Result : Q87E74
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 50S ribosomal protein L29 |
| NCBI Accession ID | AE009442.1 |
| Organism | Xylella fastidiosa (strain Temecula1 / ATCC 700964) |
| Left | 541171 |
| Right | 541368 |
| Strand | + |
| Nucleotide Sequence | ATGGATATTCAACAATTTCGCGGTAAATCTGTTGATGATTTGAAGGCTCATTTGATTGAGTTGCGTAAAGAACAGTTTTCGATGCGTATGCAAGTGGCTATGGGTCAATTTCAAAAGACTCATGAAATCCGTAGAGTGCGCCGTAATATTGCTCGTGTGAAGTATCTATTGTCTTGGATAAATAGGACGCCGGCGTGA |
| Sequence | MDIQQFRGKSVDDLKAHLIELRKEQFSMRMQVAMGQFQKTHEIRRVRRNIARVKYLLSWINRTPA |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl09943. Profile Description: N/A. This family represents the N-terminal region (approximately 8 residues) of the eukaryotic mitochondrial 39-S ribosomal protein L47 (MRP-L47). Mitochondrial ribosomal proteins (MRPs) are the counterparts of the cytoplasmic ribosomal proteins, in that they fulfil similar functions in protein biosynthesis. However, they are distinct in number, features and primary structure. |
| Pubmed ID | 12533478 |
| Domain | CDD:415815 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | Q87E74 |
| ORF Length (Amino Acid) | 65 |
++ More..
| Conservation Analysis |
No. of Species: 305
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 541171 | 541368 | + | NC_004556.1 | Xylella fastidiosa Temecula1 |
| 2 | 820691 | 820876 | - | NZ_CP043476.1 | Xanthomonas hyacinthi |
| 3 | 898124 | 898309 | + | NZ_CP033326.1 | Xanthomonas cucurbitae |
| 4 | 2411051 | 2411236 | - | NZ_CP016878.1 | Xanthomonas hortorum |
| 5 | 979309 | 979494 | + | NZ_CP012900.1 | Stenotrophomonas acidaminiphila |
| 6 | 898710 | 898895 | + | NZ_CP007810.1 | Xanthomonas oryzae pv. oryzicola |
| 7 | 1153706 | 1153891 | + | NZ_CP028127.1 | Xanthomonas vasicola pv. vasculorum |
| 8 | 3774474 | 3774659 | - | NZ_CP058243.1 | Xanthomonas campestris pv. raphani |
| 9 | 4109999 | 4110184 | + | NZ_CP018725.1 | Xanthomonas vesicatoria ATCC 35937 |
| 10 | 521069 | 521254 | + | NZ_CP046570.1 | Xanthomonas albilineans |
| 11 | 924436 | 924621 | + | NZ_CP037883.1 | Stenotrophomonas indicatrix |
| 12 | 1150043 | 1150228 | + | NZ_CP048044.1 | Xanthomonas citri |
| 13 | 1183190 | 1183375 | + | NZ_CP072268.1 | Xanthomonas euvesicatoria pv. alfalfae |
| 14 | 3134034 | 3134219 | - | NZ_LT853882.1 | Xanthomonas fragariae |
| 15 | 876830 | 877015 | + | NZ_LS483377.1 | Stenotrophomonas maltophilia |
| 16 | 1858973 | 1859158 | + | NZ_CP060731.1 | Pseudoxanthomonas mexicana |
| 17 | 336329 | 336517 | + | NZ_CP029556.1 | Lysobacter oculi |
| 18 | 689070 | 689267 | + | NZ_CP053627.1 | Xylella taiwanensis |
| 19 | 2869026 | 2869211 | - | NZ_CP029843.1 | Lysobacter maris |
| 20 | 2330636 | 2330821 | + | NZ_CP042218.1 | Luteimonas granuli |
| 21 | 4212696 | 4212881 | - | NZ_CP011131.1 | Lysobacter gummosus |
| 22 | 2685988 | 2686173 | - | NZ_CP041242.1 | Lysobacter alkalisoli |
| 23 | 1562197 | 1562382 | + | NZ_AP014940.1 | Lysobacter enzymogenes |
| 24 | 4419370 | 4419555 | - | NZ_CP023465.1 | Lysobacter capsici |
| 25 | 4494706 | 4494891 | - | NZ_CP011129.1 | Lysobacter antibioticus |
