ProsmORF-pred
Result : Q83HN3
Protein Information
Information Type Description
Protein name 30S ribosomal protein S20
NCBI Accession ID BX251411.1
Organism Tropheryma whipplei (strain TW08/27) (Whipple's bacillus)
Left 209550
Right 209837
Strand +
Nucleotide Sequence GTGGCTAATATAAAGTCTCAGATAAAAAGGAACCGGACAAACGAGAATAACCGCTTGCGAAACAAGGCGGTTAAGAGTGAGCTCAAGACACTTATCCGCCTGGTCAAGCGTGCGGCGCGCGATAATGATTTGCCAAGGGCGGAAGATGCCCTCAGACGTGCTTCTTTGAAGCTTGATAGAGCCGTTAGCAAAGGTGTTATACACCCCAATCAGGCGGCCAACAGGAAGTCTGGCATAGCAAAACTTGTTGTGGCCACTCGCCTGAGAAACTCGACTGCCGGAGAGTAA
Sequence MANIKSQIKRNRTNENNRLRNKAVKSELKTLIRLVKRAARDNDLPRAEDALRRASLKLDRAVSKGVIHPNQAANRKSGIAKLVVATRLRNSTAGE
Source of smORF Swiss-Prot
Function Binds directly to 16S ribosomal RNA. {ECO:0000255|HAMAP-Rule:MF_00500}.
Pubmed ID 12606174
Domain CDD:412349
Functional Category Ribosomal_protein
Uniprot ID Q83HN3
ORF Length (Amino Acid) 95
++ More..
Conservation Analysis
Conservation Analysis
No. of Species: 490
Sr.No. Left Position Right Position Strand NCBI Accession id Species Name
1 359528 359815 - NC_004572.3 Tropheryma whipplei str. Twist
2 244988 245254 + NZ_CP022316.1 Brachybacterium avium
3 1826373 1826639 - NZ_CP023564.1 Brachybacterium ginsengisoli
4 1943944 1944210 + NC_013172.1 Brachybacterium faecium DSM 4810
5 1334732 1334998 + NZ_CP031356.1 Brachybacterium saurashtrense
6 2273369 2273635 - NZ_CP023563.1 Brachybacterium vulturis
7 659808 660074 + NZ_LN849456.1 Devriesea agamarum
8 1424113 1424379 - NZ_AP023355.1 Actinocatenispora thailandica
9 1937645 1937905 - NZ_LR134363.1 Actinomyces slackii
10 2169526 2169795 - NC_008278.1 Frankia alni ACN14a
11 3159095 3159355 + NZ_CP041694.1 Cellulosimicrobium cellulans
12 5951392 5951658 + NZ_CP058322.1 Micromonospora carbonacea
13 1369298 1369558 + NC_022438.1 Leifsonia xyli subsp. cynodontis DSM 46306
14 2146224 2146484 + NC_015588.1 Isoptericola variabilis 225
15 1343447 1343707 + NZ_CP020468.1 Actinomyces gaoshouyii
16 1990722 1990988 - NZ_LR134476.1 Trueperella bialowiezensis
17 2593065 2593331 + NZ_CP023407.1 Streptomyces fungicidicus
18 996213 996473 - NZ_CP053642.1 Actinomyces marmotae
19 1984678 1984947 + NZ_CP031264.1 Streptacidiphilus bronchialis
20 241471 241731 - NZ_CP014209.1 Isoptericola dokdonensis DS-3
21 1991014 1991274 - NC_012669.1 Beutenbergia cavernae DSM 12333
22 2732858 2733124 + NZ_CP012382.1 Streptomyces ambofaciens ATCC 23877
23 4161994 4162260 + NZ_CP045309.1 Micromonospora terminaliae
24 4832756 4833022 - NZ_CP061725.1 Micromonospora craniellae
25 1505927 1506196 - NC_007777.1 Frankia casuarinae
26 1418135 1418395 - NZ_CP039291.1 Cellulomonas shaoxiangyii
27 5481451 5481717 + NC_014391.1 Micromonospora aurantiaca ATCC 27029
28 1637645 1637905 + NZ_CP031423.1 Microbacterium lemovicicum
29 1347663 1347923 - NC_015671.1 Cellulomonas gilvus ATCC 13127
30 6321515 6321775 - NZ_CP032427.1 Streptomyces griseorubiginosus
31 1123637 1123897 - NZ_CP051884.1 Cellulomonas taurus
32 1714060 1714320 - NC_013235.1 Nakamurella multipartita DSM 44233
33 3973342 3973608 + NC_009380.1 Salinispora tropica CNB-440
34 1983378 1983638 + NZ_CP039292.1 Actinomyces procaprae
35 6724561 6724827 - NC_003155.5 Streptomyces avermitilis MA-4680 = NBRC 14893
36 6396023 6396289 - NZ_AP023440.1 Streptomyces glomeroaurantiacus
37 2345394 2345660 + NZ_CP015866.1 Streptomyces parvulus
38 1892726 1892992 + NZ_CP017316.1 Streptomyces rubrolavendulae
39 2028176 2028442 + NZ_CP023696.1 Streptomyces fradiae ATCC 10745 = DSM 40063
40 1673784 1674044 + NZ_LS483423.1 Jonesia denitrificans
41 2995257 2995523 + NZ_CP045096.1 Streptomyces phaeolivaceus
42 1487697 1487957 + NZ_CP017812.1 Boudabousia tangfeifanii
43 2164075 2164347 - NZ_CP022753.1 Nocardiopsis gilva YIM 90087
44 4986353 4986619 - NC_020990.1 Streptomyces albidoflavus
45 5286196 5286462 - NZ_CP031742.1 Streptomyces koyangensis
46 1122779 1123045 - NZ_CP012117.1 Dermabacter vaginalis
47 1214315 1214575 - NZ_CP033325.1 Georgenia faecalis
48 6801811 6802077 - NC_013929.1 Streptomyces scabiei 87.22
49 1814169 1814435 + NZ_CP029188.1 Streptomyces tirandamycinicus
