Result : Q87E80
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 50S ribosomal protein L23 |
| NCBI Accession ID | AE009442.1 |
| Organism | Xylella fastidiosa (strain Temecula1 / ATCC 700964) |
| Left | 538248 |
| Right | 538550 |
| Strand | + |
| Nucleotide Sequence | ATGAACAGTAGTTGTGAAAAAATATTCGGCGTACTGCGTTCTCCTCGGGTTTCAGAAAAGAGCTCTCGTCTTCAAGAGATTTCTAATGTCTATGTTTTTGAGGTGTCTAGTGATGCTACTAAGATTGATGTGAAAAATGCAGTTGAGCGTCTTTTCGATGTAAAGGTCGGTGTAGTTAGGGTTTTGAATGTAAAAGGTAAAAGTAAATCCTTTCGCAATCGTGGTGGCTCTCGTTCTGGATGGCGTAAAGCTTATGTTCGCTTAATTGATGGGCAATCCATTGATGTTGCTTCTAGCGTTTGA |
| Sequence | MNSSCEKIFGVLRSPRVSEKSSRLQEISNVYVFEVSSDATKIDVKNAVERLFDVKVGVVRVLNVKGKSKSFRNRGGSRSGWRKAYVRLIDGQSIDVASSV |
| Source of smORF | Swiss-Prot |
| Function | One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome. {ECO:0000255|HAMAP-Rule:MF_01369}. |
| Pubmed ID | 12533478 |
| Domain | CDD:412311 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | Q87E80 |
| ORF Length (Amino Acid) | 100 |
++ More..
| Conservation Analysis |
No. of Species: 304
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 538248 | 538550 | + | NC_004556.1 | Xylella fastidiosa Temecula1 |
| 2 | 686149 | 686451 | + | NZ_CP053627.1 | Xylella taiwanensis |
| 3 | 976419 | 976691 | + | NZ_CP012900.1 | Stenotrophomonas acidaminiphila |
| 4 | 873897 | 874196 | + | NZ_LS483377.1 | Stenotrophomonas maltophilia |
| 5 | 1856090 | 1856362 | + | NZ_CP060731.1 | Pseudoxanthomonas mexicana |
| 6 | 2582683 | 2582985 | - | NC_016147.2 | Pseudoxanthomonas spadix BD-a59 |
| 7 | 921503 | 921802 | + | NZ_CP037883.1 | Stenotrophomonas indicatrix |
| 8 | 518173 | 518445 | + | NZ_CP046570.1 | Xanthomonas albilineans |
| 9 | 823509 | 823781 | - | NZ_CP043476.1 | Xanthomonas hyacinthi |
| 10 | 4107094 | 4107366 | + | NZ_CP018725.1 | Xanthomonas vesicatoria ATCC 35937 |
| 11 | 3777292 | 3777564 | - | NZ_CP058243.1 | Xanthomonas campestris pv. raphani |
| 12 | 1150801 | 1151073 | + | NZ_CP028127.1 | Xanthomonas vasicola pv. vasculorum |
| 13 | 2871838 | 2872134 | - | NZ_CP029843.1 | Lysobacter maris |
| 14 | 2413869 | 2414141 | - | NZ_CP016878.1 | Xanthomonas hortorum |
| 15 | 3136852 | 3137124 | - | NZ_LT853882.1 | Xanthomonas fragariae |
| 16 | 1147138 | 1147410 | + | NZ_CP048044.1 | Xanthomonas citri |
| 17 | 895219 | 895491 | + | NZ_CP033326.1 | Xanthomonas cucurbitae |
| 18 | 1180285 | 1180557 | + | NZ_CP072268.1 | Xanthomonas euvesicatoria pv. alfalfae |
| 19 | 2688797 | 2689093 | - | NZ_CP041242.1 | Lysobacter alkalisoli |
| 20 | 895805 | 896077 | + | NZ_CP007810.1 | Xanthomonas oryzae pv. oryzicola |
| 21 | 1080780 | 1081076 | + | NZ_CP046603.1 | Lysobacter soli |
| 22 | 1559246 | 1559542 | + | NZ_AP014940.1 | Lysobacter enzymogenes |
| 23 | 1880154 | 1880450 | - | NZ_CP071517.1 | Lysobacter arenosi |
| 24 | 4215519 | 4215773 | - | NZ_CP011131.1 | Lysobacter gummosus |
| 25 | 4497529 | 4497825 | - | NZ_CP011129.1 | Lysobacter antibioticus |
| 26 | 2327760 | 2328017 | + | NZ_CP042218.1 | Luteimonas granuli |
| 27 | 2266531 | 2266827 | + | NZ_CP060820.1 | Lysobacter solisilvae (ex Woo and Kim 2020) |