| 26 | 1083696 | 1083881 | + | NZ_CP046603.1 | Lysobacter soli |
| 27 | 1877331 | 1877516 | - | NZ_CP071517.1 | Lysobacter arenosi |
| 28 | 2269486 | 2269671 | + | NZ_CP060820.1 | Lysobacter solisilvae (ex Woo and Kim 2020) |
| 29 | 1364234 | 1364422 | + | NZ_CP023406.1 | Luteimonas chenhongjianii |
| 30 | 2579866 | 2580066 | - | NC_016147.2 | Pseudoxanthomonas spadix BD-a59 |
| 31 | 2622910 | 2623116 | + | NZ_CP060711.1 | Thermomonas brevis |
| 32 | 3004677 | 3004862 | - | NZ_CP015249.1 | Dokdonella koreensis DS-123 |
| 33 | 303456 | 303647 | + | NZ_CP031416.1 | Gallaecimonas mangrovi |
| 34 | 587711 | 587902 | + | NZ_CP070624.1 | Photobacterium damselae subsp. damselae |
| 35 | 610734 | 610925 | + | NZ_CP005974.1 | Photobacterium gaetbulicola Gung47 |
| 36 | 457645 | 457836 | - | NZ_CP022355.1 | Paraphotobacterium marinum |
| 37 | 270171 | 270362 | + | NZ_CP071325.1 | Photobacterium ganghwense |
| 38 | 1604196 | 1604387 | - | NZ_CP015031.1 | Basfia succiniciproducens |
| 39 | 2001829 | 2002020 | - | NC_006300.1 | [Mannheimia] succiniciproducens MBEL55E |
| 40 | 2046678 | 2046863 | - | NZ_CP014841.1 | Dyella thiooxydans |
| 41 | 168231 | 168422 | + | NZ_CP006954.1 | Bibersteinia trehalosi USDA-ARS-USMARC-188 |
| 42 | 3299332 | 3299517 | - | NZ_CP064030.1 | Dyella caseinilytica |
| 43 | 1088540 | 1088731 | + | NZ_CP028926.1 | Pasteurella multocida |
| 44 | 1307762 | 1307962 | + | NZ_CP004388.1 | Thalassospira xiamenensis M-5 = DSM 17429 |
| 45 | 5493839 | 5494030 | - | NC_005126.1 | Photorhabdus laumondii subsp. laumondii TTO1 |
| 46 | 19304 | 19495 | + | NZ_CP016180.1 | Pasteurella skyensis |
| 47 | 410243 | 410434 | - | NZ_LT906463.1 | Haemophilus pittmaniae |
| 48 | 1643860 | 1644051 | - | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 49 | 2042885 | 2043076 | + | NZ_CP030753.1 | Actinobacillus pleuropneumoniae |
| 50 | 1917916 | 1918107 | - | NZ_CP007715.1 | Actinobacillus equuli subsp. equuli |
| 51 | 1912618 | 1912809 | - | NZ_CP009159.1 | Actinobacillus suis ATCC 33415 |
| 52 | 205832 | 206023 | - | NZ_CP009610.1 | Haemophilus influenzae |
| 53 | 301461 | 301652 | - | NZ_LS483458.1 | Haemophilus haemolyticus |
| 54 | 216126 | 216317 | - | NZ_LS483429.1 | Haemophilus aegyptius |
| 55 | 1967454 | 1967645 | - | NZ_CP016604.1 | Otariodibacter oris |
| 56 | 616776 | 616967 | + | NZ_LS483443.1 | Aggregatibacter segnis ATCC 33393 |
| 57 | 519911 | 520102 | - | NZ_CP042382.1 | Pistricoccus aurantiacus |
| 58 | 1125117 | 1125302 | + | NZ_CP041046.1 | Luteibacter pinisoli |
| 59 | 2620016 | 2620207 | - | NZ_CP009977.1 | Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 |
| 60 | 124994 | 125185 | - | NC_013456.1 | Vibrio antiquarius |
| 61 | 2996135 | 2996326 | - | NZ_CP031781.1 | Vibrio parahaemolyticus |
| 62 | 87788 | 87979 | + | NZ_CP018804.1 | Histophilus somni |
| 63 | 130896 | 131087 | - | NZ_LR134167.1 | Avibacterium volantium |
| 64 | 4232379 | 4232570 | - | NZ_CP038498.1 | Pectobacterium punjabense |
| 65 | 588214 | 588405 | + | NZ_CP015029.1 | Frederiksenia canicola |
| 66 | 2014082 | 2014273 | + | NZ_LT906448.1 | Pasteurella dagmatis |