50 4076663 4076929 + NZ_CP065050.1 Streptomyces solisilvae
51 1383965 1384225 - NZ_CP028913.1 Agromyces badenianii
52 4830002 4830268 - NZ_CP065253.1 Streptomyces clavuligerus
53 6746776 6747042 + NZ_CP051486.1 Streptomyces pratensis
54 588829 589095 + NZ_CP007519.1 Trueperella pyogenes
55 2587395 2587661 + NZ_CP023703.1 Streptomyces galilaeus
56 5800284 5800550 + NC_013947.1 Stackebrandtia nassauensis DSM 44728
57 2161262 2161528 + NZ_CP020563.1 Kitasatospora albolonga
58 5879846 5880112 - NC_010572.1 Streptomyces griseus subsp. griseus NBRC 13350
59 3041876 3042142 + NZ_CP027306.1 Streptomyces atratus
60 4987821 4988087 - NZ_CP034279.1 Streptomyces ficellus
61 1468541 1468807 + NZ_CP029254.1 Streptomyces spongiicola
62 2378806 2379072 + NC_021177.1 Streptomyces fulvissimus DSM 40593
63 6189163 6189429 - NZ_CP045643.1 Streptomyces fagopyri
64 5885446 5885712 - NZ_CP030073.1 Streptomyces cadmiisoli
65 2588742 2589002 + NZ_CP066049.1 Actinomyces naeslundii
66 3066937 3067203 + NZ_CP015098.1 Streptomyces qaidamensis
67 1247799 1248065 - NC_017093.1 Actinoplanes missouriensis 431
68 8561451 8561717 - NC_016582.1 Streptomyces bingchenggensis BCW-1
69 520231 520491 - NZ_LR134477.1 Actinomyces viscosus
70 2051815 2052081 + NZ_CP031194.1 Streptomyces paludis
71 5825089 5825355 - NZ_CP026652.1 Streptomyces dengpaensis
72 1546791 1547051 + NZ_CP066060.1 Actinomyces oris
73 2375749 2376015 + NZ_CP020700.1 Streptomyces tsukubensis
74 1520378 1520638 + NZ_CP028129.1 Rathayibacter rathayi
75 2204081 2204347 + NZ_CP042266.1 Streptomyces qinzhouensis
76 2574808 2575074 + NZ_CP023693.1 Streptomyces cinereoruber
77 1378294 1378560 - NZ_CP023865.1 Actinoplanes teichomyceticus ATCC 31121
78 2474957 2475217 + NZ_CP013254.1 Kocuria flava
79 1705198 1705464 - NC_022657.1 Actinoplanes friuliensis DSM 7358
80 5702621 5702887 + NZ_CP030862.1 Streptomyces globosus
81 3443249 3443515 + NZ_CP034539.1 Streptomyces cyaneochromogenes
82 2439986 2440252 + NZ_CP013738.1 Streptomyces globisporus C-1027
83 5105086 5105352 - NZ_CP023202.1 Streptomyces xinghaiensis S187
84 6724374 6724634 - NZ_CP043661.1 Kribbella qitaiheensis
85 96717 96977 + NZ_CP032630.1 Protaetiibacter intestinalis
86 2260700 2260966 + NZ_CP070242.1 Streptomyces californicus
87 2247973 2248239 + NZ_CP020570.1 Streptomyces violaceoruber
88 2834670 2834936 + NZ_CP010407.1 Streptomyces vietnamensis
89 2740693 2740959 + NZ_CP063374.1 Streptomyces chromofuscus
90 1192876 1193136 + NZ_LR134357.1 Actinomyces israelii
91 5502062 5502328 - NZ_LN831790.1 Streptomyces leeuwenhoekii
92 2701178 2701444 + NZ_CP010849.1 Streptomyces cyaneogriseus subsp. noncyanogenus
93 1332656 1332916 - NZ_CP023445.1 Actinosynnema pretiosum
94 1351197 1351457 - NC_013093.1 Actinosynnema mirum DSM 43827
95 2838905 2839165 + NZ_CP035491.1 Agromyces protaetiae
96 6284013 6284279 + NZ_AP022870.1 Phytohabitans flavus
97 2107074 2107340 + NZ_CP024957.1 Streptomyces cavourensis
98 2375074 2375334 + NC_013530.1 Xylanimonas cellulosilytica DSM 15894
99 575596 575856 - NZ_CP018135.1 Neomicrococcus aestuarii
100 1838326 1838592 - NZ_CP063373.1 Streptomyces ferrugineus
101 2149050 2149316 + NZ_CP021080.1 Streptomyces pluripotens
102 1891268 1891528 + NZ_CP047186.1 Rathayibacter tanaceti
103 734963 735229 - NZ_CP009248.1 Corynebacterium sphenisci DSM 44792
104 5303151 5303417 - NZ_CP023702.1 Streptomyces nitrosporeus
105 4966585 4966851 - NZ_CP023692.1 Streptomyces vinaceus
106 1074693 1074959 + NZ_CP038213.1 Ornithinimicrobium flavum
107 11021 11287 - NZ_CP068168.1 Corynebacterium amycolatum
108 2477284 2477550 + NZ_CP072827.1 Streptomyces mobaraensis NBRC 13819 = DSM 40847
109 1840635 1840898 - NZ_LT635457.1 Actinomyces pacaensis
110 5793472 5793738 - NZ_CP011340.1 Streptomyces pristinaespiralis
111 3566850 3567116 + NZ_CP023690.1 Streptomyces spectabilis
112 1309194 1309457 - NZ_CP012507.1 Kocuria palustris
113 1144337 1144603 + NZ_CP070228.1 Arcanobacterium phocisimile
114 1824652 1824912 + NZ_CP015515.1 Rathayibacter tritici
115 1309177 1309464 - NC_014165.1 Thermobispora bispora DSM 43833
116 6577073 6577339 - NZ_CP017248.1 Streptomyces fodineus
