Result : Q87EM1
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Putative membrane protein insertion efficiency factor |
| NCBI Accession ID | AE009442.1 |
| Organism | Xylella fastidiosa (strain Temecula1 / ATCC 700964) |
| Left | 359941 |
| Right | 360219 |
| Strand | - |
| Nucleotide Sequence | GTGCACAAAGTCATCATGCACCCACTCATCCTCTTGCTCAAGATTTACAAGCGCCTTATTAGCCCACTGTTAGGGCCACATTGCCGTTTCGAACCAAGTTGCTCTGAATACGCGATGGTGGCTATTGCCCGCTTCGGCACGCTGCGCGGCATATGGTTAGCAGCACGTCGGCTGGCACGCTGCCATCCGTTGCAACTGGGTGGCCACGACCCGGTACCCGACAACACCAGCACACAGGTCAATCCCCGTTCTCATCGCTGTACAGGACACCACCAATGA |
| Sequence | MHKVIMHPLILLLKIYKRLISPLLGPHCRFEPSCSEYAMVAIARFGTLRGIWLAARRLARCHPLQLGGHDPVPDNTSTQVNPRSHRCTGHHQ |
| Source of smORF | Swiss-Prot |
| Function | Could be involved in insertion of integral membrane proteins into the membrane. {ECO:0000255|HAMAP-Rule:MF_00386}. |
| Pubmed ID | 12533478 |
| Domain | CDD:412414 |
| Functional Category | Others |
| Uniprot ID | Q87EM1 |
| ORF Length (Amino Acid) | 92 |
++ More..
| Conservation Analysis |
No. of Species: 123
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 359941 | 360219 | - | NC_004556.1 | Xylella fastidiosa Temecula1 |
| 2 | 421045 | 421308 | - | NZ_CP053627.1 | Xylella taiwanensis |
| 3 | 2239154 | 2239417 | - | NZ_CP058243.1 | Xanthomonas campestris pv. raphani |
| 4 | 2406778 | 2407062 | + | NZ_CP029843.1 | Lysobacter maris |
| 5 | 1613898 | 1614161 | - | NC_016147.2 | Pseudoxanthomonas spadix BD-a59 |
| 6 | 2443760 | 2444002 | - | NZ_CP033326.1 | Xanthomonas cucurbitae |
| 7 | 2993951 | 2994205 | + | NZ_LS483377.1 | Stenotrophomonas maltophilia |
| 8 | 3106856 | 3107110 | + | NZ_CP037883.1 | Stenotrophomonas indicatrix |
| 9 | 2366017 | 2366247 | - | NZ_CP060731.1 | Pseudoxanthomonas mexicana |
| 10 | 2832253 | 2832522 | + | NZ_CP048044.1 | Xanthomonas citri |
| 11 | 1247449 | 1247724 | + | NZ_CP016878.1 | Xanthomonas hortorum |
| 12 | 2701974 | 2702207 | + | NZ_LT853882.1 | Xanthomonas fragariae |
| 13 | 2058371 | 2058607 | - | NZ_CP023406.1 | Luteimonas chenhongjianii |
| 14 | 1772577 | 1772831 | - | NZ_CP012900.1 | Stenotrophomonas acidaminiphila |
| 15 | 2686098 | 2686346 | + | NZ_CP046603.1 | Lysobacter soli |
| 16 | 2345353 | 2345646 | + | NZ_CP041242.1 | Lysobacter alkalisoli |
| 17 | 3957477 | 3957749 | + | NZ_AP014940.1 | Lysobacter enzymogenes |
| 18 | 3791021 | 3791269 | + | NZ_CP011129.1 | Lysobacter antibioticus |
| 19 | 4569798 | 4570055 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 20 | 4617056 | 4617313 | + | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 21 | 3858315 | 3858572 | - | NZ_CP065534.1 | Lonsdalea populi |
| 22 | 5028552 | 5028782 | - | NC_011891.1 | Anaeromyxobacter dehalogenans 2CP-1 |
| 23 | 1851631 | 1851909 | - | NZ_CP016604.1 | Otariodibacter oris |
| 24 | 4037052 | 4037279 | - | NZ_LR134531.1 | Pragia fontium |
| 25 | 1898100 | 1898354 | - | NC_015499.1 | Thermodesulfobium narugense DSM 14796 |
| 26 | 3796307 | 3796582 | + | NZ_CP023465.1 | Lysobacter capsici |
| 27 | 4595559 | 4595840 | - | NZ_CP049257.1 | Nocardioides anomalus |
| 28 | 4671174 | 4671431 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 29 | 1774060 | 1774314 | - | NZ_CP020921.1 | Thermodesulfobium acidiphilum |
| 30 | 3648463 | 3648708 | - | NZ_CP067057.1 | Rahnella aceris |
| 31 | 3463727 | 3463975 | - | NC_011901.1 | Thioalkalivibrio sulfidiphilus HL-EbGr7 |
| 32 | 3712424 | 3712696 | + | NC_010645.1 | Bordetella avium 197N |
| 33 | 5615139 | 5615369 | - | NZ_CP065748.1 | Delftia lacustris |
| 34 | 4026649 | 4026906 | - | NZ_CP034035.1 | Brenneria rubrifaciens |
