseudomonas brassicacearum |
| 10 | 4360127 | 4360426 | + | NZ_CP005960.1 | Pseudomonas mandelii JR-1 |
| 11 | 3128094 | 3128393 | - | NZ_CP014262.1 | Pseudomonas corrugata |
| 12 | 4639551 | 4639850 | + | NZ_CP048810.1 | Pseudomonas bijieensis |
| 13 | 6107021 | 6107320 | - | NZ_CP062252.1 | Pseudomonas allokribbensis |
| 14 | 6453743 | 6454042 | - | NZ_CP051487.1 | Pseudomonas umsongensis |
| 15 | 5891267 | 5891566 | - | NZ_CP029608.1 | Pseudomonas kribbensis |
| 16 | 6427056 | 6427355 | - | NZ_CP018420.1 | Pseudomonas veronii |
| 17 | 6390567 | 6390866 | - | NZ_CP014870.1 | Pseudomonas silesiensis |
| 18 | 6108416 | 6108715 | - | NZ_CP062253.1 | Pseudomonas gozinkensis |
| 19 | 5722619 | 5722918 | - | NZ_CP010896.1 | Pseudomonas simiae |
| 20 | 190080 | 190379 | + | NZ_CP012400.2 | Pseudomonas yamanorum |
| 21 | 558428 | 558727 | + | NZ_CP070503.1 | Pseudomonas atacamensis |
| 22 | 5497087 | 5497386 | - | NZ_CP027723.1 | Pseudomonas orientalis |
| 23 | 5680485 | 5680784 | - | NZ_CP023272.1 | Pseudomonas lurida |
| 24 | 2813756 | 2814055 | + | NZ_CP014205.2 | Pseudomonas glycinae |
| 25 | 5567390 | 5567689 | - | NZ_CP054205.1 | Pseudomonas rhodesiae |
| 26 | 6091270 | 6091569 | - | NZ_CP027756.1 | Pseudomonas synxantha |
| 27 | 6012338 | 6012637 | - | NZ_CP056030.1 | Pseudomonas eucalypticola |
| 28 | 191361 | 191660 | + | NZ_AP014862.1 | Pseudomonas furukawaii |
| 29 | 3647304 | 3647603 | - | NZ_CP011835.1 | Azotobacter chroococcum |
| 30 | 5866952 | 5867251 | - | NZ_AP022642.1 | Pseudomonas otitidis |
| 31 | 96110 | 96409 | - | NZ_CP060009.1 | Pseudomonas sediminis |
| 32 | 4858916 | 4859215 | - | NZ_CP013124.1 | Pseudomonas mendocina S5.2 |
| 33 | 2456779 | 2457078 | + | NZ_CP070505.1 | Pseudomonas toyotomiensis |
| 34 | 202684 | 202983 | + | NZ_CP068551.1 | Pseudomonas khazarica |
| 35 | 3751460 | 3751759 | + | NZ_CP045302.1 | Azotobacter salinestris |
| 36 | 977372 | 977671 | + | NC_012560.1 | Azotobacter vinelandii DJ |
| 37 | 854345 | 854644 | + | NC_016603.1 | Acinetobacter pittii PHEA-2 |
| 38 | 3229926 | 3230225 | - | NZ_CP022562.1 | Pseudomonas monteilii |
| 39 | 751588 | 751887 | - | NZ_CP031146.1 | Pseudomonas plecoglossicida |
| 40 | 2363851 | 2364150 | - | NZ_CP053391.1 | Acinetobacter lactucae |
| 41 | 344455 | 344754 | - | NZ_CP070518.1 | Acinetobacter calcoaceticus |
| 42 | 2224553 | 2224852 | - | NZ_CP015121.1 | Acinetobacter baumannii |
| 43 | 2688324 | 2688623 | + | NC_021505.1 | Pseudomonas putida NBRC 14164 |
| 44 | 2479852 | 2480151 | - | NC_014259.1 | Acinetobacter oleivorans DR1 |
| 45 | 239779 | 240078 | + | NC_002516.2 | Pseudomonas aeruginosa PAO1 |
| 46 | 1165247 | 1165549 | + | NZ_CP041970.1 | Acinetobacter dispersus |
| 47 | 1762168 | 1762467 | + | NC_005966.1 | Acinetobacter baylyi ADP1 |
| 48 | 1184447 | 1184743 | + | NZ_CP016895.1 | Acinetobacter larvae |
| 49 | 1000500 | 1000823 | + | NC_008781.1 | Polaromonas naphthalenivorans CJ2 |
| 50 | 2732361 | 2732669 | - | NZ_CP059560.1 | Aromatoleum petrolei |
| 51 | 6273350 | 6273658 | - | NZ_CP046904.1 | Massilia flava |
| 52 | 3377910 | 3378218 | + | NZ_CP048832.1 | Janthinobacterium lividum |
| 53 | 4249314 | 4249631 | + | NZ_CP043046.1 | Pigmentiphaga aceris |
| 54 | 695279 | 695593 | - | NZ_CP062803.1 | Cupriavidus basilensis |
| 55 | 3015438 | 3015740 | - | NZ_HG322949.1 | Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 |
| 56 | 4456031 | 4456330 | - | NZ_CP023525.1 | Cedecea neteri |
| 57 | 1369698 | 1370000 | + | NZ_CP050150.1 | Hafnia alvei |
| 58 | 2504190 | 2504489 | - | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 59 | 1455252 | 1455551 | - | NZ_CP018787.1 | Oxalobacter formigenes |
| 60 | 666276 | 666575 | - | NZ_CP011254.1 | Serratia fonticola |
| 61 | 246662 | 246961 | - | NZ_CP011258.1 | Ralstonia mannitolilytica |
| 62 | 2417357 | 2417674 | + | NZ_CP011568.3 | Pandoraea thiooxydans |