117 1570491 1570751 + NZ_CP035495.1 Xylanimonas allomyrinae
118 3127758 3128024 + NZ_CP071839.1 Streptomyces cyanogenus
119 1519501 1519761 + NZ_CP066802.1 Actinomyces weissii
120 2378823 2379089 + NZ_CP029043.1 Streptomyces nigra
121 3058361 3058627 + NC_021985.1 Streptomyces collinus Tu 365
122 2872675 2872938 + NC_016109.1 Kitasatospora setae KM-6054
123 2687434 2687700 + NC_014666.1 Frankia inefficax
124 1925252 1925512 + NC_014550.1 Glutamicibacter arilaitensis Re117
125 6258077 6258343 - NZ_CP060404.1 Streptomyces buecherae
126 1687276 1687542 + NC_010168.1 Renibacterium salmoninarum ATCC 33209
127 2008057 2008317 + NZ_CP038266.1 Microbacterium wangchenii
128 3056649 3056915 + NZ_CP059991.1 Streptomyces gardneri
129 3705811 3706071 + NZ_CP022208.1 Rhodococcus pyridinivorans
130 1093862 1094128 - NZ_LS483427.1 Arcanobacterium haemolyticum
131 825714 825980 + NZ_CP016793.1 Lentzea guizhouensis
132 6607472 6607738 - NZ_CP022744.1 Streptomyces lincolnensis
133 9219878 9220138 + NZ_CP016279.1 Streptomyces griseochromogenes
134 8217763 8218029 + NC_013131.1 Catenulispora acidiphila DSM 44928
135 1951683 1951943 + NZ_CP044232.1 Microbacterium lushaniae
136 3365005 3365265 + NZ_LT906450.1 Rhodococcus rhodochrous
137 3403045 3403311 + NZ_CP071139.1 Streptomyces nojiriensis
138 2467756 2468016 + NZ_CP045529.1 Luteimicrobium xylanilyticum
139 2467040 2467312 - NC_013595.1 Streptosporangium roseum DSM 43021
140 955818 956084 + NZ_CP044427.1 Ornithinimicrobium pratense
141 1601217 1601477 + NZ_CP044344.1 Nocardioides cynanchi
142 6741894 6742154 - NZ_CP023699.1 Streptomyces kanamyceticus
143 2406169 2406435 + NZ_CP029196.1 Streptomyces venezuelae
144 1618738 1618998 - NZ_CP009312.1 Lawsonella clevelandensis
145 1845479 1845739 + NZ_CP033081.1 Glutamicibacter nicotianae
146 7373497 7373757 + NC_022116.1 Amycolatopsis mediterranei RB
147 3675085 3675351 + NZ_CP034463.1 Streptomyces aquilus
148 482450 482716 - NZ_CP066065.1 Schaalia meyeri
149 1667289 1667549 + NZ_CP034412.1 Glutamicibacter creatinolyticus
150 1141946 1142206 - NZ_CP025227.1 Actinomyces wuliandei
151 2484326 2484586 - NC_013729.1 Kribbella flavida DSM 17836
152 5165704 5165973 - NZ_CP023698.1 Streptomyces viridifaciens
153 5050239 5050505 - NZ_CP023701.1 Streptomyces subrutilus
154 2000088 2000360 + NZ_AP022871.1 Phytohabitans suffuscus
155 5922086 5922352 - NZ_CP034687.1 Streptomyces griseoviridis
156 1808004 1808264 + NZ_CP044231.1 Microbacterium caowuchunii
157 764859 765122 - NZ_CP026923.1 Pontimonas salivibrio
158 3846328 3846591 + NZ_AP022613.1 Mycobacterium conspicuum
159 2659306 2659569 + NZ_AP022581.1 Mycobacterium lacus
160 5485352 5485618 - NZ_CP048882.1 Streptomyces bathyalis
161 1071485 1071745 - NZ_CP058670.1 Chryseoglobus indicus
162 3478692 3478952 + NZ_CP035494.1 Microbacterium protaetiae
163 782801 783067 + NZ_CP034438.1 Flaviflexus salsibiostraticola
164 3444794 3445060 + NZ_CP047020.1 Streptomyces broussonetiae
165 2838508 2838768 + NZ_CP014228.1 Actinomyces radicidentis
166 195153 195413 - NZ_LR134350.1 Actinomyces howellii
167 2710075 2710335 + NC_000962.3 Mycobacterium tuberculosis H37Rv
168 1266104 1266364 - NZ_CP031421.1 Microbacterium oleivorans
169 1234984 1235244 - NZ_CP031421.1 Microbacterium oleivorans
170 3764091 3764363 + NC_013510.1 Thermomonospora curvata DSM 43183
171 1568714 1568974 - NC_006361.1 Nocardia farcinica IFM 10152
172 588925 589185 + NZ_CP042260.1 Glutamicibacter halophytocola
173 1018196 1018456 - NZ_AP022609.1 Mycolicibacter hiberniae
174 5383227 5383487 - NZ_CP041146.1 Nocardioides humi
175 1505972 1506232 - NC_019673.1 Saccharothrix espanaensis DSM 44229
176 2770594 2770854 + NC_015848.1 Mycobacterium canettii CIPT 140010059
177 1963583 1963849 + NZ_CP032229.1 Streptomyces seoulensis
178 1319052 1319312 - NZ_CP015449.1 Dietzia lutea
179 5751500 5751769 - NZ_LR134501.1 Nocardiopsis dassonvillei
180 979041 979307 - NC_006085.1 Cutibacterium acnes KPA171202
181 2619192 2619452 + NC_015514.1 Cellulomonas fimi ATCC 484
182 2563983 2564243 - NZ_CP027114.1 Gordonia alkanivorans