| 35 | 4890813 | 4891058 | - | NZ_CP051652.1 | Pectobacterium carotovorum |
| 36 | 4996519 | 4996764 | - | NZ_CP034938.1 | Pectobacterium odoriferum |
| 37 | 4792365 | 4792622 | - | NZ_CP038498.1 | Pectobacterium punjabense |
| 38 | 1631387 | 1631632 | - | NZ_CP047495.1 | Pectobacterium brasiliense |
| 39 | 4890197 | 4890454 | - | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 40 | 4914462 | 4914719 | + | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 41 | 4994484 | 4994741 | - | NZ_CP065044.1 | Pectobacterium aroidearum |
| 42 | 3693583 | 3693828 | + | NZ_CP017482.1 | Pectobacterium polaris |
| 43 | 4058477 | 4058734 | + | NZ_CP015749.1 | Pectobacterium parmentieri |
| 44 | 1664531 | 1664788 | + | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 45 | 4286343 | 4286600 | - | NZ_CP014137.1 | Brenneria goodwinii |
| 46 | 2327206 | 2327460 | + | NC_022600.1 | Gloeobacter kilaueensis JS1 |
| 47 | 153754 | 154026 | - | NC_019776.1 | Cyanobacterium aponinum PCC 10605 |
| 48 | 1145898 | 1146188 | + | NZ_CP018092.1 | Synechococcus lividus PCC 6715 |
| 49 | 2499769 | 2499996 | + | NZ_CP038267.1 | Nocardioides euryhalodurans |
| 50 | 319909 | 320142 | - | NZ_CP038012.1 | Sporosarcina pasteurii |
| 51 | 3008160 | 3008390 | - | NZ_CP025286.1 | Ethanoligenens harbinense YUAN-3 |
| 52 | 3566006 | 3566233 | - | NZ_CP017415.1 | Acidihalobacter yilgarnenesis |
| 53 | 2511324 | 2511581 | + | NZ_CP014136.1 | Gibbsiella quercinecans |
| 54 | 131942 | 132241 | - | NC_009932.1 | Acaryochloris marina MBIC11017 |
| 55 | 1794303 | 1794536 | - | NZ_AP019367.1 | Parolsenella catena |
| 56 | 4488924 | 4489193 | - | NZ_CP016440.1 | Bordetella pseudohinzii |
| 57 | 7213950 | 7214180 | - | NC_007645.1 | Hahella chejuensis KCTC 2396 |
| 58 | 1349919 | 1350158 | + | NC_017790.1 | Deinococcus gobiensis I-0 |
| 59 | 476539 | 476784 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 60 | 1880655 | 1880894 | + | NZ_AP018560.1 | Aerosticca soli |
| 61 | 2852281 | 2852520 | + | NZ_CP042382.1 | Pistricoccus aurantiacus |
| 62 | 1297801 | 1298052 | - | NZ_CP054301.1 | Marinomonas primoryensis |
| 63 | 4606018 | 4606263 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 64 | 1723632 | 1723877 | + | NZ_AP019307.1 | Nocardioides baekrokdamisoli |
| 65 | 859 | 1113 | + | NZ_LT907988.1 | Orrella dioscoreae |
| 66 | 2249638 | 2249883 | - | NZ_CP035900.1 | Burkholderia glumae |
| 67 | 3735761 | 3736015 | - | NZ_CP020737.1 | Paraburkholderia acidophila |
| 68 | 3943373 | 3943621 | - | NZ_CP047349.1 | Proteus terrae subsp. cibarius |
| 69 | 1568150 | 1568398 | - | NZ_CP026364.1 | Proteus hauseri |
| 70 | 3933738 | 3933992 | - | NZ_CP013414.1 | Burkholderia ubonensis |
| 71 | 4564699 | 4564983 | - | NZ_CP062803.1 | Cupriavidus basilensis |
| 72 | 54090 | 54350 | + | NZ_CP021358.1 | Kushneria marisflavi |
| 73 | 3444353 | 3444601 | - | NC_010554.1 | Proteus mirabilis HI4320 |
| 74 | 4974804 | 4975058 | - | NZ_CP020472.1 | Shewanella japonica |
| 75 | 1272131 | 1272385 | - | NZ_CP011503.1 | Burkholderia pyrrocinia |
| 76 | 1925828 | 1926064 | - | NC_022664.1 | Spiribacter curvatus |
| 77 | 6088130 | 6088375 | - | NZ_AP022642.1 | Pseudomonas otitidis |
| 78 | 4075904 | 4076152 | - | NC_013861.1 | Legionella longbeachae NSW150 |
| 79 | 3432655 | 3432882 | - | NZ_CP046904.1 | Massilia flava |
| 80 | 3187454 | 3187708 | - | NZ_CP041783.1 | Shewanella donghaensis |
| 81 | 149456 | 149701 | - | NZ_CP071706.1 | Pseudomonas donghuensis |
| 82 | 3308151 | 3308405 | + | NZ_CP009795.1 | Burkholderia dolosa AU0158 |