| 28 | 4422193 | 4422447 | - | NZ_CP023465.1 | Lysobacter capsici |
| 29 | 2620023 | 2620280 | + | NZ_CP060711.1 | Thermomonas brevis |
| 30 | 1361302 | 1361559 | + | NZ_CP023406.1 | Luteimonas chenhongjianii |
| 31 | 3007494 | 3007772 | - | NZ_CP015249.1 | Dokdonella koreensis DS-123 |
| 32 | 3302171 | 3302464 | - | NZ_CP064030.1 | Dyella caseinilytica |
| 33 | 2145732 | 2145998 | - | NZ_AP018560.1 | Aerosticca soli |
| 34 | 4177537 | 4177809 | - | NZ_CP027860.1 | Ahniella affigens |
| 35 | 1089977 | 1090270 | + | NC_020541.1 | Rhodanobacter denitrificans |
| 36 | 2684685 | 2684978 | + | NZ_CP017480.1 | Luteibacter rhizovicinus DSM 16549 |
| 37 | 3505543 | 3505818 | - | NZ_CP035704.1 | Pseudolysobacter antarcticus |
| 38 | 734497 | 734790 | + | NC_017033.1 | Frateuria aurantia DSM 6220 |
| 39 | 2739529 | 2739795 | - | NZ_CP072793.1 | Thiothrix unzii |
| 40 | 2049517 | 2049810 | - | NZ_CP014841.1 | Dyella thiooxydans |
| 41 | 360716 | 361012 | + | NZ_AP018722.1 | Thiomicrorhabdus aquaedulcis |
| 42 | 333458 | 333712 | + | NZ_CP029556.1 | Lysobacter oculi |
| 43 | 2707088 | 2707357 | - | NZ_CP012154.1 | Wenzhouxiangella marina |
| 44 | 124627 | 124869 | + | NC_012691.1 | Tolumonas auensis DSM 9187 |
| 45 | 446846 | 447112 | + | NZ_CP035033.1 | Hydrogenovibrio thermophilus |
| 46 | 2039599 | 2039901 | + | NZ_CP021377.1 | Oceanisphaera profunda |
| 47 | 2470553 | 2470855 | + | NZ_CP021376.1 | Oceanisphaera avium |
| 48 | 455264 | 455533 | + | NZ_CP033040.1 | Thiomicrorhabdus indica |
| 49 | 363520 | 363789 | + | NZ_CP040602.1 | Thiomicrorhabdus sediminis |
| 50 | 133444 | 133698 | + | NC_015581.1 | Thiomicrospira cyclica ALM1 |
| 51 | 5175520 | 5175792 | - | NZ_CP020038.1 | Agarilytica rhodophyticola |
| 52 | 547315 | 547611 | + | NZ_CP043929.1 | Methylomonas rhizoryzae |
| 53 | 168946 | 169200 | + | NZ_CP007030.1 | Thiomicrospira aerophila AL3 |
| 54 | 450114 | 450410 | + | NC_008260.1 | Alcanivorax borkumensis SK2 |
| 55 | 836853 | 837149 | + | NC_010995.1 | Cellvibrio japonicus Ueda107 |
| 56 | 617029 | 617331 | + | NZ_CP004387.1 | Alcanivorax pacificus W11-5 |
| 57 | 300546 | 300845 | + | NZ_CP031416.1 | Gallaecimonas mangrovi |
| 58 | 4573295 | 4573591 | + | NC_018012.1 | Thiocystis violascens DSM 198 |
| 59 | 2210082 | 2210348 | + | NZ_CP058952.1 | Chitinibacter fontanus |
| 60 | 815430 | 815699 | + | NZ_CP007031.1 | Marichromatium purpuratum 984 |
| 61 | 2400297 | 2400566 | - | NZ_AP021889.1 | Thiosulfatimonas sediminis |
| 62 | 749824 | 750126 | - | NZ_CP023009.1 | Lonsdalea britannica |
| 63 | 1085631 | 1085906 | + | NZ_CP028926.1 | Pasteurella multocida |
| 64 | 2011173 | 2011448 | + | NZ_LT906448.1 | Pasteurella dagmatis |
| 65 | 1195284 | 1195562 | - | NZ_LR134327.1 | Aggregatibacter aphrophilus ATCC 33389 |
| 66 | 4200994 | 4201266 | - | NC_018691.1 | Alcanivorax dieselolei B5 |
| 67 | 380294 | 380560 | + | NZ_AP020335.1 | Hydrogenovibrio marinus |
| 68 | 3333604 | 3333906 | - | NZ_CP029185.2 | Limnobaculum parvum |
| 69 | 4146468 | 4146770 | - | NZ_CP034752.1 | Jinshanibacter zhutongyuii |