183 1680559 1680819 + NZ_CP049933.1 Leucobacter coleopterorum
184 3157581 3157841 + NZ_CP022685.1 Streptomyces formicae
185 1506293 1506553 - NZ_CP034550.1 Saccharothrix syringae
186 6584386 6584652 - NZ_CP023689.1 Streptomyces chartreusis
187 2621077 2621343 + NZ_CP023695.1 Streptomyces alboniger
188 3452733 3452993 - NZ_AP022598.1 Mycolicibacterium parafortuitum
189 1323333 1323596 - NZ_LR134479.1 Rothia aeria
190 2201208 2201471 - NC_014643.1 Rothia dentocariosa ATCC 17931
191 1513327 1513587 + NZ_CP035504.1 Kocuria indica
192 1084212 1084478 - NZ_CP014989.1 Serinicoccus hydrothermalis
193 955763 956029 + NZ_CP040887.1 Serinicoccus chungangensis
194 1550690 1550950 - NZ_CP049257.1 Nocardioides anomalus
195 1521903 1522169 + NZ_AP022569.1 Mycobacterium cookii
196 2387613 2387873 + NZ_AP022582.1 Mycobacterium seoulense
197 2263318 2263578 + NZ_AP022619.1 Mycobacterium paraseoulense
198 1449075 1449341 + NC_021064.1 Cutibacterium avidum 44067
199 911752 912015 - NZ_AP022575.1 Mycobacterium shinjukuense
200 4607909 4608172 + NZ_CP025546.1 Mycobacterium paragordonae
201 1798836 1799099 - NZ_CP007155.1 Kutzneria albida DSM 43870
202 1283328 1283594 + NZ_CP032788.1 Corynebacterium xerosis
203 2812353 2812616 + NZ_CP011883.2 Mycobacterium haemophilum DSM 44634
204 2845409 2845669 - NZ_CP049255.1 Microbacterium endophyticum
205 415013 415273 + NZ_AP022562.1 Mycobacterium novum
206 3414079 3414339 + NC_013441.1 Gordonia bronchialis DSM 43247
207 4227407 4227667 - NZ_AP022599.1 Mycolicibacterium pulveris
208 2773476 2773736 - NZ_CP059694.1 Gordonia rubripertincta
209 1833194 1833454 - NZ_CP016282.1 Cryobacterium arcticum
210 1624826 1625086 - NC_015576.1 Mycolicibacter sinensis
211 2481518 2481778 + NC_014151.1 Cellulomonas flavigena DSM 20109
212 1012586 1012846 + NZ_CP038267.1 Nocardioides euryhalodurans
213 660686 660946 + NZ_AP017457.1 Aurantimicrobium minutum
214 443786 444046 + NZ_CP030033.1 Cryobacterium soli
215 969693 969956 + NC_015389.1 Coriobacterium glomerans PW2
216 610657 610923 + NZ_CP008802.1 Actinotignum schaalii
217 1667005 1667265 - NZ_CP031422.1 Microbacterium oxydans
218 1500700 1500960 - NZ_LT906469.1 Mycolicibacter terrae
219 1147497 1147760 + NC_022663.1 Mycobacterium kansasii ATCC 12478
220 1498978 1499238 - NC_013521.1 Sanguibacter keddieii DSM 10542
221 911367 911627 - NZ_CP019606.1 Tessaracoccus aquimaris
222 851594 851860 - NZ_CP006841.1 Corynebacterium lactis RW2-5
223 2540772 2541032 + NZ_AP022590.1 Mycobacterium mantenii
224 1335741 1336016 - NZ_LR026975.1 Mycolicibacterium hassiacum DSM 44199
225 577493 577753 - NZ_AP022614.1 Mycobacterium parmense
226 3098543 3098806 - NZ_AP022572.1 Mycobacterium shottsii
227 4125470 4125733 + NZ_AP018410.1 Mycobacterium pseudoshottsii JCM 15466
228 5865860 5866123 + NZ_CP058277.1 Mycobacterium marinum
229 411513 411773 + NZ_CP049863.1 Leucobacter viscericola
230 1616417 1616683 + NZ_CP009922.3 Streptomyces xiamenensis
231 605240 605500 + NZ_CP011786.1 Bifidobacterium actinocoloniiforme DSM 22766
232 2091965 2092225 + NZ_CP031425.1 Microbacterium foliorum
233 1689405 1689665 - NZ_CP009360.4 Mycobacterium avium subsp. hominissuis
234 1732321 1732587 + NC_016111.1 Streptomyces cattleya NRRL 8057 = DSM 46488
235 1530694 1530954 - NZ_CP018082.1 Nocardia mangyaensis
236 4679504 4679764 + NZ_LN831039.1 Mycolicibacterium smegmatis
237 1422194 1422454 - NZ_CP020715.1 Cnuibacter physcomitrellae
238 2121785 2122051 + NZ_CP025198.1 Acidipropionibacterium virtanenii
239 3041725 3041985 - NZ_CP061344.1 Microbacterium hominis
240 2138596 2138856 + NZ_CP049934.1 Leucobacter insecticola
241 3801417 3801680 + NZ_LR130759.1 Mycobacterium basiliense
242 3498343 3498603 - NZ_AP022606.1 Mycobacterium branderi
243 2147673 2147936 + NZ_CP009245.1 Corynebacterium aquilae DSM 44791
244 3727407 3727670 - NZ_CP011112.1 Luteipulveratus mongoliensis
245 112396 112662 - NZ_CP019400.1 Acidipropionibacterium acidipropionici
246 3713009 3713272 + NC_015635.1 Microlunatus phosphovorus NM-1
247 5242839 5243105 - NZ_CP022310.1 Streptomyces calvus
248 2904341 2904607 + NZ_CP040635.1 Acidipropionibacterium jensenii