| 83 | 4057836 | 4058066 | - | NZ_CP024941.1 | Paraburkholderia terricola |
| 84 | 2070161 | 2070433 | + | NZ_CP014226.1 | Halomonas chromatireducens |
| 85 | 5740896 | 5741141 | - | NZ_CP024159.1 | Pseudomonas mosselii |
| 86 | 5887962 | 5888207 | - | NC_008027.1 | Pseudomonas entomophila L48 |
| 87 | 4987574 | 4987819 | - | NZ_CP009365.1 | Pseudomonas soli |
| 88 | 292143 | 292391 | + | NZ_HG322949.1 | Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 |
| 89 | 6372224 | 6372484 | - | NZ_CP048832.1 | Janthinobacterium lividum |
| 90 | 3895217 | 3895477 | - | NZ_CP041185.1 | Janthinobacterium tructae |
| 91 | 3702177 | 3702422 | - | NZ_CP013459.1 | Burkholderia stagnalis |
| 92 | 3555238 | 3555492 | - | NZ_CP013401.1 | Burkholderia metallica |
| 93 | 3587474 | 3587728 | - | NZ_CP013450.1 | Burkholderia cenocepacia |
| 94 | 3503843 | 3504088 | - | NZ_CP013398.1 | Burkholderia seminalis |
| 95 | 3686695 | 3686949 | - | NZ_CP045235.1 | Burkholderia cepacia |
| 96 | 3692828 | 3693082 | - | NC_007510.1 | Burkholderia lata |
| 97 | 6273005 | 6273265 | - | NZ_CP023422.1 | Janthinobacterium svalbardensis |
| 98 | 5225827 | 5226081 | - | NC_010334.1 | Shewanella halifaxensis HAW-EB4 |
| 99 | 2832566 | 2832793 | + | NZ_CP017561.1 | Paraburkholderia sprentiae WSM5005 |
| 100 | 3652247 | 3652492 | + | NZ_CP031146.1 | Pseudomonas plecoglossicida |
| 101 | 2324864 | 2325100 | + | NC_013960.1 | Nitrosococcus halophilus Nc 4 |
| 102 | 4522631 | 4522894 | - | NZ_CP040017.1 | Massilia umbonata |
| 103 | 6155699 | 6155944 | - | NC_021505.1 | Pseudomonas putida NBRC 14164 |
| 104 | 6762298 | 6762543 | - | NZ_CP014870.1 | Pseudomonas silesiensis |
| 105 | 1454341 | 1454628 | - | NZ_AP018933.1 | Zymobacter palmae |
| 106 | 2572861 | 2573109 | - | NZ_AP014568.1 | Serpentinomonas raichei |
| 107 | 1853557 | 1853787 | - | NC_019729.1 | Oscillatoria nigro-viridis PCC 7112 |
| 108 | 5965712 | 5965972 | - | NZ_CP016171.1 | Bordetella bronchialis |
| 109 | 130421 | 130666 | - | NZ_CP051487.1 | Pseudomonas umsongensis |
| 110 | 391866 | 392117 | - | NZ_CP013341.1 | Nitrosomonas ureae |
| 111 | 6017212 | 6017457 | - | NZ_CP068034.2 | Pseudomonas syringae |
| 112 | 6052558 | 6052803 | - | NZ_CP042804.1 | Pseudomonas amygdali pv. tabaci str. ATCC 11528 |
| 113 | 132574 | 132828 | - | NZ_CP009832.1 | Burkholderia multivorans ATCC BAA-247 |
| 114 | 3069519 | 3069788 | - | NZ_LT985188.1 | Micropruina glycogenica |
| 115 | 4401148 | 4401426 | - | NC_008781.1 | Polaromonas naphthalenivorans CJ2 |
| 116 | 6007532 | 6007777 | - | NZ_CP067022.1 | Pseudomonas cannabina pv. alisalensis |
| 117 | 6396091 | 6396336 | - | NC_004578.1 | Pseudomonas syringae pv. tomato str. DC3000 |
| 118 | 120793 | 121038 | + | NZ_CP070503.1 | Pseudomonas atacamensis |
| 119 | 9873522 | 9873761 | - | NZ_CP007155.1 | Kutzneria albida DSM 43870 |
| 120 | 5934615 | 5934872 | - | NC_010506.1 | Shewanella woodyi ATCC 51908 |
| 121 | 2132179 | 2132412 | - | NZ_LR699114.1 | Aquicella lusitana |
| 122 | 1667410 | 1667667 | - | NC_008025.1 | Deinococcus geothermalis DSM 11300 |
| 123 | 3635 | 3892 | - | NC_009831.1 | Shewanella sediminis HAW-EB3 |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP054058.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF12631.9 | 0.6 | 74 | 1772.5 | same-strand | MnmE helical domain |
| 2 | PF10396.11 | 0.6 | 74 | 1772.5 | same-strand | GTP-binding protein TrmE N-terminus |
| 3 | PF14849.8 | 0.63 | 77 | 3 | same-strand | YidC periplasmic domain |
| 4 | PF02096.22 | 0.72 | 88 | 3.0 | same-strand | 60Kd inner membrane protein |
++ More..