| 63 | 4160876 | 4161175 | - | NZ_LR134201.1 | Cedecea lapagei |
| 64 | 3969484 | 3969783 | - | NZ_AP023184.1 | Buttiauxella agrestis |
| 65 | 679009 | 679320 | + | NZ_CP019038.1 | Massilia putida |
| 66 | 2854981 | 2855280 | + | NZ_CP054254.1 | Klebsiella variicola |
| 67 | 2713946 | 2714245 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 68 | 583719 | 584018 | - | NZ_CP065640.1 | Serratia rubidaea |
| 69 | 4000281 | 4000580 | + | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 70 | 3907375 | 3907677 | + | NZ_CP067057.1 | Rahnella aceris |
| 71 | 3690152 | 3690451 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 72 | 2718032 | 2718331 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 73 | 490986 | 491294 | + | NZ_CP022990.1 | Paraburkholderia aromaticivorans |
| 74 | 156274 | 156588 | - | NZ_CP022990.1 | Paraburkholderia aromaticivorans |
| 75 | 2689210 | 2689509 | + | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 76 | 4468113 | 4468412 | - | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 77 | 2142000 | 2142299 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 78 | 2627110 | 2627409 | - | NZ_CP050508.1 | Raoultella terrigena |
| 79 | 4331472 | 4331771 | - | NC_015968.1 | Enterobacter soli |
| 80 | 3536411 | 3536710 | + | NZ_CP045300.1 | Kosakonia arachidis |
| 81 | 1954309 | 1954605 | - | NZ_CP047241.1 | Aquitalea denitrificans |
| 82 | 428746 | 429045 | + | NZ_CP014007.2 | Kosakonia oryzae |
| 83 | 4895216 | 4895515 | - | NZ_CP015113.1 | Kosakonia radicincitans |
| 84 | 1801760 | 1802068 | - | NZ_CP024941.1 | Paraburkholderia terricola |
| 85 | 4421013 | 4421312 | - | NZ_CP009756.1 | Enterobacter cloacae |
| 86 | 4317019 | 4317318 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 87 | 2982378 | 2982677 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 88 | 2879509 | 2879808 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 89 | 1460450 | 1460749 | + | NZ_CP016023.1 | Ralstonia insidiosa |
| 90 | 2049957 | 2050256 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 91 | 4653173 | 4653472 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 92 | 4026758 | 4027057 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 93 | 845813 | 846121 | + | NZ_CP041185.1 | Janthinobacterium tructae |
| 94 | 933095 | 933409 | - | NC_010676.1 | Paraburkholderia phytofirmans PsJN |
| 95 | 10923160 | 10923453 | + | NZ_CP012159.1 | Chondromyces crocatus |
| 96 | 342031 | 342333 | - | NZ_CP046910.1 | Paraburkholderia acidiphila |
| 97 | 940106 | 940432 | + | NZ_CP049135.1 | Paraburkholderia tropica |
| 98 | 2188502 | 2188807 | - | NC_010623.1 | Paraburkholderia phymatum STM815 |
| 99 | 1452238 | 1452552 | - | NZ_CP046914.1 | Paraburkholderia acidisoli |
| 100 | 1326564 | 1326878 | - | NC_007952.1 | Paraburkholderia xenovorans LB400 |
| 101 | 1916905 | 1917219 | + | NZ_CP031466.1 | Paraburkholderia caffeinilytica |
| 102 | 2267374 | 2267667 | - | NZ_CP016211.1 | Minicystis rosea |
| 103 | 1769732 | 1770046 | + | NZ_CP024935.1 | Paraburkholderia graminis |
| 104 | 937939 | 938253 | - | NZ_CP066076.1 | Paraburkholderia ginsengisoli |
| 105 | 139418 | 139732 | + | NZ_CP024942.1 | Paraburkholderia terricola |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP067022.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF16957.7 | 0.99 | 102 | 877.0 | same-strand | Malonate decarboxylase, alpha subunit, transporter |
| 2 | PF01874.18 | 1.0 | 103 | 2 | same-strand | ATP:dephospho-CoA triphosphoribosyl transferase |
| 3 | PF06833.13 | 1.0 | 103 | 841 | same-strand | Malonate decarboxylase gamma subunit (MdcE) |
| 4 | PF10620.11 | 0.98 | 101 | 1693 | same-strand | Phosphoribosyl-dephospho-CoA transferase MdcG |
| 5 | PF00698.23 | 0.91 | 94 | 2363.5 | same-strand | Acyl transferase domain |
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