249 317143 317403 - NZ_CP060716.1 Leucobacter denitrificans
250 1862525 1862785 - NZ_CP059164.1 Nocardioides ungokensis
251 1898938 1899198 - NZ_CP018762.1 Microbacterium aurum
252 1731805 1732068 - NZ_CP033724.1 Clavibacter michiganensis subsp. michiganensis
253 2997163 2997423 + NZ_LT906483.1 Mycolicibacterium thermoresistibile
254 2509593 2509853 - NZ_LR134352.1 Nocardia asteroides
255 1432771 1433031 - NZ_CP036250.1 Egicoccus halophilus
256 3737761 3738021 - NZ_CP012150.1 Mycobacterium goodii
257 1516489 1516749 - NZ_CP035037.1 Leucobacter muris
258 736374 736634 - NZ_AP022563.1 Mycolicibacterium duvalii
259 1055833 1056096 - NZ_CP011005.1 Psychromicrobium lacuslunae
260 3427023 3427283 + NZ_CP022295.1 Nocardioides aromaticivorans
261 1603424 1603684 - NZ_CP071883.1 Curtobacterium flaccumfaciens pv. flaccumfaciens
262 1358420 1358683 - NC_014246.1 Mobiluncus curtisii ATCC 43063
263 2345400 2345666 + NZ_AP023439.1 Streptomyces tuirus
264 1757845 1758105 - NZ_CP022521.1 Actinoalloteichus hoggarensis
265 1971110 1971370 - NZ_CP017146.1 Marisediminicola antarctica
266 4439995 4440255 - NZ_LS483468.1 Rhodococcus coprophilus
267 3563824 3564084 + NZ_CP009896.1 Pimelobacter simplex
268 1712540 1712800 + NZ_AP022573.1 Mycobacterium saskatchewanense
269 1919193 1919453 - NC_016946.1 Mycobacterium intracellulare ATCC 13950
270 1641089 1641349 - NZ_CP023147.1 Mycobacterium marseillense
271 2458319 2458579 + NZ_CP011502.1 Aeromicrobium erythreum
272 2585542 2585802 - NZ_CP012752.1 Kibdelosporangium phytohabitans
273 4498779 4499039 - NZ_AP022568.1 Mycobacterium simiae
274 1670443 1670703 - NC_016948.1 Mycobacterium paraintracellulare
275 555838 556098 - NZ_CP035810.1 Brevibacterium luteolum
276 1875552 1875818 + NZ_CP054938.1 Streptomyces harbinensis
277 1326017 1326283 - NZ_CP061539.1 Rothia terrae
278 1518189 1518449 + NZ_CP038256.1 Microbacterium sediminis
279 3235097 3235363 + NZ_CP023694.1 Streptomyces coeruleorubidus
280 173386 173646 + NZ_AP022596.1 Mycolicibacterium helvum
281 2949847 2950107 - NZ_AP022574.1 Mycolicibacterium psychrotolerans
282 2390616 2390879 + NC_004369.1 Corynebacterium efficiens YS-314
283 1264216 1264476 + NZ_CP028130.1 Rathayibacter iranicus
284 4540200 4540460 + NZ_AP022595.1 Mycolicibacterium sarraceniae
285 2603455 2603715 + NZ_CP047180.1 Rathayibacter festucae
286 1205172 1205435 - NZ_LT906441.1 Cutibacterium granulosum
287 1342425 1342691 + NC_012803.1 Micrococcus luteus NCTC 2665
288 3652764 3653024 + NZ_AP022561.1 Mycolicibacterium aichiense
289 5809274 5809540 - NZ_CP032698.1 Streptomyces hundungensis
290 2959690 2959956 + NZ_CP021978.1 Streptomyces hawaiiensis
291 4410511 4410771 + NZ_CP022088.2 Nocardia brasiliensis
292 714931 715191 - NZ_CP029543.1 Mycobacterium leprae
293 3822253 3822513 - NZ_AP022615.1 Mycobacterium heidelbergense
294 4116149 4116409 + NZ_CP018863.1 Arthrobacter crystallopoietes
295 1243220 1243483 - NZ_CP056080.1 Rothia nasimurium
296 1360791 1361051 - NZ_CP048813.1 Rhodococcus triatomae
297 2214992 2215258 - NZ_LT996886.1 Tessaracoccus timonensis
298 3179907 3180167 + NZ_CP029146.1 Rhodococcus ruber
299 5027015 5027275 - NZ_CP061007.1 Saccharopolyspora spinosa
300 1573566 1573826 + NZ_CP041091.1 Nocardioides sambongensis
301 1190110 1190373 - NC_015564.1 Hoyosella subflava DQS3-9A1
302 1677613 1677873 - NZ_LR134355.1 Mycolicibacterium chitae
303 2113765 2114025 + NZ_AP022620.1 Mycolicibacterium anyangense
304 158220 158480 + NZ_AP022583.1 Mycobacterium noviomagense
305 884496 884759 + NC_013203.1 Lancefieldella parvulum DSM 20469
306 135236 135496 + NZ_CP019607.1 Tessaracoccus flavescens
307 4269175 4269435 + NZ_AP022570.1 Mycolicibacterium poriferae
308 3011714 3011974 - NZ_CP038436.1 Nocardioides seonyuensis
309 2557380 2557640 + NZ_CP013979.1 Agromyces aureus
310 1549363 1549626 + NC_022198.1 Corynebacterium argentoratense DSM 44202
311 3365935 3366195 + NC_016906.1 Gordonia polyisoprenivorans VH2
312 5979147 5979410 + NZ_AP023396.1 Nocardia wallacei
313 1925137 1925403 - NZ_CP019962.1 Eubacterium limosum