| 70 | 84878 | 85153 | + | NZ_CP018804.1 | Histophilus somni |
| 71 | 4405094 | 4405396 | - | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 72 | 389283 | 389558 | + | NZ_CP054058.1 | Scandinavium goeteborgense |
| 73 | 2990131 | 2990427 | + | NZ_CP048711.1 | Kineobactrum salinum |
| 74 | 1589153 | 1589410 | - | NZ_CP039268.1 | Thermochromatium tepidum ATCC 43061 |
| 75 | 114716 | 115003 | - | NZ_CP072844.1 | Psychrosphaera aestuarii |
| 76 | 4225420 | 4225671 | - | NC_015572.1 | Methylomonas methanica MC09 |
| 77 | 3245303 | 3245584 | - | NZ_CP065745.1 | Aeromonas allosaccharophila |
| 78 | 4455794 | 4456075 | - | NZ_AP022188.1 | Aeromonas media |
| 79 | 1122185 | 1122478 | + | NZ_CP041046.1 | Luteibacter pinisoli |
| 80 | 1190990 | 1191292 | + | NZ_CP023536.1 | Providencia alcalifaciens |
| 81 | 4298829 | 4299110 | - | NZ_LR134376.1 | Aeromonas encheleia |
| 82 | 3816275 | 3816556 | + | NZ_CP051883.1 | Aeromonas salmonicida |
| 83 | 712671 | 712946 | + | NZ_AP022642.1 | Pseudomonas otitidis |
| 84 | 3194300 | 3194551 | + | NZ_CP014476.1 | Methylomonas denitrificans |
| 85 | 6343534 | 6343830 | - | NC_007645.1 | Hahella chejuensis KCTC 2396 |
| 86 | 1079941 | 1080246 | + | NZ_CP041335.1 | Chitinolyticbacter meiyuanensis |
| 87 | 3484554 | 3484856 | - | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 88 | 3531193 | 3531495 | - | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 89 | 313988 | 314290 | + | NZ_CP023567.1 | Erwinia pyrifoliae |
| 90 | 613864 | 614142 | + | NZ_LS483443.1 | Aggregatibacter segnis ATCC 33393 |
| 91 | 287771 | 288070 | + | NZ_CP031769.1 | Salinimonas sediminis |
| 92 | 2011399 | 2011701 | + | NZ_CP023706.1 | Edwardsiella tarda |
| 93 | 284360 | 284662 | + | NZ_CP016043.1 | Edwardsiella hoshinae |
| 94 | 3481182 | 3481484 | - | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 95 | 1419679 | 1419981 | - | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 96 | 829862 | 830128 | + | NZ_CP035467.1 | Methylotuvimicrobium buryatense |
| 97 | 316249 | 316551 | + | NZ_CP065534.1 | Lonsdalea populi |
| 98 | 303573 | 303875 | + | NZ_CP040021.1 | Salinivibrio kushneri |
| 99 | 578121 | 578384 | + | NZ_AP021888.1 | Thiosulfativibrio zosterae |
| 100 | 3849007 | 3849282 | - | NZ_CP036536.1 | Salinimonas lutimaris |
| 101 | 3827583 | 3827858 | + | NZ_CP038469.1 | Citrobacter tructae |
| 102 | 3435765 | 3436040 | - | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 103 | 3451382 | 3451657 | - | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 104 | 3427389 | 3427664 | - | NZ_AP014857.1 | Escherichia albertii |
| 105 | 4186522 | 4186797 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 106 | 437004 | 437273 | + | NZ_CP054020.1 | Thiomicrorhabdus xiamenensis |
| 107 | 3140618 | 3140872 | - | NC_019940.1 | Thioflavicoccus mobilis 8321 |
| 108 | 1663050 | 1663325 | - | NZ_CP052766.1 | Alteromonas pelagimontana |
| 109 | 902269 | 902547 | + | NZ_CP015425.1 | [Haemophilus] ducreyi |
| 110 | 421192 | 421494 | + | NZ_LN907827.1 | Erwinia gerundensis |