| 67 | 1192459 | 1192650 | - | NZ_LR134327.1 | Aggregatibacter aphrophilus ATCC 33389 |
| 68 | 477070 | 477261 | + | NZ_CP042220.2 | Dickeya poaceiphila |
| 69 | 4043447 | 4043638 | - | NZ_LT615367.1 | Dickeya aquatica |
| 70 | 455021 | 455212 | + | NC_012880.1 | Musicola paradisiaca Ech703 |
| 71 | 4187248 | 4187439 | - | NZ_CP025799.1 | Dickeya zeae |
| 72 | 380343 | 380534 | + | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 73 | 4387154 | 4387345 | - | NC_014500.1 | Dickeya dadantii 3937 |
| 74 | 3318774 | 3318965 | + | NZ_CP009460.1 | Dickeya fangzhongdai |
| 75 | 2171430 | 2171621 | + | NZ_CP046793.1 | Vibrio metschnikovii |
| 76 | 1021521 | 1021712 | + | NZ_LR134510.1 | Actinobacillus delphinicola |
| 77 | 2056119 | 2056310 | - | NZ_CP006944.1 | Mannheimia varigena USDA-ARS-USMARC-1312 |
| 78 | 334585 | 334776 | - | NZ_CP046531.1 | Mannheimia ovis |
| 79 | 538683 | 538874 | + | NZ_CP061280.1 | Mannheimia bovis |
| 80 | 363087 | 363278 | - | NZ_CP055305.1 | Mannheimia pernigra |
| 81 | 1593665 | 1593856 | + | NC_011852.1 | Glaesserella parasuis SH0165 |
| 82 | 2548405 | 2548596 | - | NC_021883.1 | Mannheimia haemolytica USMARC_2286 |
| 83 | 697720 | 697911 | + | NZ_CP029206.1 | Actinobacillus porcitonsillarum |
| 84 | 108042 | 108233 | + | NZ_CP015581.1 | Tatumella citrea |
| 85 | 1307783 | 1307983 | + | NZ_CP024199.1 | Thalassospira marina |
| 86 | 2702241 | 2702432 | - | NZ_CP016414.1 | Vibrio scophthalmi |
| 87 | 1903504 | 1903704 | + | NZ_CP031555.1 | Thalassospira indica |
| 88 | 905183 | 905374 | + | NZ_CP015425.1 | [Haemophilus] ducreyi |
| 89 | 454278 | 454469 | + | NZ_CP008849.1 | Alteromonas australica |
| 90 | 4255203 | 4255394 | - | NZ_CP050150.1 | Hafnia alvei |
| 91 | 4434807 | 4434998 | - | NZ_CP041036.1 | Shewanella polaris |
| 92 | 303270 | 303461 | + | NZ_CP046670.1 | Alteromonas mediterranea |
| 93 | 2323492 | 2323683 | + | NZ_CP041660.1 | Catenovulum sediminis |
| 94 | 2096378 | 2096569 | - | NZ_CP016605.1 | Bisgaardia hudsonensis |
| 95 | 4402280 | 4402471 | - | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 96 | 2142891 | 2143076 | - | NZ_AP018560.1 | Aerosticca soli |
| 97 | 2139388 | 2139579 | + | NZ_CP047495.1 | Pectobacterium brasiliense |
| 98 | 481167 | 481358 | + | NZ_CP051652.1 | Pectobacterium carotovorum |
| 99 | 522216 | 522407 | + | NZ_CP065044.1 | Pectobacterium aroidearum |
| 100 | 4392818 | 4393009 | - | NZ_CP034938.1 | Pectobacterium odoriferum |
| 101 | 3205623 | 3205814 | - | NZ_CP017482.1 | Pectobacterium polaris |
| 102 | 4737436 | 4737627 | + | NZ_CP015749.1 | Pectobacterium parmentieri |
| 103 | 1134004 | 1134195 | - | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 104 | 4013767 | 4013958 | - | NZ_CP037951.1 | Parashewanella tropica |
| 105 | 132456 | 132647 | + | NZ_CP014226.1 | Halomonas chromatireducens |
| 106 | 418005 | 418196 | + | NZ_CP014322.1 | Alteromonas addita |
| 107 | 3728538 | 3728729 | - | NC_015554.1 | Alteromonas naphthalenivorans |
| 108 | 2618803 | 2618994 | + | NZ_CP036200.1 | Shewanella maritima |
| 109 | 972016 | 972207 | - | NZ_CP014056.2 | Grimontia hollisae |