314 1757121 1757381 + NZ_CP064760.1 Microbacterium schleiferi
315 1372090 1372350 - NZ_CP045929.1 Saccharopolyspora coralli
316 2360690 2360959 - NZ_CP045572.1 Nonomuraea nitratireducens
317 602315 602584 + NZ_CP047156.1 Epidermidibacterium keratini
318 5013263 5013526 + NZ_CP041695.1 Nocardia otitidiscaviarum
319 821004 821267 - NZ_AP019367.1 Parolsenella catena
320 7148237 7148497 + NZ_CP016174.1 Amycolatopsis orientalis
321 2237992 2238255 + NZ_CP015622.1 Corynebacterium crudilactis
322 5034048 5034308 + NZ_CP031142.1 Saccharopolyspora pogona
323 2981816 2982076 + NZ_CP011853.1 Gordonia phthalatica
324 3616746 3617006 + NZ_AP018164.1 Mycobacterium shigaense
325 5714947 5715213 - NZ_CP051006.1 Streptomyces griseofuscus
326 5799296 5799556 - NZ_AP022587.1 Mycobacterium stomatepiae
327 3257594 3257860 + NC_014624.2 Eubacterium callanderi
328 4112589 4112855 - NZ_CP029487.1 Eubacterium maltosivorans
329 1337740 1338000 - NZ_CP015961.1 Dietzia timorensis
330 1290406 1290666 - NZ_CP015453.1 Dietzia psychralcaliphila
331 1508112 1508372 - NZ_CP010271.1 Mycobacteroides saopaulense
332 3315108 3315368 - NZ_AP022589.1 Mycolicibacter minnesotensis
333 3862414 3862674 + NZ_CP011491.1 Mycolicibacterium vaccae 95051
334 2005916 2006179 + NZ_CP011541.1 Corynebacterium epidermidicanis
335 5556628 5556888 - NZ_AP022576.1 Mycobacterium florentinum
336 1262442 1262705 - NZ_CP061538.1 Rothia amarae
337 544654 544914 + NZ_CP060713.1 Nocardioides mesophilus
338 4182375 4182635 + NC_008726.1 Mycolicibacterium vanbaalenii PYR-1
339 1646935 1647195 - NZ_CP014955.1 Mycobacteroides abscessus
340 1790447 1790707 - NZ_CP011530.1 Mycobacteroides immunogenum
341 5778274 5778543 - NZ_AP022593.1 Mycolicibacterium arabiense
342 2636938 2637201 + NZ_AP017369.1 Corynebacterium suranareeae
343 2457675 2457935 + NZ_CP068013.1 Paenarthrobacter ureafaciens
344 2922489 2922755 + NZ_CP019457.1 Streptomyces lydicus
345 3023658 3023918 + NZ_CP065682.1 Brevibacterium casei
346 110877 111137 - NZ_AP022608.1 Mycolicibacterium gadium
347 2511776 2512042 + NZ_CP072931.1 Streptomyces auratus AGR0001
348 2995578 2995844 + NZ_CP023691.1 Streptomyces platensis
349 1993063 1993323 - NZ_AP024310.1 Mycobacterium heckeshornense
350 6291016 6291282 - NZ_CP023688.1 Streptomyces rimosus
351 942462 942725 - NZ_LT635455.1 Olsenella timonensis
352 805457 805717 - NZ_AP022586.1 Mycolicibacterium litorale
353 1676263 1676523 + NZ_LT906453.1 Dermatophilus congolensis
354 2298586 2298846 + NZ_AP022601.1 Mycobacterium gallinarum
355 455282 455548 - NC_014168.1 Segniliparus rotundus DSM 44985
356 3943249 3943509 + NZ_LR134356.1 Mycolicibacterium aurum
357 2712878 2713138 - NZ_AP022560.1 Mycolicibacterium moriokaense
358 3945822 3946082 - NZ_CP015235.1 Rhodococcus fascians D188
359 767178 767441 - NZ_CP009249.1 Corynebacterium phocae
360 3218291 3218551 + NZ_CP019066.1 Tsukamurella tyrosinosolvens
361 1863462 1863728 - NZ_CP068161.1 Corynebacterium propinquum
362 1854150 1854410 - NZ_CP016076.1 Actinoalloteichus fjordicus
363 428025 428282 + NZ_AP019307.1 Nocardioides baekrokdamisoli
364 2900285 2900545 + NC_014158.1 Tsukamurella paurometabola DSM 20162
365 4976568 4976831 + NZ_AP018920.1 Pseudonocardia autotrophica
366 1510221 1510481 - NZ_CP024633.1 Mycobacteroides salmoniphilum
367 1620940 1621200 - NZ_AP018165.1 [Mycobacterium] stephanolepidis
368 1756376 1756636 - NZ_CP007220.1 Mycobacteroides chelonae CCUG 47445
369 3551600 3551860 + NZ_CP032624.1 Gryllotalpicola protaetiae
370 649486 649749 - NZ_LS483460.1 Corynebacterium minutissimum
371 3028794 3029054 - NZ_LR214441.1 Tessaracoccus lapidicaptus
372 1885742 1886005 + NZ_LR134406.1 Arachnia propionica
373 1111464 1111724 - NZ_AP022617.1 Mycolicibacterium monacense
374 6159355 6159615 + NZ_AP022600.1 Mycolicibacterium tokaiense
375 2128025 2128288 + NC_020506.1 Corynebacterium callunae DSM 20147
376 2166915 2167178 + NC_021915.1 Corynebacterium maris DSM 45190
377 2467600 2467866 + NZ_CP040752.1 Streptomyces rectiverticillatus
378 1590580 1590840 - NC_009142.1 Saccharopolyspora erythraea NRRL 2338
379 1105809 1106072 + NC_014363.1 Olsenella uli DSM 7084