| 111 | 3796672 | 3796947 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 112 | 223929 | 224204 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 113 | 3889730 | 3890005 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 114 | 3967085 | 3967360 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 115 | 77910 | 78185 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 116 | 4056974 | 4057249 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 117 | 1994871 | 1995146 | - | NZ_CP034759.1 | Litorilituus sediminis |
| 118 | 2027947 | 2028222 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 119 | 4202108 | 4202383 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 120 | 405335 | 405610 | + | NZ_CP035129.1 | Kosakonia cowanii |
| 121 | 4276095 | 4276370 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 122 | 4349750 | 4350025 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 123 | 4295031 | 4295306 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 124 | 4309498 | 4309773 | - | NC_015968.1 | Enterobacter soli |
| 125 | 3004518 | 3004793 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 126 | 4399045 | 4399320 | - | NZ_CP009756.1 | Enterobacter cloacae |
| 127 | 2857592 | 2857867 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 128 | 4051596 | 4051871 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 129 | 3558617 | 3558892 | + | NZ_CP045300.1 | Kosakonia arachidis |
| 130 | 1654477 | 1654752 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
| 131 | 4631148 | 4631423 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 132 | 4758797 | 4759072 | + | NC_013716.1 | Citrobacter rodentium ICC168 |
| 133 | 450956 | 451231 | + | NZ_CP014007.2 | Kosakonia oryzae |
| 134 | 978332 | 978607 | + | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 135 | 5139262 | 5139537 | + | NZ_CP011602.1 | Phytobacter ursingii |
| 136 | 4873009 | 4873284 | - | NZ_CP015113.1 | Kosakonia radicincitans |
| 137 | 308815 | 309117 | + | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 138 | 1267119 | 1267421 | - | NZ_CP007230.1 | Yersinia similis |
| 139 | 971129 | 971431 | + | NZ_CP029736.1 | Providencia rettgeri |
| 140 | 2996485 | 2996760 | - | NZ_CP023529.1 | Lelliottia amnigena |
| 141 | 3567481 | 3567783 | - | NZ_CP031123.2 | Providencia huaxiensis |
| 142 | 2522595 | 2522897 | + | NZ_CP011078.1 | Yersinia ruckeri |
| 143 | 4099721 | 4100023 | - | NZ_CP048796.1 | Providencia vermicola |
| 144 | 4046262 | 4046534 | - | NZ_LT615367.1 | Dickeya aquatica |
| 145 | 4426852 | 4427124 | - | NZ_CP031560.1 | Dickeya dianthicola |
| 146 | 5496656 | 5496958 | - | NC_005126.1 | Photorhabdus laumondii subsp. laumondii TTO1 |
| 147 | 3589857 | 3590159 | - | NZ_CP013187.1 | Pseudoalteromonas phenolica |
| 148 | 3861964 | 3862230 | - | NC_016112.1 | Methylotuvimicrobium alcaliphilum 20Z |
| 149 | 170741 | 171043 | + | NZ_CP009056.1 | Frischella perrara |
| 150 | 149997 | 150269 | + | NZ_CP034035.1 | Brenneria rubrifaciens |
| 151 | 474173 | 474445 | + | NZ_CP042220.2 | Dickeya poaceiphila |