| 110 | 226556 | 226747 | + | NZ_CP069213.1 | Shewanella litorisediminis |
| 111 | 256398 | 256589 | + | NC_008700.1 | Shewanella amazonensis SB2B |
| 112 | 4415545 | 4415736 | + | NZ_CP020373.1 | Shewanella khirikhana |
| 113 | 4677727 | 4677918 | - | NZ_CP046378.1 | Shewanella algae |
| 114 | 1774564 | 1774755 | - | NZ_CP070273.1 | Marinomonas foliarum |
| 115 | 421894 | 422085 | + | NC_016041.1 | Glaciecola nitratireducens FR1064 |
| 116 | 2687602 | 2687787 | + | NZ_CP017480.1 | Luteibacter rhizovicinus DSM 16549 |
| 117 | 4307903 | 4308094 | - | NZ_CP061081.1 | Marinomonas arctica |
| 118 | 3678880 | 3679071 | - | NC_015559.1 | Marinomonas posidonica IVIA-Po-181 |
| 119 | 1858664 | 1858852 | - | NZ_CP041730.1 | Chitinimonas arctica |
| 120 | 2466883 | 2467077 | + | NC_013960.1 | Nitrosococcus halophilus Nc 4 |
| 121 | 3262067 | 3262258 | + | NZ_CP037953.1 | Permianibacter aggregans |
| 122 | 330891 | 331082 | + | NZ_AP018933.1 | Zymobacter palmae |
| 123 | 458129 | 458320 | + | NZ_CP033040.1 | Thiomicrorhabdus indica |
| 124 | 241847 | 242038 | + | NZ_CP022358.1 | Shewanella bicestrii |
| 125 | 547287 | 547478 | + | NZ_CP031415.1 | Saccharospirillum mangrovi |
| 126 | 2599307 | 2599513 | - | NZ_CP044117.1 | Roseomonas mucosa |
| 127 | 233623 | 233814 | + | NZ_CP061941.1 | Marinomonas algicola |
| 128 | 1005022 | 1005216 | + | NC_014816.1 | Asticcacaulis excentricus CB 48 |
| 129 | 3502714 | 3502914 | - | NZ_CP035704.1 | Pseudolysobacter antarcticus |
| 130 | 379883 | 380077 | + | NC_012968.1 | Methylotenera mobilis JLW8 |
| 131 | 2404644 | 2404829 | + | NC_017856.1 | Methylophaga frappieri |
| 132 | 2398076 | 2398270 | - | NZ_AP018725.1 | Sulfuriflexus mobilis |
| 133 | 983793 | 983984 | - | NZ_CP048812.1 | Halomonas socia |
| 134 | 775252 | 775446 | + | NC_013959.1 | Sideroxydans lithotrophicus ES-1 |
| 135 | 380447 | 380641 | + | NC_014207.1 | Methylotenera versatilis 301 |
| 136 | 3278513 | 3278716 | - | NZ_CP041025.1 | Paremcibacter congregatus |
| 137 | 1082827 | 1083015 | + | NZ_CP041335.1 | Chitinolyticbacter meiyuanensis |
| 138 | 2913277 | 2913462 | - | NC_017857.3 | Methylophaga nitratireducenticrescens |
| 139 | 3639466 | 3639657 | - | NZ_CP021435.1 | Halomonas beimenensis |
| 140 | 3932028 | 3932219 | - | NZ_CP065435.1 | Halomonas sp. SS10-MC5 |
| 141 | 3881901 | 3882101 | - | NZ_CP053069.1 | Usitatibacter rugosus |
| 142 | 3843633 | 3843824 | - | NZ_CP054301.1 | Marinomonas primoryensis |
| 143 | 1149607 | 1149798 | + | NZ_LR134313.1 | Neisseria canis |
| 144 | 3028214 | 3028405 | - | NZ_CP043420.1 | Kushneria phosphatilytica |
| 145 | 400549 | 400755 | + | NZ_CP030126.1 | Indioceanicola profundi |
| 146 | 255866 | 256057 | + | NC_015276.1 | Marinomonas mediterranea MMB-1 |
| 147 | 3262894 | 3263100 | + | NZ_CP025611.1 | Niveispirillum cyanobacteriorum |
| 148 | 2183230 | 2183421 | - | NZ_CP059569.1 | Kingella oralis |
| 149 | 288938 | 289129 | + | NC_014532.2 | Halomonas elongata DSM 2581 |
| 150 | 1967510 | 1967701 | + | NZ_CP018139.1 | Halomonas aestuarii |
| 151 | 650309 | 650494 | + | NZ_CP003182.2 | Granulibacter bethesdensis CGDNIH4 |