380 8622840 8623100 - NZ_CP015163.1 Amycolatopsis albispora
381 3333838 3334098 + NZ_CP027793.1 Rhodococcus hoagii
382 6147304 6147567 + NZ_AP017900.1 Nocardia seriolae
383 2608642 2608902 + NZ_AP022605.1 Mycobacterium doricum
384 1306697 1306957 - NC_013159.1 Saccharomonospora viridis DSM 43017
385 678426 678686 - NZ_LT985188.1 Micropruina glycogenica
386 2150885 2151145 + NZ_CP026734.1 Brevibacterium linens
387 2158371 2158634 + NZ_CP010827.1 Corynebacterium singulare
388 622689 622949 - NZ_CP007490.1 Rhodoluna lacicola
389 7803334 7803594 + NZ_AP022567.1 Mycolicibacterium mageritense
390 1380955 1381218 - NZ_CP038157.1 Corynebacterium sanguinis
391 788726 788989 - NZ_CP009251.1 Corynebacterium stationis
392 2046541 2046801 - NZ_CP013290.1 Janibacter indicus
393 1766357 1766620 + NZ_CP026948.1 Corynebacterium liangguodongii
394 1974457 1974720 + NZ_CP009246.1 Corynebacterium flavescens
395 181434 181697 - NZ_CP069485.1 Corynebacterium glucuronolyticum
396 3861709 3861969 + NZ_AP023172.1 Rhodococcus qingshengii
397 1736949 1737212 + NZ_CP009215.1 Corynebacterium ureicelerivorans
398 1768494 1768757 + NZ_CP008944.1 Corynebacterium atypicum
399 631912 632175 - NZ_CP033898.1 Corynebacterium pseudopelargi
400 614196 614459 - NZ_CP035299.1 Corynebacterium pelargi
401 3520724 3520984 + NZ_AP022618.1 Mycolicibacterium insubricum
402 1835259 1835522 + NZ_CP011311.1 Corynebacterium camporealensis
403 1495093 1495353 - NZ_AP022612.1 Mycolicibacterium confluentis
404 3699519 3699785 + NZ_CP070326.1 Streptomyces noursei
405 847624 847887 - NZ_LR698967.1 Corynebacterium ammoniagenes
406 1807504 1807770 + NZ_CP008876.1 Terribacillus goriensis
407 1891803 1892066 + NZ_CP039247.1 Corynebacterium endometrii
408 1966154 1966417 + NZ_CP019688.1 Corynebacterium glaucum
409 1217401 1217661 - NZ_CP026952.1 Aeromicrobium chenweiae
410 753251 753514 - NZ_CP067012.1 Corynebacterium kefirresidentii
411 2204370 2204633 + NZ_CP009220.1 Corynebacterium deserti GIMN1.010
412 2030819 2031085 + NZ_CP011545.1 Corynebacterium testudinoris
413 43606 43866 - NZ_AP022565.1 Mycolicibacterium alvei
414 2319132 2319392 + NZ_CP025333.1 Brevibacterium aurantiacum
415 1115205 1115465 - NZ_CP045737.1 Aeromicrobium yanjiei
416 3029199 3029459 + NZ_CP027433.1 Gordonia iterans
417 441730 441996 + NZ_CP044548.2 Janibacter melonis
418 3863651 3863911 + NZ_AP022610.1 Mycolicibacterium madagascariense
419 2011256 2011519 + NZ_LT906467.1 Corynebacterium imitans
420 1693211 1693471 - NZ_CP062008.1 Mycolicibacterium mucogenicum DSM 44124
421 1038588 1038848 + NZ_CP022544.1 Bifidobacterium pseudolongum
422 6116250 6116510 + NZ_CP026746.1 Nocardia cyriacigeorgica
423 1348204 1348473 - NC_013124.1 Acidimicrobium ferrooxidans DSM 10331
424 66846 67106 - NZ_CP033972.1 Gordonia insulae
425 6257531 6257791 + NZ_CP008953.1 Amycolatopsis japonica
426 795859 796119 + NZ_CP040508.1 Rhodoluna limnophila
427 2061605 2061865 + NZ_AP022616.1 Mycolicibacterium phocaicum
428 5095241 5095501 - NZ_AP022577.1 Mycolicibacterium aubagnense
429 1718441 1718704 + NC_017301.2 Corynebacterium pseudotuberculosis C231
430 816601 816864 + NZ_LT906443.1 Corynebacterium ulcerans
431 4069231 4069491 + NZ_CP011269.1 Mycolicibacterium fortuitum
432 1720294 1720554 - NZ_CP018044.1 Bifidobacterium choerinum
433 1557903 1558163 + NZ_LT593929.1 Propionibacterium freudenreichii
434 5048443 5048703 + NZ_AP022588.1 Mycolicibacterium sediminis
435 475633 475896 - NZ_LT906473.1 Corynebacterium cystitidis
436 1032063 1032326 + NZ_AP012333.1 Parascardovia denticolens DSM 10105 = JCM 12538
437 1712908 1713168 + NZ_LR134442.1 Propionibacterium australiense
438 4866026 4866286 + NZ_CP043474.1 Mycobacterium grossiae
439 3472101 3472361 - NZ_CP035806.1 Leucobacter triazinivorans
440 2393766 2394029 + NC_020302.1 Corynebacterium halotolerans YIM 70093 = DSM 44683
441 2504602 2504862 - NZ_CP020809.1 Mycobacterium dioxanotrophicus
442 1734569 1734829 + NZ_CP026949.1 Mycetocola zhujimingii
443 1728911 1729174 + NZ_CP011546.1 Corynebacterium uterequi
444 642308 642568 - NZ_CP060789.1 Tessaracoccus defluvii