| 152 | 4190064 | 4190336 | - | NZ_CP025799.1 | Dickeya zeae |
| 153 | 486328 | 486600 | + | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 154 | 1646675 | 1646947 | - | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 155 | 4389970 | 4390242 | - | NC_014500.1 | Dickeya dadantii 3937 |
| 156 | 4798104 | 4798376 | + | NZ_CP014137.1 | Brenneria goodwinii |
| 157 | 4416538 | 4416807 | - | NZ_CP060092.1 | Teredinibacter purpureus |
| 158 | 377447 | 377719 | + | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 159 | 714692 | 714967 | - | NZ_CP040428.1 | Jejubacter calystegiae |
| 160 | 2051124 | 2051399 | - | NC_006512.1 | Idiomarina loihiensis L2TR |
| 161 | 373428 | 373703 | + | NZ_CP061527.1 | Shigella dysenteriae |
| 162 | 3004504 | 3004806 | + | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 163 | 1565097 | 1565399 | + | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 164 | 4367396 | 4367698 | - | NZ_CP043727.1 | Yersinia canariae |
| 165 | 333448 | 333750 | + | NZ_CP011118.1 | Yersinia enterocolitica |
| 166 | 4381502 | 4381804 | - | NZ_CP032487.1 | Yersinia hibernica |
| 167 | 137876 | 138178 | + | NZ_CP046293.1 | Yersinia intermedia |
| 168 | 370312 | 370614 | + | NZ_LS483470.1 | Leminorella richardii |
| 169 | 617796 | 618059 | + | NZ_CP031093.1 | Hydrocarboniclastica marina |
| 170 | 638123 | 638392 | + | NZ_AP018724.1 | Sulfurivermis fontis |
| 171 | 2338802 | 2339101 | - | NZ_AP014879.1 | Sulfuricaulis limicola |
| 172 | 164397 | 164672 | + | NZ_CP011041.1 | Pseudoalteromonas tetraodonis |
| 173 | 169342 | 169617 | + | NZ_CP011030.1 | Pseudoalteromonas issachenkonii |
| 174 | 415124 | 415399 | + | NZ_CP014322.1 | Alteromonas addita |
| 175 | 3731335 | 3731610 | - | NC_015554.1 | Alteromonas naphthalenivorans |
| 176 | 4875577 | 4875879 | - | NC_012962.1 | Photorhabdus asymbiotica |
| 177 | 460470 | 460772 | - | NZ_CP022355.1 | Paraphotobacterium marinum |
| 178 | 2593163 | 2593465 | - | NZ_CP009787.1 | Yersinia rohdei |
| 179 | 2129582 | 2129878 | - | NZ_CP012418.1 | Kangiella sediminilitoris |
| 180 | 1383277 | 1383552 | + | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 181 | 2900207 | 2900482 | + | NZ_CP014136.1 | Gibbsiella quercinecans |
| 182 | 4845218 | 4845493 | - | NZ_CP038662.1 | Serratia nematodiphila |
| 183 | 4195266 | 4195568 | - | NZ_CP072455.1 | Xenorhabdus budapestensis |
| 184 | 337295 | 337570 | + | NZ_CP071320.1 | Serratia ureilytica |
| 185 | 4073316 | 4073591 | - | NZ_CP016948.1 | Serratia surfactantfaciens |
| 186 | 4809495 | 4809770 | - | NZ_LT906479.1 | Serratia ficaria |
| 187 | 4895966 | 4896241 | - | NZ_CP048784.1 | Serratia liquefaciens |
| 188 | 5011991 | 5012266 | - | NC_015567.1 | Serratia plymuthica AS9 |
| 189 | 451402 | 451677 | + | NZ_CP008849.1 | Alteromonas australica |
| 190 | 300394 | 300669 | + | NZ_CP046670.1 | Alteromonas mediterranea |
| 191 | 1118252 | 1118527 | - | NZ_CP065640.1 | Serratia rubidaea |
| 192 | 2120865 | 2121161 | - | NZ_CP010975.1 | Kangiella geojedonensis |