| 152 | 434593 | 434787 | + | NZ_AP018558.1 | Hydrogenophilus thermoluteolus |
| 153 | 3261328 | 3261528 | - | NZ_CP049241.1 | Rhizobium pseudoryzae |
| 154 | 311737 | 311928 | + | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 155 | 1264308 | 1264499 | - | NZ_CP007230.1 | Yersinia similis |
| 156 | 3561515 | 3561706 | + | NZ_CP045300.1 | Kosakonia arachidis |
| 157 | 4893153 | 4893344 | - | NZ_CP048784.1 | Serratia liquefaciens |
| 158 | 1315241 | 1315432 | - | NZ_CP011254.1 | Serratia fonticola |
| 159 | 1386174 | 1386365 | + | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 160 | 1220634 | 1220831 | + | NZ_LT906482.1 | Eikenella corrodens |
| 161 | 3776328 | 3776519 | + | NZ_CP051180.1 | Ferrimonas lipolytica |
| 162 | 4062580 | 4062771 | - | NC_013892.1 | Xenorhabdus bovienii SS-2004 |
| 163 | 313416 | 313607 | + | NC_014541.1 | Ferrimonas balearica DSM 9799 |
| 164 | 110811 | 111008 | + | NZ_CP038018.1 | Eikenella exigua |
| 165 | 3486478 | 3486669 | - | NZ_FO704551.1 | Xenorhabdus poinarii G6 |
| 166 | 275720 | 275911 | + | NZ_FO704550.1 | Xenorhabdus doucetiae |
| 167 | 3165816 | 3166007 | - | NZ_CP060401.1 | Xenorhabdus nematophila |
| 168 | 4192449 | 4192640 | - | NZ_CP072455.1 | Xenorhabdus budapestensis |
| 169 | 3161347 | 3161538 | - | NZ_CP016176.1 | Xenorhabdus hominickii |
| 170 | 2590352 | 2590543 | - | NZ_CP009787.1 | Yersinia rohdei |
| 171 | 3007426 | 3007617 | + | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 172 | 1568019 | 1568210 | + | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 173 | 4364585 | 4364776 | - | NZ_CP043727.1 | Yersinia canariae |
| 174 | 336370 | 336561 | + | NZ_CP011118.1 | Yersinia enterocolitica |
| 175 | 4378691 | 4378882 | - | NZ_CP032487.1 | Yersinia hibernica |
| 176 | 140799 | 140990 | + | NZ_CP046293.1 | Yersinia intermedia |
| 177 | 3090222 | 3090413 | - | NZ_CP028901.1 | Algicoccus marinus |
| 178 | 2278126 | 2278317 | - | NZ_CP035688.1 | Vibrio metoecus |
| 179 | 2620372 | 2620563 | - | NZ_AP014524.1 | Vibrio cholerae MS6 |
| 180 | 3096292 | 3096483 | + | NZ_CP014035.2 | Vibrio fluvialis |
| 181 | 3372357 | 3372560 | - | NC_007626.1 | Magnetospirillum magneticum AMB-1 |
| 182 | 2025133 | 2025324 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 183 | 4199294 | 4199485 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 184 | 4273281 | 4273472 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 185 | 4292217 | 4292408 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 186 | 240778 | 240969 | + | NZ_LR134201.1 | Cedecea lapagei |
| 187 | 3007416 | 3007607 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 188 | 4396231 | 4396422 | - | NZ_CP009756.1 | Enterobacter cloacae |
| 189 | 2854778 | 2854969 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 190 | 4054494 | 4054685 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 191 | 4628334 | 4628525 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 192 | 2993671 | 2993862 | - | NZ_CP023529.1 | Lelliottia amnigena |
| 193 | 4306684 | 4306875 | - | NC_015968.1 | Enterobacter soli |