445 1573111 1573371 + NZ_LR131272.1 Arthrobacter agilis
446 2177604 2177864 - NC_021252.1 Amycolatopsis keratiniphila
447 2165181 2165444 - NZ_CP014635.1 Corynebacterium simulans
448 187316 187579 + NZ_LS483464.1 Corynebacterium renale
449 2774781 2775041 - NZ_CP033719.1 Propionibacterium acidifaciens
450 1723756 1724019 + NZ_CP033897.1 Corynebacterium gerontici
451 1902450 1902713 + NZ_CP026947.1 Corynebacterium yudongzhengii
452 924263 924523 + NZ_CP006018.1 Bifidobacterium indicum LMG 11587 = DSM 20214
453 941838 942098 + NZ_CP007287.1 Bifidobacterium coryneforme
454 1674015 1674281 - NC_013757.1 Geodermatophilus obscurus DSM 43160
455 2069381 2069656 + NZ_CP006764.1 Corynebacterium doosanense CAU 212 = DSM 45436
456 1127188 1127448 + NC_018720.1 Bifidobacterium asteroides PRL2011
457 753216 753479 - NZ_CP011312.1 Corynebacterium kutscheri
458 3354094 3354360 + NZ_CP020569.1 Streptomyces gilvosporeus
459 2016707 2016970 + NZ_CP009247.1 Corynebacterium frankenforstense DSM 45800
460 1544795 1545055 + NZ_AP022603.1 Mycolicibacterium fallax
461 1962575 1962838 + NZ_CP007790.1 Corynebacterium marinum DSM 44953
462 2653821 2654084 + NZ_CP011542.1 Corynebacterium mustelae
463 766971 767243 - NZ_CP033433.1 Cohnella candidum
464 1958807 1959067 - NZ_CP016353.1 Prauserella marina
465 986780 987040 - NZ_AP012322.1 Bifidobacterium angulatum DSM 20098 = JCM 7096
466 3321558 3321821 - NZ_CP053564.1 Pseudonocardia broussonetiae
467 2049124 2049387 + NC_012590.1 Corynebacterium aurimucosum ATCC 700975
468 1326644 1326904 - NZ_CP022752.1 Actinopolyspora erythraea
469 902348 902620 - NZ_CP013652.1 Paenibacillus naphthalenovorans
470 2639112 2639372 + NZ_CP029642.1 Arthrobacter dokdonellae
471 334605 334865 - NZ_CP049253.1 Microbacterium amylolyticum
472 2146777 2147052 - NC_015312.1 Pseudonocardia dioxanivorans CB1190
473 1989653 1989916 + NZ_LS483459.1 Corynebacterium jeikeium
474 963334 963594 - NZ_AP012325.1 Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043
475 1053141 1053401 - NZ_CP025199.1 Bifidobacterium pseudocatenulatum
476 808603 808866 - NC_015673.1 Corynebacterium resistens DSM 45100
477 1019551 1019811 - NZ_CP026999.1 Bifidobacterium longum
478 2175405 2175668 + NZ_CP004353.1 Corynebacterium vitaeruminis DSM 20294
479 876492 876761 - NC_021663.1 Corynebacterium terpenotabidum Y-11
480 1248250 1248510 + NZ_CP006712.1 Bifidobacterium breve JCM 7017
481 1808273 1808536 + NZ_LR738855.1 Corynebacterium rouxii
482 1076005 1076265 - NZ_CP013745.1 Arthrobacter alpinus
483 290609 290869 - NZ_CP062938.1 Bifidobacterium eulemuris
484 2545800 2546060 + NZ_CP062948.1 Bifidobacterium lemurum
485 988535 988795 - NZ_CP028341.1 Bifidobacterium adolescentis
486 1211748 1212008 - NZ_AP012326.1 Bifidobacterium dentium JCM 1195 = DSM 20436
487 1467551 1467811 - NZ_AP012331.1 Bifidobacterium scardovii JCM 12489 = DSM 13734
488 2435543 2435809 + NZ_CP006842.1 Corynebacterium glyciniphilum AJ 3170
489 1789481 1789744 + NZ_LN831026.1 Corynebacterium diphtheriae
490 1158790 1159059 + NZ_CP042429.1 Corynebacterium nuruki S6-4
491 460946 461191 + NZ_CP024965.1 Entomoplasma somnilux
++ More..
Neighborhood Conservation Analysis
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Conservation Analysis
Neighborhood Representative Chosen(Species): NZ_CP022316.1
Sr.No. Domain Co-occurrence Frequency No. of species in which domain occurs with smORF Median distance b/w smORF and domain bearing ORFs Orientation relative to smORF PFAM Information
1 PF00009.29 0.68 334 836.0 opposite-strand Elongation factor Tu GTP binding domain
2 PF06421.14 0.69 337 840 opposite-strand GTP-binding protein LepA C-terminus
3 PF00679.26 0.69 337 840 opposite-strand Elongation factor G C-terminus
4 PF03144.27 0.68 334 840.0 opposite-strand Elongation factor Tu domain 2
5 PF06144.15 0.7 341 244 opposite-strand DNA polymerase III, delta subunit
6 PF03772.18 0.71 349 1651.0 opposite-strand Competence protein
7 PF12836.9 0.64 314 3673 opposite-strand Helix-hairpin-helix motif
8 PF10531.11 0.6 296 3673 opposite-strand SLBB domain
++ More..