| 193 | 3429121 | 3429396 | - | NZ_CP027523.1 | Pseudoalteromonas carrageenovora |
| 194 | 250835 | 251137 | + | NZ_CP011039.1 | Pseudoalteromonas spongiae UST010723-006 |
| 195 | 962512 | 962814 | + | NZ_CP009888.1 | Pseudoalteromonas piratica |
| 196 | 4939937 | 4940212 | - | NZ_LR134494.1 | Serratia quinivorans |
| 197 | 245517 | 245792 | + | NZ_CP032090.1 | Pseudoalteromonas donghaensis |
| 198 | 3489295 | 3489597 | - | NZ_FO704551.1 | Xenorhabdus poinarii G6 |
| 199 | 1246238 | 1246534 | + | NC_007912.1 | Saccharophagus degradans 2-40 |
| 200 | 310535 | 310810 | + | NC_014541.1 | Ferrimonas balearica DSM 9799 |
| 201 | 1705270 | 1705572 | + | NZ_CP026364.1 | Proteus hauseri |
| 202 | 1318054 | 1318329 | - | NZ_CP011254.1 | Serratia fonticola |
| 203 | 135911 | 136213 | + | NZ_CP047349.1 | Proteus terrae subsp. cibarius |
| 204 | 3583980 | 3584282 | + | NC_010554.1 | Proteus mirabilis HI4320 |
| 205 | 154110 | 154412 | + | NZ_CP007445.1 | Gilliamella apicola |
| 206 | 2066636 | 2066911 | + | NZ_CP019628.1 | Pseudoalteromonas aliena |
| 207 | 2202086 | 2202361 | + | NZ_CP020465.1 | Cognaticolwellia beringensis |
| 208 | 255143 | 255412 | + | NZ_CP060084.1 | Teredinibacter haidensis |
| 209 | 2320566 | 2320871 | + | NZ_CP041660.1 | Catenovulum sediminis |
| 210 | 3827189 | 3827491 | - | NZ_CP012621.1 | Zobellella denitrificans |
| 211 | 3543731 | 3544006 | - | NZ_CP011025.1 | Pseudoalteromonas arctica A 37-1-2 |
| 212 | 608452 | 608751 | + | NC_012560.1 | Azotobacter vinelandii DJ |
| 213 | 230762 | 231028 | + | NZ_CP061941.1 | Marinomonas algicola |
| 214 | 4235193 | 4235495 | - | NZ_CP038498.1 | Pectobacterium punjabense |
| 215 | 2136463 | 2136765 | + | NZ_CP047495.1 | Pectobacterium brasiliense |
| 216 | 478242 | 478544 | + | NZ_CP051652.1 | Pectobacterium carotovorum |
| 217 | 519291 | 519593 | + | NZ_CP065044.1 | Pectobacterium aroidearum |
| 218 | 4395632 | 4395934 | - | NZ_CP034938.1 | Pectobacterium odoriferum |
| 219 | 3208437 | 3208739 | - | NZ_CP017482.1 | Pectobacterium polaris |
| 220 | 4734511 | 4734813 | + | NZ_CP015749.1 | Pectobacterium parmentieri |
| 221 | 1136818 | 1137120 | - | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 222 | 3615090 | 3615392 | - | NZ_CP034148.1 | Pantoea agglomerans |
| 223 | 456172 | 456474 | + | NZ_CP045720.1 | Pantoea eucalypti |
| 224 | 466308 | 466610 | + | NZ_CP038853.1 | Pantoea vagans |
| 225 | 2448989 | 2449291 | - | NZ_CP049115.1 | Pantoea stewartii |
| 226 | 456695 | 456997 | + | NC_017554.1 | Pantoea ananatis PA13 |
| 227 | 3627785 | 3628057 | - | NZ_AP014545.1 | Amphritea japonica ATCC BAA-1530 |
| 228 | 2214834 | 2215136 | + | NZ_CP072133.1 | Pseudoalteromonas xiamenensis |
| 229 | 647364 | 647645 | + | NZ_CP003182.2 | Granulibacter bethesdensis CGDNIH4 |
| 230 | 3416784 | 3417059 | + | NZ_CP045302.1 | Azotobacter salinestris |
| 231 | 607812 | 608114 | + | NZ_CP005974.1 | Photobacterium gaetbulicola Gung47 |
| 232 | 4179027 | 4179302 | - | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 233 | 3514011 | 3514307 | - | NZ_CP036422.1 | Halioglobus maricola |