| 194 | 347311 | 347502 | + | NZ_CP047475.1 | Vibrio astriarenae |
| 195 | 4032625 | 4032816 | + | NZ_CP067057.1 | Rahnella aceris |
| 196 | 2525517 | 2525708 | + | NZ_CP011078.1 | Yersinia ruckeri |
| 197 | 340192 | 340383 | + | NZ_CP071320.1 | Serratia ureilytica |
| 198 | 4070503 | 4070694 | - | NZ_CP016948.1 | Serratia surfactantfaciens |
| 199 | 4806682 | 4806873 | - | NZ_LT906479.1 | Serratia ficaria |
| 200 | 4842405 | 4842596 | - | NZ_CP038662.1 | Serratia nematodiphila |
| 201 | 2903104 | 2903295 | + | NZ_CP014136.1 | Gibbsiella quercinecans |
| 202 | 1115439 | 1115630 | - | NZ_CP065640.1 | Serratia rubidaea |
| 203 | 1708198 | 1708389 | + | NZ_CP026364.1 | Proteus hauseri |
| 204 | 138839 | 139030 | + | NZ_CP047349.1 | Proteus terrae subsp. cibarius |
| 205 | 3586908 | 3587099 | + | NC_010554.1 | Proteus mirabilis HI4320 |
| 206 | 1809098 | 1809313 | + | NZ_CP047045.1 | Terricaulis silvestris |
| 207 | 2939668 | 2939859 | - | NZ_LT960611.1 | Vibrio tapetis subsp. tapetis |
| 208 | 237269 | 237460 | + | NZ_CP028897.1 | Dongshaea marina |
| 209 | 282760 | 282951 | + | NZ_AP018689.1 | Vibrio aphrogenes |
| 210 | 317638 | 317829 | + | NZ_AP018685.1 | Vibrio rumoiensis |
| 211 | 2716930 | 2717121 | - | NZ_AP019651.1 | Vibrio taketomensis |
| 212 | 2853393 | 2853584 | - | NZ_CP032093.1 | Vibrio alfacsensis |
| 213 | 3184255 | 3184446 | + | NZ_AP019657.1 | Vibrio ponticus |
| 214 | 408956 | 409147 | + | NZ_CP044069.1 | Vibrio vulnificus |
| 215 | 280258 | 280449 | + | NZ_CP030788.1 | Vibrio campbellii |
| 216 | 255227 | 255418 | + | NZ_CP009354.1 | Vibrio tubiashii ATCC 19109 |
| 217 | 2822526 | 2822717 | - | NZ_CP018312.1 | Vibrio rotiferianus |
| 218 | 1543835 | 1544026 | - | NZ_CP019959.1 | Vibrio owensii |
| 219 | 487958 | 488149 | + | NZ_CP009467.1 | Vibrio harveyi |
| 220 | 1956313 | 1956504 | - | NZ_CP025792.1 | Vibrio jasicida 090810c |
| 221 | 152894 | 153085 | + | NZ_CP034035.1 | Brenneria rubrifaciens |
| 222 | 4801001 | 4801192 | + | NZ_CP014137.1 | Brenneria goodwinii |
| 223 | 4096903 | 4097094 | - | NZ_CP048796.1 | Providencia vermicola |
| 224 | 974058 | 974249 | + | NZ_CP029736.1 | Providencia rettgeri |
| 225 | 3564663 | 3564854 | - | NZ_CP031123.2 | Providencia huaxiensis |
| 226 | 4872761 | 4872952 | - | NC_012962.1 | Photorhabdus asymbiotica |
| 227 | 1682002 | 1682193 | - | NZ_CP011104.1 | Photorhabdus thracensis |
| 228 | 483191 | 483382 | + | NZ_CP006569.1 | Sodalis praecaptivus |
| 229 | 1199851 | 1200042 | + | NZ_CP059565.1 | Neisseria wadsworthii |
| 230 | 392178 | 392369 | + | NZ_CP054058.1 | Scandinavium goeteborgense |
| 231 | 1823437 | 1823628 | + | NZ_CP040863.1 | Rodentibacter heylii |
| 232 | 3330787 | 3330978 | - | NZ_CP029185.2 | Limnobaculum parvum |
| 233 | 373238 | 373429 | + | NZ_LS483470.1 | Leminorella richardii |
| 234 | 308899 | 309090 | + | NZ_LR134531.1 | Pragia fontium |
| 235 | 1193918 | 1194109 | + | NZ_CP023536.1 | Providencia alcalifaciens |
| 236 | 3799569 | 3799760 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 237 | 226826 | 227017 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 238 | 3886917 | 3887108 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 239 | 3964272 | 3964463 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 240 | 80807 | 80998 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 241 | 4054161 | 4054352 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 242 | 395848 | 396039 | + | NZ_AP023184.1 | Buttiauxella agrestis |
| 243 | 408233 | 408424 | + | NZ_CP035129.1 | Kosakonia cowanii |
| 244 | 461528 | 461719 | + | NZ_CP045845.1 | Kluyvera intermedia |
| 245 | 4176216 | 4176407 | - | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 246 | 2693153 | 2693344 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 247 | 4443214 | 4443405 | - | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 248 | 711873 | 712064 | - | NZ_CP040428.1 | Jejubacter calystegiae |
| 249 | 428652 | 428843 | + | NZ_LR134475.1 | Klebsiella aerogenes |
| 250 | 236256 | 236447 | + | NZ_CP023525.1 | Cedecea neteri |
| 251 | 424847 | 425038 | + | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 252 | 425420 | 425611 | + | NZ_CP041247.1 | Raoultella electrica |
| 253 | 4866194 | 4866385 | - | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 254 | 453854 | 454045 | + | NZ_CP014007.2 | Kosakonia oryzae |
| 255 | 1252813 | 1253004 | - | NZ_CP026047.1 | Raoultella planticola |
| 256 | 434382 | 434573 | + | NZ_CP054254.1 | Klebsiella variicola |
| 257 | 463759 | 463950 | + | NZ_CP046672.1 | Raoultella ornithinolytica |
| 258 | 426987 | 427178 | + | NZ_CP050508.1 | Raoultella terrigena |
| 259 | 4870195 | 4870386 | - | NZ_CP015113.1 | Kosakonia radicincitans |
| 260 | 507533 | 507724 | + | NZ_CP060111.1 | Klebsiella michiganensis |
| 261 | 546682 | 546873 | + | NZ_CP036175.1 | Klebsiella huaxiensis |
| 262 | 3112398 | 3112589 | - | NZ_AP014635.1 | Vibrio tritonius |
| 263 | 4424037 | 4424228 | - | NZ_CP031560.1 | Dickeya dianthicola |
| 264 | 313484 | 313675 | + | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 265 | 405477 | 405668 | + | NZ_CP061511.1 | Mixta calida |
| 266 | 480094 | 480285 | + | NZ_CP026377.1 | Mixta gaviniae |
| 267 | 157075 | 157266 | + | NZ_CP007445.1 | Gilliamella apicola |
| 268 | 449659 | 449850 | + | NZ_CP013990.1 | Leclercia adecarboxylata |
| 269 | 1182275 | 1182466 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 270 | 981230 | 981421 | + | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 271 | 5142160 | 5142351 | + | NZ_CP011602.1 | Phytobacter ursingii |
| 272 | 3481743 | 3481934 | - | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 273 | 316910 | 317101 | + | NZ_CP023567.1 | Erwinia pyrifoliae |
| 274 | 2545787 | 2545978 | - | NZ_CP033078.1 | Vibrio zhugei |
| 275 | 121350 | 121541 | - | NZ_CP040990.1 | Vibrio furnissii |
| 276 | 376326 | 376517 | + | NZ_CP061527.1 | Shigella dysenteriae |
| 277 | 173671 | 173862 | + | NZ_CP009056.1 | Frischella perrara |
| 278 | 1787332 | 1787523 | + | NZ_CP065150.1 | Vibrio kanaloae |
| 279 | 2975575 | 2975766 | - | NC_011753.2 | Vibrio atlanticus |
| 280 | 312625 | 312816 | + | NZ_CP039700.1 | Vibrio cyclitrophicus |