| 234 | 129513 | 129809 | + | NZ_CP014226.1 | Halomonas chromatireducens |
| 235 | 3959518 | 3959793 | - | NZ_CP011835.1 | Azotobacter chroococcum |
| 236 | 2722066 | 2722341 | - | NZ_CP029347.1 | Saliniradius amylolyticus |
| 237 | 3954571 | 3954846 | - | NZ_LR134340.1 | Escherichia marmotae |
| 238 | 805796 | 806089 | + | NZ_CP043042.1 | Marinobacter fonticola |
| 239 | 3591842 | 3592144 | - | NZ_CP040449.1 | Aeromonas simiae |
| 240 | 2372673 | 2372948 | - | NZ_CP057657.1 | Escherichia fergusonii |
| 241 | 452126 | 452398 | + | NC_012880.1 | Musicola paradisiaca Ech703 |
| 242 | 504638 | 504913 | + | NZ_CP060111.1 | Klebsiella michiganensis |
| 243 | 3611911 | 3612183 | - | NC_020888.1 | Thalassolituus oleivorans MIL-1 |
| 244 | 4446028 | 4446303 | - | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 245 | 2695967 | 2696242 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 246 | 422525 | 422800 | + | NZ_CP041247.1 | Raoultella electrica |
| 247 | 1255624 | 1255899 | - | NZ_CP026047.1 | Raoultella planticola |
| 248 | 460864 | 461139 | + | NZ_CP046672.1 | Raoultella ornithinolytica |
| 249 | 424092 | 424367 | + | NZ_CP050508.1 | Raoultella terrigena |
| 250 | 2678155 | 2678412 | - | NC_013851.1 | Allochromatium vinosum DSM 180 |
| 251 | 421952 | 422227 | + | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 252 | 4869005 | 4869280 | - | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 253 | 431487 | 431762 | + | NZ_CP054254.1 | Klebsiella variicola |
| 254 | 502312 | 502608 | + | NZ_CP014544.1 | Zhongshania aliphaticivorans |
| 255 | 2115407 | 2115682 | + | NZ_CP042941.1 | Atlantibacter hermannii |
| 256 | 1444780 | 1445055 | - | NZ_CP053416.1 | Salmonella bongori |
| 257 | 2829194 | 2829469 | + | NZ_CP044098.1 | Citrobacter portucalensis |
| 258 | 425757 | 426032 | + | NZ_LR134475.1 | Klebsiella aerogenes |
| 259 | 2253404 | 2253679 | - | NZ_CP033744.1 | Citrobacter freundii |
| 260 | 27813 | 28088 | - | NZ_CP045205.1 | Citrobacter telavivensis |
| 261 | 1179377 | 1179652 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 262 | 543787 | 544062 | + | NZ_CP036175.1 | Klebsiella huaxiensis |
| 263 | 3416934 | 3417218 | + | NZ_CP041783.1 | Shewanella donghaensis |
| 264 | 723547 | 723840 | + | NZ_CP011494.1 | Marinobacter psychrophilus |
| 265 | 234352 | 234654 | + | NZ_CP028897.1 | Dongshaea marina |
| 266 | 3594649 | 3594924 | - | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 267 | 446761 | 447036 | + | NZ_CP013990.1 | Leclercia adecarboxylata |
| 268 | 458633 | 458908 | + | NZ_CP045845.1 | Kluyvera intermedia |
| 269 | 366616 | 366912 | + | NZ_CP051183.1 | Bermanella marisrubri |
| 270 | 2988990 | 2989292 | - | NZ_CP044060.1 | Aeromonas veronii |
| 271 | 328808 | 329110 | + | NZ_CP050851.1 | Aeromonas hydrophila |
| 272 | 305971 | 306273 | + | NZ_LR134531.1 | Pragia fontium |
| 273 | 480268 | 480570 | + | NZ_CP006569.1 | Sodalis praecaptivus |
| 274 | 704878 | 705132 | - | NZ_CP059082.1 | Halomonas titanicae |
| 275 | 3792331 | 3792624 | - | NZ_CP020931.1 | Marinobacter salarius |