| 281 | 3612280 | 3612471 | - | NZ_CP034148.1 | Pantoea agglomerans |
| 282 | 459093 | 459284 | + | NZ_CP045720.1 | Pantoea eucalypti |
| 283 | 469229 | 469420 | + | NZ_CP038853.1 | Pantoea vagans |
| 284 | 319176 | 319367 | + | NZ_CP065534.1 | Lonsdalea populi |
| 285 | 747008 | 747199 | - | NZ_CP023009.1 | Lonsdalea britannica |
| 286 | 2014327 | 2014518 | + | NZ_CP023706.1 | Edwardsiella tarda |
| 287 | 287288 | 287479 | + | NZ_CP016043.1 | Edwardsiella hoshinae |
| 288 | 3478365 | 3478556 | - | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 289 | 1416862 | 1417053 | - | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 290 | 4102488 | 4102679 | - | NZ_LS483422.1 | Providencia heimbachae |
| 291 | 489225 | 489416 | + | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 292 | 376427 | 376618 | + | NZ_CP059571.1 | Neisseria bacilliformis |
| 293 | 3587043 | 3587234 | - | NZ_CP013187.1 | Pseudoalteromonas phenolica |
| 294 | 2851611 | 2851802 | - | NZ_CP045350.1 | Vibrio aquimaris |
| 295 | 2462093 | 2462284 | - | NZ_CP022741.1 | Vibrio qinghaiensis |
| 296 | 368050 | 368241 | + | NC_011312.1 | Aliivibrio salmonicida LFI1238 |
| 297 | 3824708 | 3824902 | - | NZ_CP016210.1 | Azoarcus olearius |
| 298 | 1512034 | 1512225 | + | NZ_CP072425.1 | Pseudoalteromonas viridis |
| 299 | 404569 | 404760 | + | NZ_CP046268.1 | Vibrio spartinae |
| 300 | 209708 | 209899 | + | NZ_AP022843.1 | Halomonas hydrothermalis |
| 301 | 483975 | 484166 | + | NC_007963.1 | Chromohalobacter salexigens DSM 3043 |
| 302 | 209169 | 209360 | + | NZ_CP065135.1 | Halomonas venusta |
| 303 | 702038 | 702229 | - | NZ_CP059082.1 | Halomonas titanicae |
| 304 | 372941 | 373132 | + | NZ_CP013106.1 | Halomonas huangheensis |
| 305 | 215277 | 215468 | + | NZ_CP048602.1 | Halomonas piezotolerans |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_004556.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF03947.20 | 1.0 | 305 | 1784 | same-strand | Ribosomal Proteins L2, C-terminal domain |
| 2 | PF00181.25 | 1.0 | 305 | 1784 | same-strand | Ribosomal Proteins L2, RNA binding domain |
| 3 | PF00203.23 | 0.98 | 299 | 1489 | same-strand | Ribosomal protein S19 |
| 4 | PF00237.21 | 0.99 | 302 | 1142.0 | same-strand | Ribosomal protein L22p/L17e |
| 5 | PF00189.22 | 1.0 | 305 | 423 | same-strand | Ribosomal protein S3, C-terminal domain |
| 6 | PF07650.19 | 1.0 | 305 | 423 | same-strand | KH domain |
| 7 | PF00252.20 | 0.98 | 299 | 0 | same-strand | Ribosomal protein L16p/L10e |
| 8 | PF00366.22 | 0.99 | 303 | 0 | same-strand | Ribosomal protein S17 |
| 9 | PF00238.21 | 0.93 | 284 | 419.5 | same-strand | Ribosomal protein L14p/L23e |
| 10 | PF17136.6 | 0.93 | 284 | 802.0 | same-strand | Ribosomal proteins 50S L24/mitochondrial 39S L24 |
| 11 | PF00467.31 | 0.7 | 215 | 802 | same-strand | KOW motif |
| 12 | PF00673.23 | 0.94 | 288 | 1132.0 | same-strand | ribosomal L5P family C-terminus |
| 13 | PF00281.21 | 0.94 | 288 | 1132.0 | same-strand | Ribosomal protein L5 |
| 14 | PF00253.23 | 0.88 | 268 | 1685.0 | same-strand | Ribosomal protein S14p/S29e |
++ More..