| 276 | 177669 | 177944 | + | NZ_CP033065.1 | Pseudoalteromonas agarivorans |
| 277 | 180627 | 180902 | + | NZ_CP023464.1 | Pseudoalteromonas atlantica |
| 278 | 176432 | 176707 | + | NZ_CP011028.1 | Pseudoalteromonas espejiana DSM 9414 |
| 279 | 92575 | 92844 | - | NZ_CP020083.1 | Blastomonas fulva |
| 280 | 212370 | 212624 | + | NZ_CP048602.1 | Halomonas piezotolerans |
| 281 | 206801 | 207055 | + | NZ_AP022843.1 | Halomonas hydrothermalis |
| 282 | 206262 | 206516 | + | NZ_CP065135.1 | Halomonas venusta |
| 283 | 1684819 | 1685121 | - | NZ_CP011104.1 | Photorhabdus thracensis |
| 284 | 4258021 | 4258323 | - | NZ_CP050150.1 | Hafnia alvei |
| 285 | 3642304 | 3642558 | - | NZ_CP021435.1 | Halomonas beimenensis |
| 286 | 2551611 | 2551865 | - | NC_002977.6 | Methylococcus capsulatus str. Bath |
| 287 | 3681668 | 3681934 | - | NC_015559.1 | Marinomonas posidonica IVIA-Po-181 |
| 288 | 584782 | 585084 | + | NZ_CP070624.1 | Photobacterium damselae subsp. damselae |
| 289 | 1177856 | 1178110 | - | NZ_CP023559.1 | Salinicola tamaricis |
| 290 | 3164164 | 3164466 | - | NZ_CP016176.1 | Xenorhabdus hominickii |
| 291 | 392924 | 393226 | + | NZ_AP023184.1 | Buttiauxella agrestis |
| 292 | 3031061 | 3031315 | - | NZ_CP043420.1 | Kushneria phosphatilytica |
| 293 | 272792 | 273094 | + | NZ_FO704550.1 | Xenorhabdus doucetiae |
| 294 | 252996 | 253265 | + | NC_015276.1 | Marinomonas mediterranea MMB-1 |
| 295 | 1777352 | 1777618 | - | NZ_CP070273.1 | Marinomonas foliarum |
| 296 | 4310691 | 4310957 | - | NZ_CP061081.1 | Marinomonas arctica |
| 297 | 387718 | 388011 | + | NC_017506.1 | Marinobacter adhaerens HP15 |
| 298 | 764596 | 764850 | - | NZ_CP021323.1 | Kushneria konosiri |
| 299 | 2534650 | 2534904 | + | NZ_CP021358.1 | Kushneria marisflavi |
| 300 | 5035406 | 5035660 | - | NZ_CP017147.1 | Bosea vaviloviae |
| 301 | 974825 | 975127 | - | NZ_CP014056.2 | Grimontia hollisae |
| 302 | 1199723 | 1199998 | + | NZ_CP011971.1 | Steroidobacter denitrificans |
| 303 | 2676835 | 2677128 | - | NZ_CP017715.1 | Marinobacter salinus |
| 304 | 529771 | 530040 | + | NZ_CP011805.1 | Pelagerythrobacter marensis |
| 305 | 2229780 | 2230052 | - | NZ_CP060718.1 | Sphingomonas lutea |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_004556.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00338.24 | 1.0 | 304 | 1302 | same-strand | Ribosomal protein S10p/S20e |
| 2 | PF00573.24 | 1.0 | 303 | 24.0 | same-strand | Ribosomal protein L4/L1 family |
| 3 | PF03947.20 | 1.0 | 303 | 18.0 | same-strand | Ribosomal Proteins L2, C-terminal domain |
| 4 | PF00181.25 | 1.0 | 303 | 18.0 | same-strand | Ribosomal Proteins L2, RNA binding domain |
| 5 | PF00203.23 | 0.98 | 298 | 856 | same-strand | Ribosomal protein S19 |
| 6 | PF00237.21 | 1.0 | 304 | 1149 | same-strand | Ribosomal protein L22p/L17e |
| 7 | PF00189.22 | 1.0 | 304 | 1499 | same-strand | Ribosomal protein S3, C-terminal domain |
| 8 | PF07650.19 | 1.0 | 304 | 1499 | same-strand | KH domain |
| 9 | PF00252.20 | 0.99 | 301 | 2213.0 | same-strand | Ribosomal protein L16p/L10e |
++ More..